EY692075

Overview
NameEY692075
Unique NameEY692075
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length540
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11493 contig Csv1_Contig11493:749..1288. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY692075 vs. ExPASy Swiss-Prot
Match: GLNA_PINSY (Glutamine synthetase cytosolic isozyme OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 3.861e-40
Identity = 75/81 (92.59%), Postives = 79/81 (97.53%), Query Frame = 3
Query:   42 RHGEHTAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 284
            RH EH +AYGEGNERRLTGRHETAD+NTFSWGVANRGAS+RVGRDTEKEGKGYFEDRRPASNMDPY+VTSMIAETTILWKP
Sbjct:  277 RHKEHISAYGEGNERRLTGRHETADMNTFSWGVANRGASVRVGRDTEKEGKGYFEDRRPASNMDPYIVTSMIAETTILWKP 357          
BLAST of EY692075 vs. ExPASy Swiss-Prot
Match: GLNA3_MEDSA (Glutamine synthetase nodule isozyme OS=Medicago sativa GN=GS1 PE=2 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 3.861e-40
Identity = 75/84 (89.29%), Postives = 80/84 (95.24%), Query Frame = 3
Query:   33 LGKRHGEHTAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 284
            LG RH EH AAYGEGNERRLTG+HET DINTFSWGVANRGAS+RVGRDTEK+GKGYFEDRRP+SNMDPYVVTSMIAETT+LWKP
Sbjct:  273 LGLRHKEHIAAYGEGNERRLTGKHETTDINTFSWGVANRGASVRVGRDTEKDGKGYFEDRRPSSNMDPYVVTSMIAETTLLWKP 356          
BLAST of EY692075 vs. ExPASy Swiss-Prot
Match: GLNA2_SOYBN (Glutamine synthetase cytosolic isozyme 2 OS=Glycine max PE=2 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 3.861e-40
Identity = 78/84 (92.86%), Postives = 79/84 (94.05%), Query Frame = 3
Query:   33 LGKRHGEHTAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 284
            L KRH EH AAYGEGNERRLTGRHETAD+NTF WGVANRGASIRVGRDTEK GKGYFEDRRPASNMDPYVVTSMIAETTILWKP
Sbjct:  273 LEKRHKEHIAAYGEGNERRLTGRHETADMNTFVWGVANRGASIRVGRDTEKAGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 356          
BLAST of EY692075 vs. ExPASy Swiss-Prot
Match: GLNA1_MAIZE (Glutamine synthetase root isozyme 1 OS=Zea mays GN=GLN6 PE=2 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 3.861e-40
Identity = 77/82 (93.90%), Postives = 78/82 (95.12%), Query Frame = 3
Query:   33 LGKRHGEHTAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILW 278
            LGKRH EH AAYGEGNERRLTGRHETADINTF WGVANRGASIRVGRDTE+EGKGYFEDRRPASNMDPYVVT MIAETTILW
Sbjct:  273 LGKRHKEHIAAYGEGNERRLTGRHETADINTFKWGVANRGASIRVGRDTEREGKGYFEDRRPASNMDPYVVTGMIAETTILW 354          
BLAST of EY692075 vs. ExPASy Swiss-Prot
Match: GLN11_ARATH (Glutamine synthetase cytosolic isozyme 1-1 OS=Arabidopsis thaliana GN=GLN1-1 PE=1 SV=2)

HSP 1 Score: 163.696 bits (413), Expect = 5.042e-40
Identity = 77/84 (91.67%), Postives = 78/84 (92.86%), Query Frame = 3
Query:   33 LGKRHGEHTAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 284
            LG RH EH AAYGEGNERRLTG HETADINTF WGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPY+VTSMIAETTILW P
Sbjct:  273 LGLRHKEHIAAYGEGNERRLTGHHETADINTFLWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYIVTSMIAETTILWNP 356          
BLAST of EY692075 vs. ExPASy Swiss-Prot
Match: GLNA_LACSA (Glutamine synthetase OS=Lactuca sativa PE=2 SV=2)

HSP 1 Score: 163.31 bits (412), Expect = 6.585e-40
Identity = 78/82 (95.12%), Postives = 78/82 (95.12%), Query Frame = 3
Query:   33 LGKRHGEHTAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILW 278
            LG RH EH AAYGEGNERRLTGRHETADINTF WGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILW
Sbjct:  273 LGLRHKEHIAAYGEGNERRLTGRHETADINTFLWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILW 354          
BLAST of EY692075 vs. ExPASy Swiss-Prot
Match: GLNA4_PEA (Glutamine synthetase root isozyme B OS=Pisum sativum GN=GS3B PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 1.467e-39
Identity = 76/83 (91.57%), Postives = 79/83 (95.18%), Query Frame = 3
Query:   33 LGKRHGEHTAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWK 281
            LG RH EH AAYGEGNERRLTG+HETADIN FSWGVANRG+SIRVGRDTEK+GKGYFEDRRPASNMDPYVVTSMIAETTILWK
Sbjct:  273 LGLRHKEHIAAYGEGNERRLTGKHETADINVFSWGVANRGSSIRVGRDTEKDGKGYFEDRRPASNMDPYVVTSMIAETTILWK 355          
BLAST of EY692075 vs. ExPASy Swiss-Prot
Match: GLNA3_PHAVU (Glutamine synthetase N-1 OS=Phaseolus vulgaris GN=Gln-gamma PE=2 SV=2)

