EY692137

Overview
NameEY692137
Unique NameEY692137
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length619
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13600 contig Csv1_Contig13600:1..606. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY692137 vs. ExPASy Swiss-Prot
Match: SODCP_SPIOL (Superoxide dismutase [Cu-Zn], chloroplastic OS=Spinacia oleracea GN=SODCP PE=1 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 7.848e-12
Identity = 45/133 (33.83%), Postives = 65/133 (48.87%), Query Frame = 2
Query:  116 ISFTQEGNGTTTVEGNISGVTPGDHALVIHTYGNVNNVWITTGAPFKP-----------AGTKGVIDNITVDVDGTATFKIY-GKVALSGPDSVIGRGLVLH-------------SNPSPNPGPGVAWGVIGL 439
            ++ TQE +G TTV   ISG+ PG H   +H +G+  N  ++TG  F P               G + NI  + DG A   I   ++ L+GP+SV+GR LV+H             S  + N G  +A GV+GL
Sbjct:   87 VTLTQEDDGPTTVNVRISGLAPGKHGFHLHEFGDTTNGCMSTGPHFNPDKKTHGAPEDEVRHAGDLGNIVANTDGVAEATIVDNQIPLTGPNSVVGRALVVHELEDDLGKGGHELSPTTGNAGGRLACGVVGL 219          
BLAST of EY692137 vs. ExPASy Swiss-Prot
Match: SODCP_ARATH (Superoxide dismutase [Cu-Zn], chloroplastic OS=Arabidopsis thaliana GN=SODCP PE=1 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 7.848e-12
Identity = 45/133 (33.83%), Postives = 66/133 (49.62%), Query Frame = 2
Query:  116 ISFTQEGNGTTTVEGNISGVTPGDHALVIHTYGNVNNVWITTGAPFKPAGT-----------KGVIDNITVDVDGTA-TFKIYGKVALSGPDSVIGRGLVLH-------------SNPSPNPGPGVAWGVIGL 439
            ++ TQ+ +G TTV   I+G+TPG H   +H +G+  N  I+TG  F P               G + NI  + DG A T  +  ++ L+GP+SV+GR  V+H             S  + N G  +A GVIGL
Sbjct:   81 VTLTQDDSGPTTVNVRITGLTPGPHGFHLHEFGDTTNGCISTGPHFNPNNMTHGAPEDECRHAGDLGNINANADGVAETTIVDNQIPLTGPNSVVGRAFVVHELKDDLGKGGHELSLTTGNAGGRLACGVIGL 213          
BLAST of EY692137 vs. ExPASy Swiss-Prot
Match: SODCP_MEDSA (Superoxide dismutase [Cu-Zn], chloroplastic OS=Medicago sativa GN=SODCP PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.339e-11
Identity = 47/133 (35.34%), Postives = 64/133 (48.12%), Query Frame = 2
Query:  116 ISFTQEGNGTTTVEGNISGVTPGDHALVIHTYGNVNNVWITTGAPFKP-----------AGTKGVIDNITVDVDGTATFKIY-GKVALSGPDSVIGRGLVLH-------------SNPSPNPGPGVAWGVIGL 439
            ++ TQE    TTV   I+G+TPG H   +H YG+  N  I+TG  F P               G + NI  D +G A   I   ++ L+GP+SVIGR LV+H             S  + N G  +A GV+GL
Sbjct:   67 VTLTQENESPTTVNVRITGLTPGLHGFHLHEYGDTTNGCISTGPHFNPNQLTHGAPEDEIRHAGDLGNIIADANGVAEATIVDNQIPLTGPNSVIGRALVVHELEDDLGKGGHELSLSTGNAGGRLACGVVGL 199          
BLAST of EY692137 vs. ExPASy Swiss-Prot
Match: SODC_BRUPA (Superoxide dismutase [Cu-Zn] OS=Brugia pahangi GN=SODC PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.284e-11
Identity = 48/139 (34.53%), Postives = 64/139 (46.04%), Query Frame = 2
Query:  116 ISFTQEGNGT-TTVEGNISGVTPGDHALVIHTYGNVNNVWITTGAPFKPAGTK-----------GVIDNITVDVDGTATFKIYGK-VALSGPDSVIGRGLVLHSN----------------PSPNPGPGVAWGVIGLDA 445
            I F QE  G+ TT+ G I G+TPG H   +H YG+  N  I+ G  F P               G + NI    DGTA   I  K V L GP+S+IGR LV+H++                 + N G  VA G++ + A
Sbjct:   18 IRFKQEKEGSPTTISGEIKGLTPGLHGFHVHQYGDTTNGCISAGPHFNPYNKTHGGPTDEMRHVGDLGNIVAGADGTAHIDISDKHVQLLGPNSIIGRSLVVHADQDDLGKGVGDKKDESLKTGNAGARVACGIVAVSA 156          
