EY692130

Overview
NameEY692130
Unique NameEY692130
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length877
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY692130 vs. ExPASy Swiss-Prot
Match: RL3_METVA (50S ribosomal protein L3P OS=Methanococcus vannielii GN=rpl3p PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 3.019e-26
Identity = 60/156 (38.46%), Postives = 90/156 (57.69%), Query Frame = 1
Query:   70 QYETDEGKKSIQAQLEKIKKYASV---------VRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGV-TRLPRKTHRGL-RKVACIGAWHPARVSFTVARAGQNGYHHRTE 504
            Q + + G+K    + E+IK   S+         +RV+ HT   K  G+ +KK  ++EI+V G ++AEK+ YA     K + ++ VF+  E ID + VTKGKG++G V RWGV  +  +   +G+ R+   IG W P RV +TV  AGQ G+H RTE
Sbjct:  105 QQDKELGRKLTVTKKEEIKTVESLDAVLEKTVDLRVIVHTN-PKTTGIPKKKPEVVEIRVGGSSVAEKLAYAKDILGKTLSINDVFETGEFIDTLAVTKGKGFQGPVKRWGVKIQFGKHQRKGVGRQTGSIGPWRPKRVMWTVPLAGQMGFHQRTE 259          

HSP 2 Score: 35.4242 bits (80), Expect = 3.019e-26
Identity = 20/58 (34.48%), Postives = 28/58 (48.28%), Query Frame = 2
Query:  509 NKKVYKLGKGGTGVSHWLN*I*QGLRKDLPPWGGFPHYGIVKKDYLNVKGCLVGTIKK 682
            NK++ KLG  G                ++ P GGF +YG VK  Y+ VKG + G  K+
Sbjct:  261 NKRILKLGSEGA---------------EITPKGGFLNYGAVKNGYVVVKGTVQGPAKR 303          
BLAST of EY692130 vs. ExPASy Swiss-Prot
Match: RL3_ARCFU (50S ribosomal protein L3P OS=Archaeoglobus fulgidus GN=rpl3p PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 3.931e-26
Identity = 56/130 (43.08%), Postives = 80/130 (61.54%), Query Frame = 1
Query:  121 IKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGL--RKVACIGAWHPARVSFTVARAGQNGYHHRTE 504
            ++  AS VRV+ +TQ   + G+ +K   +ME ++ GG + E +DYA     K+I V  VF +  +ID+I VTKGKG++G V RWGV  L  K  R    R+V  +G W+P  V +TV +AGQ G+H RTE
Sbjct:  128 VENGASEVRVVTYTQPYLITGVPKKVPDVMEHRI-GGNVEEALDYAISKLGKEISVSEVFDEGAIIDVIAVTKGKGFQGPVKRWGVITLDAKHARSSKHRRVGNLGPWNPHHVRWTVPQAGQMGFHQRTE 256          

HSP 2 Score: 37.3502 bits (85), Expect = 3.931e-26
Identity = 17/58 (29.31%), Postives = 31/58 (53.45%), Query Frame = 2
Query:  509 NKKVYKLGKGGTGVSHWLN*I*QGLRKDLPPWGGFPHYGIVKKDYLNVKGCLVGTIKK 682
            NK++ K+G+ G               +++ P GGF HYG+++  Y+ V G + G +K+
Sbjct:  258 NKRLIKIGENG---------------EEITPKGGFLHYGVIRTQYVLVTGSVPGPVKR 300          
BLAST of EY692130 vs. ExPASy Swiss-Prot
Match: RL3_PYRAE (50S ribosomal protein L3P OS=Pyrobaculum aerophilum GN=rpl3p PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.663e-24
Identity = 57/144 (39.58%), Postives = 85/144 (59.03%), Query Frame = 1
Query:   91 KKSIQAQLEKIKKYASV---VRVLAHTQIRKMKGLKQKKAHLMEIQVNG-GTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPR--KTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTE 504
            K  +  QL+K++++  V   VR L  TQ   + G+ +K   L+EI + G  ++ E++++A     K +    VF   +++D+I VTKGKGY+GV+ R+GVT LPR  K  +G R+   IG   PA V FT  R GQ G+H RTE
Sbjct:  123 KLDVDKQLKKVEEFRDVAVDVRALVATQPH-LSGIGKKTPELLEIPIGGVPSVDERINFAISLLGKTVSPKDVFTPGQLVDVIAVTKGKGYQGVIKRFGVTILPRWHKHRKGHRRTGTIGPQAPA-VMFTQPRPGQMGFHQRTE 264          

