EY692035

Overview
NameEY692035
Unique NameEY692035
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length962
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY692035 vs. ExPASy Swiss-Prot
Match: RSSA_SALSA (40S ribosomal protein SA OS=Salmo salar GN=rpsa PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 2.391e-18
Identity = 58/162 (35.80%), Postives = 79/162 (48.77%), Query Frame = 2
Query:   17 NFPGRTARPTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYRXXXXXXXXXXXXXXXIDYATAEYSMNLTSGE-QWPSQIAD------GGWAGGEVQKPIPVVLY--------FPEAAPTAIVPLGGDG----WDAVPA 445
            N P      TDSP+RYVDI IP NNKG HS+G ++W+L+R VL+MRGTI   H W+VM DL+FYR                + A AE ++     + +W +  AD        W+ G     +P+  +        F EAA  +  P   +G    W A PA
Sbjct:  141 NIPTIAMCNTDSPLRYVDIAIPCNNKGHHSVGLMWWMLSREVLRMRGTISREHPWEVMPDLYFYRDPEEIEKE--------EQAAAEKAVGKEEFQGEWTAPTADFAQPEVADWSEGVAVPSVPIQQFPAGIEGKSFTEAAAPSKAPAAAEGFAEDWSAQPA 294          
BLAST of EY692035 vs. ExPASy Swiss-Prot
Match: RSSA_XENLA (40S ribosomal protein SA OS=Xenopus laevis GN=rpsa PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 3.123e-18
Identity = 53/150 (35.33%), Postives = 73/150 (48.67%), Query Frame = 2
Query:   17 NFPGRTARPTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYRXXXXXXXXXXXXXXXIDYATAEYSMNLTSGE-QWPSQIAD------GGWAGGEVQKPIPVVLYFPEAAPTAIVPLGGDGWDAVPA 445
            N P      TDSP+RYVDI IP NNKG HS+G ++W+LAR VL+MRGTI   H W+VM DL+FYR                + A AE +      + +W + +A+        W+ G     +P+  +  E       P   + W   PA
Sbjct:  141 NIPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAREVLRMRGTISREHPWEVMPDLYFYRDPEEIEKE--------EQAAAEKATTKEEFQGEWTAPVAEFPQAEVADWSEGVQVPSVPIQQFTAERTDVPPAPKPTEDWSTQPA 282          
BLAST of EY692035 vs. ExPASy Swiss-Prot
Match: RSSA_SPAAU (40S ribosomal protein SA OS=Sparus aurata GN=rpsa PE=2 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 3.123e-18
Identity = 54/150 (36.00%), Postives = 74/150 (49.33%), Query Frame = 2
Query:   17 NFPGRTARPTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYRXXXXXXXXXXXXXXXIDYATAEYSMNLTSGE-QWPSQIAD------GGWAGGEVQKPIPVVLYFPEAAPTAIVPLGGDGWDAVPA 445
            N P      TDSP+RYVDI IP NNKG HS+G ++W+LAR VL+MRGTI   H W+VM DL+FYR                + A AE ++     + +W +  A+        W+ G     +P +  FP   P     +  + W   PA
Sbjct:  141 NIPTIALCNTDSPLRYVDIAIPCNNKGHHSVGLMWWMLAREVLRMRGTISREHPWEVMPDLYFYRDPEEIEKE--------EQAAAEKAVGKEEFQGEWSAPAAEFTQPEVADWSEGVAVPSVP-IQQFPAGTPAPAPAVKTEDWSTQPA 281          
BLAST of EY692035 vs. ExPASy Swiss-Prot
Match: RSSA_ICTPU (40S ribosomal protein SA OS=Ictalurus punctatus GN=rpsa PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 4.078e-18
Identity = 66/184 (35.87%), Postives = 89/184 (48.37%), Query Frame = 2
Query:   17 NFPGRTARPTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYRXXXXXXXXXXXXXXXIDYATAEYSMNLTSGE-QWPSQIAD------GGWAGGEVQKPIPVVLYFP---EAAPTAIVPLG----------GDGWDAVPAHPRARVTAHPMVSRCGSWGAA 508
            N P      TDSP+RYVDI IP NNKG HS+G ++W+LAR VL+MRGTI   H W+VM DL+FYR                + A AE ++     + +W + +AD        W+ G VQ P   +  FP   EAA  A   +            + W A PA      +A P  ++ G WG +
