EY692075

Overview
NameEY692075
Unique NameEY692075
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length540
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11493 contig Csv1_Contig11493:749..1288. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY692075 vs. ExPASy Swiss-Prot
Match: GLNA_ASHGO (Glutamine synthetase OS=Ashbya gossypii GN=GLN1 PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 5.984e-25
Identity = 55/78 (70.51%), Postives = 60/78 (76.92%), Query Frame = 3
Query:   33 LGKRHGEHTAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAET 266
            L KRH EH   YG  NE RLTGRHETA + TFS GVANRGASIR+ R   KEG GYFEDRRPASN+DPY+VT +I ET
Sbjct:  273 LSKRHKEHIKLYGSDNELRLTGRHETASMATFSSGVANRGASIRIPRSVSKEGFGYFEDRRPASNIDPYLVTGIICET 350          
BLAST of EY692075 vs. ExPASy Swiss-Prot
Match: GLNA_SUIBO (Glutamine synthetase OS=Suillus bovinus GN=GLNA PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.021e-24
Identity = 56/83 (67.47%), Postives = 61/83 (73.49%), Query Frame = 3
Query:   33 LGKRHGEHTAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWK 281
            L KRH EH A YGE N+ RLTGRHET  I  FS GVANRGASIRV R    +G GY EDRRPASN+DPY VT +I ETT+L K
Sbjct:  272 LSKRHAEHIAVYGEDNDLRLTGRHETGHIGDFSSGVANRGASIRVPRHVAAQGYGYLEDRRPASNIDPYRVTGIIVETTVLDK 354          
BLAST of EY692075 vs. ExPASy Swiss-Prot
Match: GLNA_CANGA (Glutamine synthetase OS=Candida glabrata GN=GLN1 PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.333e-24
Identity = 53/78 (67.95%), Postives = 61/78 (78.21%), Query Frame = 3
Query:   33 LGKRHGEHTAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAET 266
            L KRH EH   YG  NE+RLTGRHETA + +FS GVANRGASIR+ R   KEG GYFEDRRPASN+DPY+VT ++ ET
Sbjct:  274 LSKRHNEHIKLYGADNEQRLTGRHETASMTSFSSGVANRGASIRIPRPVAKEGFGYFEDRRPASNIDPYLVTGIMCET 351          
BLAST of EY692075 vs. ExPASy Swiss-Prot
Match: GLNA_NEUCR (Glutamine synthetase OS=Neurospora crassa GN=gln-1 PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 2.970e-24
Identity = 51/78 (65.38%), Postives = 62/78 (79.49%), Query Frame = 3
Query:   33 LGKRHGEHTAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAET 266
            L  RH EH A YGEGN++RLTGRHET  I++F++GVANRGASIR+ R+   +G GYFEDRRPASN DPY +T +I ET
Sbjct:  278 LEARHKEHIAVYGEGNDKRLTGRHETGSIDSFTYGVANRGASIRIPRECGAKGYGYFEDRRPASNADPYQITGIIMET 355          
BLAST of EY692075 vs. ExPASy Swiss-Prot
Match: GLNA_YARLI (Glutamine synthetase OS=Yarrowia lipolytica GN=GLN1 PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 3.878e-24
Identity = 52/78 (66.67%), Postives = 59/78 (75.64%), Query Frame = 3
Query:   33 LGKRHGEHTAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAET 266
            L  RH EH A YGE N+ RLTGRHET  I +FS GVANRG SIR+ R   KEG GYFEDRRPASN+DPY+VT ++ ET
Sbjct:  265 LAARHKEHIAVYGEDNDMRLTGRHETGSIGSFSSGVANRGCSIRIPRSVAKEGYGYFEDRRPASNIDPYLVTGIMTET 342          
BLAST of EY692075 vs. ExPASy Swiss-Prot
Match: GLNA_DEBHA (Glutamine synthetase OS=Debaryomyces hansenii GN=GLN1 PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 3.878e-24
Identity = 52/78 (66.67%), Postives = 60/78 (76.92%), Query Frame = 3
Query:   33 LGKRHGEHTAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAET 266
            L KRH EH   YG  N++RLTGRHETA I  FS GVANRGAS+R+ R   KEG GYFEDRRPASN+DPY+VT ++ ET
Sbjct:  273 LAKRHKEHMLLYGADNDQRLTGRHETASIEGFSSGVANRGASVRIPRSVAKEGYGYFEDRRPASNIDPYLVTGIMVET 350          
BLAST of EY692075 vs. ExPASy Swiss-Prot
Match: GLNA_COLGL (Glutamine synthetase OS=Colletotrichum gloeosporioides GN=GLN1 PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 5.065e-24
Identity = 51/75 (68.00%), Postives = 60/75 (80.00%), Query Frame = 3