HSP 2 Score: 38.1206 bits (87), Expect = 2.663e-24
Identity = 18/58 (31.03%), Postives = 30/58 (51.72%), Query Frame = 2
Query:  509 NKKVYKLGKGGTGVSHWLN*I*QGLRKDLPPWGGFPHYGIVKKDYLNVKGCLVGTIKK 682
            NK++ K+G+ G                ++ P  GFPHYG+VK  Y+ ++G + G  K+
Sbjct:  266 NKRLLKIGENGA---------------EITPKSGFPHYGVVKGPYILIQGSVPGARKR 308          
BLAST of EY692130 vs. ExPASy Swiss-Prot
Match: RL3_PYRHO (50S ribosomal protein L3P OS=Pyrococcus horikoshii GN=rpl3p PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 5.656e-24
Identity = 70/179 (39.11%), Postives = 99/179 (55.31%), Query Frame = 1
Query:   73 YETDEGKKSIQAQLEKIKKYASV-VRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTENEQEGLQAWQGWDGSLTLA*LNLTGTEKGLTPMG 606
            Y  +E ++ + A  + IK+   V VR L  TQ   +K   +KK  +ME  + G ++ EK +Y      K+I V  V ++ E++D+I VTKGKG +G V RWG+     K  +G RKV  IG WHPARV +TV  AGQ G+HHRTE  +  +    G +G L      + G E  +TP G
Sbjct:  137 YTQEEFEQKLGALEDMIKEGEIVEVRALVSTQPWVIK--LKKKPEVMEYAIGGTSVEEKFNYIKEKLGKEIRVGEVLKEGELLDVIAVTKGKGTQGPVKRWGIKLRAHKDSKGRRKVGSIGPWHPARVMWTVPMAGQMGFHHRTELNKRLIAI--GENGKLV-----IDGNEIEITPKG 306          
BLAST of EY692130 vs. ExPASy Swiss-Prot
Match: RL3_PYRCJ (50S ribosomal protein L3P OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 5.869e-24
Identity = 60/144 (41.67%), Postives = 86/144 (59.72%), Query Frame = 1
Query:   91 KKSIQAQLEKIKKYASV---VRVLAHTQIRKMKGLKQKKAHLMEIQVNG-GTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPR--KTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTE 504
            K   + QL+ +++Y  V   VRVL  TQ R + G+ +K   ++EI V G  +I E++++A     K +    VF   +++D+I VTKGKGY+GVV R+GVT LPR  K  +G R+   IG   PA + FT  R GQ G+H RTE
Sbjct:  123 KFDTEKQLKALEEYRDVAVDVRVLVATQPR-LSGIGKKTPEVLEIPVGGVPSIDERINFAISLLGKTVSPKDVFTPGQLVDVIAVTKGKGYQGVVKRFGVTILPRWHKHRKGHRRTGTIGPQAPA-LMFTQPRPGQMGFHQRTE 264          

HSP 2 Score: 36.965 bits (84), Expect = 5.869e-24
Identity = 17/58 (29.31%), Postives = 29/58 (50.00%), Query Frame = 2
Query:  509 NKKVYKLGKGGTGVSHWLN*I*QGLRKDLPPWGGFPHYGIVKKDYLNVKGCLVGTIKK 682
            NK++ K+G  G                ++ P  GFPHYG++K  Y+ ++G + G  K+
Sbjct:  266 NKRILKIGDNGA---------------EITPKSGFPHYGVIKGPYILLQGSVPGARKR 308          
BLAST of EY692130 vs. ExPASy Swiss-Prot
Match: RL3_SULTO (50S ribosomal protein L3P OS=Sulfolobus tokodaii GN=rpl3p PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.293e-23
Identity = 59/144 (40.97%), Postives = 87/144 (60.42%), Query Frame = 1
Query:   91 KKSIQAQLEKIKKYASVV---RVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPR--KTHRGLRKVACIGAWHPA-RVSFTVARAGQNGYHHRTE 504
            K+ ++ +L++I    + +   RVL  TQ + +  L +KK  ++E+QV GG I  +++Y      K + V  VF++ ++IDIIGVTKGKG++GVV R+GV  LPR  K  +G RKV   GA  P+      V + GQ GYH RTE
Sbjct:  129 KEKMKGKLDEINNKLNDILYLRVLIATQPKLVPSLGKKKPEIVEVQVGGGDIKSQLNYVLNILGKPLSVKDVFKEGQLIDIIGVTKGKGFQGVVKRYGVVELPRWHKHRKGSRKV---GARGPSFSTPSYVPQPGQMGYHRRTE 269          