Sbjct:  141 NIPTIALCNTDSPLRYVDIAIPCNNKGPHSVGLMWWMLAREVLRMRGTISREHPWEVMPDLYFYRDPEEIEKE--------EQAAAEKAVGKEEFQGEWSAPVADIAQLEVPDWSEG-VQVPSVPIQQFPAGIEAATAAAAVVAAKPGPTTEGYSEDWSAQPA--TEDWSAAP-TAQAGDWGGS 312          
BLAST of EY692035 vs. ExPASy Swiss-Prot
Match: RSSA_XENTR (40S ribosomal protein SA OS=Xenopus tropicalis GN=rpsa PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 6.956e-18
Identity = 57/159 (35.85%), Postives = 76/159 (47.80%), Query Frame = 2
Query:   17 NFPGRTARPTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYRXXXXXXXXXXXXXXXIDYATAEYSMNLTSGE-QWPSQIAD------GGWAGGEVQKPIPVVLY------FPEAAPTA----IVPLGGDGWDAVP 442
            N P      TDSP+RYVDI IP NNKG HS+G ++W+LAR VL+MRGTI   H W+VM DL+FYR                + A AE +      + +W + +A+        W+ G     +P+  +       P A P A      P   D W A P
Sbjct:  141 NIPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAREVLRMRGTISREHPWEVMPDLYFYRDPEEIEKE--------EQAAAEKATTKEEYQGEWTAPVAEFPQAEVADWSEGVQVPSVPIQQFPAERPEIPAAKPAAEDWSSQPASTDDWSAAP 291          
BLAST of EY692035 vs. ExPASy Swiss-Prot
Match: RSSA_SOLSE (40S ribosomal protein SA OS=Solea senegalensis GN=rpsa PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 9.085e-18
Identity = 53/136 (38.97%), Postives = 71/136 (52.21%), Query Frame = 2
Query:   17 NFPGRTARPTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYRXXXXXXXXXXXXXXXIDYATAEYSMNLTSGE-QW---PSQIAD---GGWAGGEVQKPIPVVLYFPEAAPTA 403
            N P      TDSP+RYVDI IP NNKG HS+G ++W+LAR VL+MRGTI   H WDVM DL+FYR                + A AE ++     + +W   P++ A      W+ G     +P+  + P  A  A
Sbjct:  141 NIPTIALCNTDSPLRYVDIAIPCNNKGHHSVGLMWWMLAREVLRMRGTISREHPWDVMPDLYFYRDPEEIEKE--------EQAAAEKAVGKEEFQGEWSAPPAEFAQPEVADWSEGVAVPSVPIQQFAPATAAAA 268          
BLAST of EY692035 vs. ExPASy Swiss-Prot
Match: RSSA_TAEGU (40S ribosomal protein SA OS=Taeniopygia guttata GN=RPSA PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 4.509e-17
Identity = 40/65 (61.54%), Postives = 48/65 (73.85%), Query Frame = 2
Query:   17 NFPGRTARPTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYR 211
            N P      TDSP+RYVDI IP NNKG HS+G ++W+LAR VL+MRGTI   H W+VM DL+FYR
Sbjct:  141 NIPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAREVLRMRGTISREHPWEVMPDLYFYR 205          
BLAST of EY692035 vs. ExPASy Swiss-Prot
Match: RSSA_SHEEP (40S ribosomal protein SA OS=Ovis aries GN=RPSA PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 4.509e-17
Identity = 40/65 (61.54%), Postives = 48/65 (73.85%), Query Frame = 2
Query:   17 NFPGRTARPTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYR 211
            N P      TDSP+RYVDI IP NNKG HS+G ++W+LAR VL+MRGTI   H W+VM DL+FYR
Sbjct:  141 NLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAREVLRMRGTISREHPWEVMPDLYFYR 205          
BLAST of EY692035 vs. ExPASy Swiss-Prot
Match: RSSA_RAT (40S ribosomal protein SA OS=Rattus norvegicus GN=Rpsa PE=1 SV=3)

HSP 1 Score: 88.9669 bits (219), Expect = 4.509e-17
Identity = 40/65 (61.54%), Postives = 48/65 (73.85%), Query Frame = 2