BLAST of EY692137 vs. ExPASy Swiss-Prot
Match: SODCP_PEA (Superoxide dismutase [Cu-Zn], chloroplastic OS=Pisum sativum GN=SODCP PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.284e-11
Identity = 45/133 (33.83%), Postives = 65/133 (48.87%), Query Frame = 2
Query:  116 ISFTQEGNGTTTVEGNISGVTPGDHALVIHTYGNVNNVWITTGAPFKP-----------AGTKGVIDNITVDVDGTATFKIY-GKVALSGPDSVIGRGLVLH-------------SNPSPNPGPGVAWGVIGL 439
            ++ TQ+  G TTV   I+G+TPG H   +H YG+  N  I+TG  F P               G + NI  + +G A   I   ++ L+GP+SV+GR LV+H             S  + N G  +A GV+GL
Sbjct:   67 VTLTQDDEGPTTVNVRITGLTPGLHGFHLHEYGDTTNGCISTGPHFNPNKLTHGAPEDEIRHAGDLGNIVANAEGVAEATIVDNQIPLTGPNSVVGRALVVHELQDDLGKGGHELSLSTGNAGGRLACGVVGL 199          
BLAST of EY692137 vs. ExPASy Swiss-Prot
Match: SODCP_ZANAE (Superoxide dismutase [Cu-Zn], chloroplastic OS=Zantedeschia aethiopica GN=SODCP PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.982e-11
Identity = 46/133 (34.59%), Postives = 65/133 (48.87%), Query Frame = 2
Query:  116 ISFTQEGNGTTTVEGNISGVTPGDHALVIHTYGNVNNVWITTGAPFKP-----------AGTKGVIDNITVDVDGTATFKIY-GKVALSGPDSVIGRGLVLH-------------SNPSPNPGPGVAWGVIGL 439
            ++  QE +G TTV   I+G+TPG H   +H YG+  N  I+TG+ F P               G + NI  +VDG A   I   ++ LSG +SV+GR  V+H             S  + N G  +A GV+GL
Sbjct:   81 VTLVQEDDGPTTVNVRITGLTPGLHGFHLHEYGDTTNGCISTGSHFNPNKLTHGAPMDVVRHAGDLGNIVANVDGLAEATIVDDQIPLSGSNSVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGL 213          
BLAST of EY692137 vs. ExPASy Swiss-Prot
Match: SODCP_ORYSJ (Superoxide dismutase [Cu-Zn], chloroplastic OS=Oryza sativa subsp. japonica GN=SODCP PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.982e-11
Identity = 44/133 (33.08%), Postives = 64/133 (48.12%), Query Frame = 2
Query:  116 ISFTQEGNGTTTVEGNISGVTPGDHALVIHTYGNVNNVWITTGAPFKPAGT-----------KGVIDNITVDVDGTATFKIYGK-VALSGPDSVIGRGLVLH-------------SNPSPNPGPGVAWGVIGL 439
            ++ TQ+  G TTV   ++G+TPG H   +H +G+  N  I+TG  F P               G + NI  + +G A   I  K + LSGP+SV+GR  V+H             S  + N G  +A GV+GL
Sbjct:   76 VTLTQDDQGPTTVNVRVTGLTPGLHGFHLHEFGDTTNGCISTGPHFNPNNLTHGAPEDEVRHAGDLGNIVANAEGVAEATIVDKQIPLSGPNSVVGRAFVVHELEDDLGKGGHELSLSTGNAGGRLACGVVGL 208          
BLAST of EY692137 vs. ExPASy Swiss-Prot
Match: SODE_BRUPA (Extracellular superoxide dismutase [Cu-Zn] OS=Brugia pahangi PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.087e-11
Identity = 47/138 (34.06%), Postives = 64/138 (46.38%), Query Frame = 2
Query:  116 ISFTQEGNGTTTVEGNISGVTPGDHALVIHTYGNVNNVWITTGAPFKPAGTK-----------GVIDNITVDVDGTATFKIYGK-VALSGPDSVIGRGLVLHSN----------------PSPNPGPGVAWGVIGLDA 445
            I F Q+ N +TT+ G I G+TPG H   +H YG+  N  I+ G  F P               G + NI    DGTA   I  K V L GP+S+IGR LV+H++                 + N G  VA G++ + A
Sbjct:   63 IHFQQDKN-STTISGEIKGLTPGLHGFHVHQYGDTTNGCISAGPHFNPYNKTHGDPTDEMRHVGDLGNIVAGADGTAHIDISDKHVQLLGPNSIIGRSLVVHADQDDLGKGVGDKKDESLKTGNAGGRVACGIVAISA 199          
BLAST of EY692137 vs. ExPASy Swiss-Prot
Match: SODCP_SOLLC (Superoxide dismutase [Cu-Zn], chloroplastic OS=Solanum lycopersicum GN=SODCP.2 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.087e-11
Identity = 43/133 (32.33%), Postives = 66/133 (49.62%), Query Frame = 2