HSP 2 Score: 34.2686 bits (77), Expect = 1.293e-23
Identity = 13/31 (41.94%), Postives = 22/31 (70.97%), Query Frame = 2
Query:  590 DLPPWGGFPHYGIVKKDYLNVKGCLVGTIKK 682
            ++ P GGF +YGIV+  YL ++G ++G  K+
Sbjct:  283 EINPKGGFVNYGIVRNTYLIIEGSIIGAKKR 313          
BLAST of EY692130 vs. ExPASy Swiss-Prot
Match: RL3_META3 (50S ribosomal protein L3P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.684e-23
Identity = 52/142 (36.62%), Postives = 81/142 (57.04%), Query Frame = 1
Query:   94 KSIQAQLEKIKKYASV---VRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGV-TRLPRKTHRGL-RKVACIGAWHPARVSFTVARAGQNGYHHRTE 504
            K  +A  EK+ + A     VR + HT   K   L +KK  ++EI++ G  I++ + YA     K++ ++ VF   E ID + +TKGKG++G V RWG+  +  +  ++G+ R    IG W P R+ +TV  AGQ G+H RTE
Sbjct:  118 KEPKANTEKLDEVADKIVEVRAIVHTN-PKDTNLPKKKPEIIEIKIGGKNISDIIAYAKDIIGKKLSINDVFTGGEFIDTVAITKGKGFQGPVKRWGIKIQFGKHQNKGVGRHTGSIGPWTPKRIMWTVPMAGQVGFHQRTE 258          

HSP 2 Score: 38.1206 bits (87), Expect = 1.684e-23
Identity = 19/58 (32.76%), Postives = 32/58 (55.17%), Query Frame = 2
Query:  509 NKKVYKLGKGGTGVSHWLN*I*QGLRKDLPPWGGFPHYGIVKKDYLNVKGCLVGTIKK 682
            NK++ K+G+ G+               ++ P GGF +YG+VK +Y+ VKG + G  K+
Sbjct:  260 NKRILKIGENGS---------------EIVPKGGFLNYGVVKNNYVLVKGSVQGPAKR 302          
BLAST of EY692130 vs. ExPASy Swiss-Prot
Match: RL3_PYRAR (50S ribosomal protein L3P OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 2.190e-23
Identity = 56/144 (38.89%), Postives = 83/144 (57.64%), Query Frame = 1
Query:   91 KKSIQAQLEKIKKYASV---VRVLAHTQIRKMKGLKQKKAHLMEIQVNG-GTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPR--KTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTE 504
            K  +  Q++++++Y  V   VR L  TQ   + G+ +K   L+EI + G   I E++ +A     K +    VF   +++D+I VTKGKG++GVV R+GVT LPR  K  +G R+   IG   PA + FT  R GQ G+H RTE
Sbjct:  123 KVDVDKQMKQVEEYRDVAVEVRALVATQPH-LSGIGKKTPELLEIPIGGVPNIDERIKFAISLLGKTVSPKDVFSPGQLVDVIAVTKGKGWQGVVKRFGVTILPRWHKHRKGHRRTGTIGPQAPA-LMFTQPRPGQMGFHQRTE 264          

HSP 2 Score: 38.891 bits (89), Expect = 2.190e-23
Identity = 18/58 (31.03%), Postives = 30/58 (51.72%), Query Frame = 2
Query:  509 NKKVYKLGKGGTGVSHWLN*I*QGLRKDLPPWGGFPHYGIVKKDYLNVKGCLVGTIKK 682
            NK++ K+G+ G                ++ P  GFPHYG++K  Y+ ++G L G  K+
Sbjct:  266 NKRLLKIGENGA---------------EITPKSGFPHYGVIKGPYILIQGSLPGARKR 308          
BLAST of EY692130 vs. ExPASy Swiss-Prot
Match: RL3_METTH (50S ribosomal protein L3P OS=Methanobacterium thermoautotrophicum GN=rpl3p PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 2.190e-23
Identity = 54/146 (36.99%), Postives = 81/146 (55.48%), Query Frame = 1
Query:  103 QAQLEKIK---KYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGL--RKVACIGAWHPARVSFTVARAGQNGYHHRTENEQEGLQ 525
            +A +EKI+   +Y + VRV+ HT  R +  + +KK  + E  + G T  EK +YA     K +    +F +   +D I VTKGKG++G V RWG+     K  R    R +  +G W P+R  +TV +AGQ GYH RTE  ++ L+
Sbjct:  123 EAAIEKIRSNMEYVADVRVIVHTNPR-LASVPKKKPEVFECGLGGKTPEEKFEYALEILGKDVRASEIFSEGAFVDAIAVTKGKGFQGPVKRWGIRIQYGKAARSSKGRHIGSLGPWTPSRTMWTVPQAGQMGYHRRTEYNKQILK 267          