Query:   17 NFPGRTARPTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYR 211
            N P      TDSP+RYVDI IP NNKG HS+G ++W+LAR VL+MRGTI   H W+VM DL+FYR
Sbjct:  141 NLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAREVLRMRGTISREHPWEVMPDLYFYR 205          
BLAST of EY692035 vs. ExPASy Swiss-Prot
Match: RSSA_PIG (40S ribosomal protein SA OS=Sus scrofa GN=RPSA PE=1 SV=3)

HSP 1 Score: 88.9669 bits (219), Expect = 4.509e-17
Identity = 40/65 (61.54%), Postives = 48/65 (73.85%), Query Frame = 2
Query:   17 NFPGRTARPTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYR 211
            N P      TDSP+RYVDI IP NNKG HS+G ++W+LAR VL+MRGTI   H W+VM DL+FYR
Sbjct:  141 NLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAREVLRMRGTISREHPWEVMPDLYFYR 205          
The following BLAST results are available for this feature:
BLAST of EY692035 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 135
Match NameE-valueIdentityDescription
RSSA_SALSA2.391e-1835.8040S ribosomal protein SA OS=Salmo salar GN=rpsa PE... [more]
RSSA_XENLA3.123e-1835.3340S ribosomal protein SA OS=Xenopus laevis GN=rpsa... [more]
RSSA_SPAAU3.123e-1836.0040S ribosomal protein SA OS=Sparus aurata GN=rpsa ... [more]
RSSA_ICTPU4.078e-1835.8740S ribosomal protein SA OS=Ictalurus punctatus GN... [more]
RSSA_XENTR6.956e-1835.8540S ribosomal protein SA OS=Xenopus tropicalis GN=... [more]
RSSA_SOLSE9.085e-1838.9740S ribosomal protein SA OS=Solea senegalensis GN=... [more]
RSSA_TAEGU4.509e-1761.5440S ribosomal protein SA OS=Taeniopygia guttata GN... [more]
RSSA_SHEEP4.509e-1761.5440S ribosomal protein SA OS=Ovis aries GN=RPSA PE=... [more]
RSSA_RAT4.509e-1761.5440S ribosomal protein SA OS=Rattus norvegicus GN=R... [more]
RSSA_PIG4.509e-1761.5440S ribosomal protein SA OS=Sus scrofa GN=RPSA PE=... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-086-H01-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY692035 ID=EY692035; Name=EY692035; organism=Citrus sinensis; type=EST; length=962bp
TGGCAGTCAGGGTCGGAATTTCCCGGGTCGGACCGCGCGTCCGACTGACT
CACCTATGCGTTATGTTGATATTGGCATTCCTGCCAATAACAAGGGCAAA
CACAGCATTGGGTGTCTCTTCTGGCTTTTGGCTAGAATGGTTCTCCAGAT
GCGCGGCACTATTCGTCCTGGCCACAAGTGGGATGTGATGGTCGATCTGT
TCTTCTACAGGGAGCCAGAAGAAACCAAGCAGGCTGAAGAAGAAGAAACT
GCTGCTATTGATTATGCTACAGCAGAGTACAGCATGAATCTTACCAGTGG
TGAGCAATGGCCTTCCCAAATTGCTGATGGTGGGTGGGCGGGTGGTGAAG
TTCAGAAGCCCATTCCTGTTGTTCTCTATTTCCCAGAAGCAGCACCAACA
GCTATAGTTCCTTTGGGTGGGGATGGATGGGATGCAGTGCCGGCACACCC
ACGGGCAAGAGTTACTGCACACCCCATGGTCAGCAGGTGCGGCTCGTGGG
GTGCCGCTGGACCCATGCGTAGTGGCGAGTGAATAGATTAGAGTGAGAGG
GTTATGCCGCTTCCTAAGCATCCACTTCTGACACATAAATGTTTTGATTT
ATAACTTCTTTTTGTCACCGCTGAGGAAATGGGCCGTTACCCAGTAGGGT
AAGATATGACATAAACGAAGACGCAAGAAAACACGACTATATATGTACAA
ACCTGTCCAAACTAAACAACAACTACGGTAAACCCGTATACCGTACCCTA
AAACTTCTATAGTCCACTATTTATAAAATAAAATACCATGAAGTTTACGA
AAGAGGGAATATGGAATCTACCTGTACCGACGCACCACATGGGCATTGGC
AAAACCACTATGTCAGTCACAAAACAAAACGTACGACAATACCTACTGCG
CGCGCGAAGCCAAACCTAGAAAAAACACTTCAAAGAATACACATCACCCC
CAATGAAATAAA
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