Query:   42 RHGEHTAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAET 266
            RH EH A YGEGNE+RLTGRHET  I+ FS+GVANRGASIR+ R+   +G GYFEDRRPASN DPY +T ++ ET
Sbjct:  279 RHKEHIAVYGEGNEKRLTGRHETGAIDQFSYGVANRGASIRIPREYTAKGYGYFEDRRPASNADPYRITGILMET 353          
BLAST of EY692075 vs. ExPASy Swiss-Prot
Match: GLNA_YEAST (Glutamine synthetase OS=Saccharomyces cerevisiae GN=GLN1 PE=1 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 6.616e-24
Identity = 51/78 (65.38%), Postives = 59/78 (75.64%), Query Frame = 3
Query:   33 LGKRHGEHTAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAET 266
            L KRH EH   YG  N+ RLTGRHETA +  FS GVANRG+SIR+ R   KEG GYFEDRRPASN+DPY+VT ++ ET
Sbjct:  274 LSKRHAEHIKLYGSDNDMRLTGRHETASMTAFSSGVANRGSSIRIPRSVAKEGYGYFEDRRPASNIDPYLVTGIMCET 351          
BLAST of EY692075 vs. ExPASy Swiss-Prot
Match: GLNA_CRYNE (Glutamine synthetase OS=Cryptococcus neoformans GN=GLN1 PE=2 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 8.640e-24
Identity = 52/81 (64.20%), Postives = 63/81 (77.78%), Query Frame = 3
Query:   33 LGKRHGEHTAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTIL 275
            L K+H EH A YGE N+ RLTG+HETA + TFS GVANRGASIR+ R    +G GY EDRRPASN+DPY VT+++ ETT+L
Sbjct:  276 LEKKHLEHIAVYGEDNDLRLTGKHETASMTTFSAGVANRGASIRIPRHVGAQGYGYLEDRRPASNVDPYRVTAILVETTVL 356          
BLAST of EY692075 vs. ExPASy Swiss-Prot
Match: GLNA_TUBBO (Glutamine synthetase OS=Tuber borchii GN=GLN1 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.248e-22
Identity = 49/78 (62.82%), Postives = 59/78 (75.64%), Query Frame = 3
Query:   33 LGKRHGEHTAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAET 266
            L  RH EH A YG+ N  RLTGRHET +I+ FS+GVA+RG+SIR+ R   KEGKGYFEDRRPASN  PY +T ++ ET
Sbjct:  276 LSTRHAEHIAVYGDDNTLRLTGRHETGNIDAFSYGVADRGSSIRIPRSCAKEGKGYFEDRRPASNACPYQITGIMMET 353          
The following BLAST results are available for this feature:
BLAST of EY692075 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 87
Match NameE-valueIdentityDescription
GLNA_ASHGO5.984e-2570.51Glutamine synthetase OS=Ashbya gossypii GN=GLN1 PE... [more]
GLNA_SUIBO1.021e-2467.47Glutamine synthetase OS=Suillus bovinus GN=GLNA PE... [more]
GLNA_CANGA1.333e-2467.95Glutamine synthetase OS=Candida glabrata GN=GLN1 P... [more]
GLNA_NEUCR2.970e-2465.38Glutamine synthetase OS=Neurospora crassa GN=gln-1... [more]
GLNA_YARLI3.878e-2466.67Glutamine synthetase OS=Yarrowia lipolytica GN=GLN... [more]
GLNA_DEBHA3.878e-2466.67Glutamine synthetase OS=Debaryomyces hansenii GN=G... [more]
GLNA_COLGL5.065e-2468.00Glutamine synthetase OS=Colletotrichum gloeosporio... [more]
GLNA_YEAST6.616e-2465.38Glutamine synthetase OS=Saccharomyces cerevisiae G... [more]
GLNA_CRYNE8.640e-2464.20Glutamine synthetase OS=Cryptococcus neoformans GN... [more]
GLNA_TUBBO1.248e-2262.82Glutamine synthetase OS=Tuber borchii GN=GLN1 PE=2... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-106-D11-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY692075 ID=EY692075; Name=EY692075; organism=Citrus sinensis; type=EST; length=540bp
CCGGGGAATTCCCGAGGGTCGACCCACGCGTCCTGGGGAAACGCCATGGG
GAACACACTGCTGCTTATGGAGAGGGCAACGAAAGAAGACTGACAGGTCG
ACATGAAACTGCAGATATCAACACTTTTTCTTGGGGTGTCGCTAACAGAG
GTGCCTCCATTCGCGTTGGTCGTGACACTGAGAAAGAAGGAAAGGGATAC
TTTGAAGACAGAAGGCCAGCTTCAAACATGGACCCATATGTTGTGACTTC
AATGATCGCTGAAACCACCATTCTCTGGAAGCCTTAGAAAACAAACTTGA
GCATGGATGACGAAGAAGAAATCGAGGGAAAATGAAAGCTTAAATTGAAC
CCACCACAAAAATAATTCTTATGTTTTTATAATTTGTCAATGCGTTTAAG
TCTGTTGTTTGAATTTGTTCCTTGCCATTCAAAACTGTACTCTGTTTCTC
TTGTTCCTCATTCTTTGGGATGCTCAGTTGTGATTACTATATTATAGTTT
AAAACTATTTCCCTTCTGTTTAAAAAAAAAAAAAAAAGGG
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