HSP 2 Score: 33.4982 bits (75), Expect = 2.190e-23
Identity = 13/28 (46.43%), Postives = 19/28 (67.86%), Query Frame = 2
Query:  599 PWGGFPHYGIVKKDYLNVKGCLVGTIKK 682
            P GGF  YG+V+ DY+ +KG + G  K+
Sbjct:  279 PDGGFVRYGLVRNDYVMIKGSVPGPTKR 306          
BLAST of EY692130 vs. ExPASy Swiss-Prot
Match: RL3_PYRFU (50S ribosomal protein L3P OS=Pyrococcus furiosus GN=rpl3p PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.807e-23
Identity = 65/166 (39.16%), Postives = 90/166 (54.22%), Query Frame = 1
Query:  109 QLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTENEQEGLQAWQGWDGSLTLA*LNLTGTEKGLTPMG 606
            QLE + K   +V V A    +      +KK  +ME  + G ++ EK +Y      K++ V  V ++ E++D+I VTKGKG +G V RWG+     K  +G RKV  IG WHPARV +TV  AGQ G+HHRTE  +  +    G +G L L       TE  +TP G
Sbjct:  150 QLEDMIKEGEIVDVRAIVATQPWVIKLKKKPEVMEYAIGGTSVEEKFNYIKEKLGKELRVGEVLKEGELLDVIAVTKGKGTQGPVKRWGIKLRAHKDSKGRRKVGSIGPWHPARVMWTVPMAGQMGFHHRTELNKRLIAI--GENGKLKLD----ENTEIEITPKG 309          
The following BLAST results are available for this feature:
BLAST of EY692130 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 84
Match NameE-valueIdentityDescription
RL3_METVA3.019e-2638.4650S ribosomal protein L3P OS=Methanococcus vanniel... [more]
RL3_ARCFU3.931e-2643.0850S ribosomal protein L3P OS=Archaeoglobus fulgidu... [more]
RL3_PYRAE2.663e-2439.5850S ribosomal protein L3P OS=Pyrobaculum aerophilu... [more]
RL3_PYRHO5.656e-2439.1150S ribosomal protein L3P OS=Pyrococcus horikoshii... [more]
RL3_PYRCJ5.869e-2441.6750S ribosomal protein L3P OS=Pyrobaculum calidifon... [more]
RL3_SULTO1.293e-2340.9750S ribosomal protein L3P OS=Sulfolobus tokodaii G... [more]
RL3_META31.684e-2336.6250S ribosomal protein L3P OS=Methanococcus aeolicu... [more]
RL3_PYRAR2.190e-2338.8950S ribosomal protein L3P OS=Pyrobaculum arsenatic... [more]
RL3_METTH2.190e-2336.9950S ribosomal protein L3P OS=Methanobacterium ther... [more]
RL3_PYRFU2.807e-2339.1650S ribosomal protein L3P OS=Pyrococcus furiosus G... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-097-B10-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY692130 ID=EY692130; Name=EY692130; organism=Citrus sinensis; type=EST; length=877bp
GAGGTGAGAAGAAGGTTCTACAAGAACTGGTGCAAATCCAAGAAGAAGGC
TTTCACAAAATACTCAAAGCAGTATGAAACAGATGAAGGGAAGAAAAGTA
TCCAAGCTCAGCTGGAGAAGATCAAGAAGTATGCATCTGTTGTTCGTGTT
CTTGCTCACACTCAGATTAGGAAAATGAAGGGTTTGAAGCAGAAGAAGGC
ACACCTGATGGAAATCCAGGTCAATGGTGGCACCATTGCTGAAAAAGTTG
ACTATGCATATGGCTTCTTTGAAAAGCAAATTCCTGTTGATGCTGTTTTC
CAGAAGGATGAGATGATTGACATCATCGGTGTCACGAAAGGTAAAGGTTA
TGAAGGTGTTGTCACCCGTTGGGGTGTTACCCGCCTTCCTCGCAAGACTC
ACAGAGGTCTGCGTAAGGTGGCTTGTATTGGTGCCTGGCATCCTGCTAGG
GTTTCCTTCACAGTTGCCAGAGCTGGTCAGAATGGATACCATCATCGTAC
TGAAAATGAACAAGAAGGTTTACAAGCTTGGCAAGGGTGGGACGGGAGTC
TCACACTGGCTTAACTGAATTTGACAGGGACTGAGAAAGGACTTACCCCC
ATGGGGTGGCTTTCCTCACTATGGGATTGTGAAAAAAGATTATTTGAATG
TTAAGGGATGCTTGGTTGGGACCATAAAAAAGGGGGGTCTACGTTTCTTC
AGGTCGTTTCTCCAAACAAAAAATTTTCGTTTAAGTCTTTTGGAGGAATC
AAACATTTACGTTTACTTTGATTACCTCTTTCCAAGGTTTGGGGGAATGG
GCGCCTTTTTCAACATTACCATGGTAAGAAACAAAAAATTATATAGTGGA
CCGCATGGGAGAACCTAAAATTTGGGT
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