Query:  116 ISFTQEGNGTTTVEGNISGVTPGDHALVIHTYGNVNNVWITTGAPFKP-----------AGTKGVIDNITVDVDGTATFKIY-GKVALSGPDSVIGRGLVLH-------------SNPSPNPGPGVAWGVIGL 439
            ++ +Q+ +G TTV   I+G+ PG H   +H YG+  N  ++TGA F P               G + NI  + DG A   +   ++ L+GP+SV+GR LV+H             S  + N G  +A GV+GL
Sbjct:   82 VTLSQDDDGPTTVNVRITGLAPGLHGFHLHEYGDTTNGCMSTGAHFNPNKLTHGAPGDEIRHAGDLGNIVANADGVAEVTLVDNQIPLTGPNSVVGRALVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGL 214          
BLAST of EY692137 vs. ExPASy Swiss-Prot
Match: SODCP_PETHY (Superoxide dismutase [Cu-Zn], chloroplastic OS=Petunia hybrida GN=SODCP PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.644e-11
Identity = 43/133 (32.33%), Postives = 66/133 (49.62%), Query Frame = 2
Query:  116 ISFTQEGNGTTTVEGNISGVTPGDHALVIHTYGNVNNVWITTGAPFKPAGT-----------KGVIDNITVDVDGTATFKIY-GKVALSGPDSVIGRGLVLH-------------SNPSPNPGPGVAWGVIGL 439
            ++ TQ+ +G TTV+  I+G+ PG H   +H +G+  N  ++TG  F P G             G + NI  +  G A   +   ++ LSGP+SV+GR LV+H             S  + N G  +A GV+GL
Sbjct:   84 VTLTQDDDGPTTVKVRITGLAPGLHGFHLHEFGDTTNGCMSTGPHFNPNGLTHGAPGDEVRHAGDLGNIEANASGVAEATLVDNQIPLSGPNSVVGRALVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGL 216          
The following BLAST results are available for this feature:
BLAST of EY692137 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 40
Match NameE-valueIdentityDescription
SODCP_SPIOL7.848e-1233.83Superoxide dismutase [Cu-Zn], chloroplastic OS=Spi... [more]
SODCP_ARATH7.848e-1233.83Superoxide dismutase [Cu-Zn], chloroplastic OS=Ara... [more]
SODCP_MEDSA1.339e-1135.34Superoxide dismutase [Cu-Zn], chloroplastic OS=Med... [more]
SODC_BRUPA2.284e-1134.53Superoxide dismutase [Cu-Zn] OS=Brugia pahangi GN=... [more]
SODCP_PEA2.284e-1133.83Superoxide dismutase [Cu-Zn], chloroplastic OS=Pis... [more]
SODCP_ZANAE2.982e-1134.59Superoxide dismutase [Cu-Zn], chloroplastic OS=Zan... [more]
SODCP_ORYSJ2.982e-1133.08Superoxide dismutase [Cu-Zn], chloroplastic OS=Ory... [more]
SODE_BRUPA5.087e-1134.06Extracellular superoxide dismutase [Cu-Zn] OS=Brug... [more]
SODCP_SOLLC5.087e-1132.33Superoxide dismutase [Cu-Zn], chloroplastic OS=Sol... [more]
SODCP_PETHY6.644e-1132.33Superoxide dismutase [Cu-Zn], chloroplastic OS=Pet... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-097-C07-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY692137 ID=EY692137; Name=EY692137; organism=Citrus sinensis; type=EST; length=619bp
CCACGCGTCCGAAAAGCCCTCTTCATTTTCCTTCTCTAAGGGTTTTTCGA
GATCACGTAGCACAATGGTGAATGCAACTGTAGTTCTTACTGGAGTTGTG
GGTCGTGTTGGAACTATTTCCTTTACCCAGGAAGGAAATGGTACAACAAC
CGTGGAAGGAAACATCTCTGGTGTCACTCCTGGTGATCATGCACTGGTTA
TTCACACTTACGGAAACGTAAATAATGTTTGGATAACAACTGGAGCCCCT
TTTAAACCTGCTGGAACTAAAGGTGTTATAGACAATATCACTGTTGATGT
TGACGGTACTGCTACTTTTAAAATTTACGGGAAGGTTGCTCTTTCTGGAC
CAGATTCTGTTATTGGAAGGGGTCTTGTACTCCACTCAAATCCCAGTCCA
AATCCCGGTCCCGGAGTAGCTTGGGGTGTCATCGGTCTCGATGCATGAAA
TGGCTTCTCTCCAAACCATAATAAATACATTTGACATGATGTTACATGTG
TTATAAAATATTTAATAAAATAAATAATATGTTGCACGAAGCATGGCTAT
AGTAAAACTAAAATAAAAAGCCATAACGAACCTGTAATATCTTGTACCAA
AAAAAAAAAAAAAAAAGGC
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