HSP 1 Score: 162.155 bits (409), Expect = 1.467e-39
Identity = 76/84 (90.48%), Postives = 79/84 (94.05%), Query Frame = 3
Query:   33 LGKRHGEHTAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 284
            L KRH EH AAYGEGNERRLTG+HETAD+NTF WGVANRGASIRVGRDTEK GKGYFEDRRPASNMDPYVVTSMIAETT+LWKP
Sbjct:  273 LEKRHKEHIAAYGEGNERRLTGKHETADMNTFIWGVANRGASIRVGRDTEKAGKGYFEDRRPASNMDPYVVTSMIAETTLLWKP 356          
BLAST of EY692075 vs. ExPASy Swiss-Prot
Match: GLNA3_PEA (Glutamine synthetase root isozyme A OS=Pisum sativum GN=GS3A PE=2 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 1.467e-39
Identity = 76/83 (91.57%), Postives = 79/83 (95.18%), Query Frame = 3
Query:   33 LGKRHGEHTAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWK 281
            LG RH EH AAYGEGNERRLTG+HETADIN FSWGVANRG+SIRVGRDTEK+GKGYFEDRRPASNMDPYVVTSMIAETTILWK
Sbjct:  273 LGLRHKEHIAAYGEGNERRLTGKHETADINVFSWGVANRGSSIRVGRDTEKDGKGYFEDRRPASNMDPYVVTSMIAETTILWK 355          
BLAST of EY692075 vs. ExPASy Swiss-Prot
Match: GLN12_ARATH (Glutamine synthetase cytosolic isozyme 1-2 OS=Arabidopsis thaliana GN=GLN1-2 PE=1 SV=2)

HSP 1 Score: 162.155 bits (409), Expect = 1.467e-39
Identity = 76/84 (90.48%), Postives = 78/84 (92.86%), Query Frame = 3
Query:   33 LGKRHGEHTAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 284
            LG RH EH +AYGEGNERRLTG HETADINTF WGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETT+LW P
Sbjct:  273 LGLRHKEHISAYGEGNERRLTGHHETADINTFLWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTLLWNP 356          
The following BLAST results are available for this feature:
BLAST of EY692075 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 87
Match NameE-valueIdentityDescription
GLNA_PINSY3.861e-4092.59Glutamine synthetase cytosolic isozyme OS=Pinus sy... [more]
GLNA3_MEDSA3.861e-4089.29Glutamine synthetase nodule isozyme OS=Medicago sa... [more]
GLNA2_SOYBN3.861e-4092.86Glutamine synthetase cytosolic isozyme 2 OS=Glycin... [more]
GLNA1_MAIZE3.861e-4093.90Glutamine synthetase root isozyme 1 OS=Zea mays GN... [more]
GLN11_ARATH5.042e-4091.67Glutamine synthetase cytosolic isozyme 1-1 OS=Arab... [more]
GLNA_LACSA6.585e-4095.12Glutamine synthetase OS=Lactuca sativa PE=2 SV=2[more]
GLNA4_PEA1.467e-3991.57Glutamine synthetase root isozyme B OS=Pisum sativ... [more]
GLNA3_PHAVU1.467e-3990.48Glutamine synthetase N-1 OS=Phaseolus vulgaris GN=... [more]
GLNA3_PEA1.467e-3991.57Glutamine synthetase root isozyme A OS=Pisum sativ... [more]
GLN12_ARATH1.467e-3990.48Glutamine synthetase cytosolic isozyme 1-2 OS=Arab... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C2-003-106-D11-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY692075 ID=EY692075; Name=EY692075; organism=Citrus sinensis; type=EST; length=540bp
CCGGGGAATTCCCGAGGGTCGACCCACGCGTCCTGGGGAAACGCCATGGG
GAACACACTGCTGCTTATGGAGAGGGCAACGAAAGAAGACTGACAGGTCG
ACATGAAACTGCAGATATCAACACTTTTTCTTGGGGTGTCGCTAACAGAG
GTGCCTCCATTCGCGTTGGTCGTGACACTGAGAAAGAAGGAAAGGGATAC
TTTGAAGACAGAAGGCCAGCTTCAAACATGGACCCATATGTTGTGACTTC
AATGATCGCTGAAACCACCATTCTCTGGAAGCCTTAGAAAACAAACTTGA
GCATGGATGACGAAGAAGAAATCGAGGGAAAATGAAAGCTTAAATTGAAC
CCACCACAAAAATAATTCTTATGTTTTTATAATTTGTCAATGCGTTTAAG
TCTGTTGTTTGAATTTGTTCCTTGCCATTCAAAACTGTACTCTGTTTCTC
TTGTTCCTCATTCTTTGGGATGCTCAGTTGTGATTACTATATTATAGTTT
AAAACTATTTCCCTTCTGTTTAAAAAAAAAAAAAAAAGGG
back to top