EY692023

Overview
NameEY692023
Unique NameEY692023
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1010
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY692023 vs. ExPASy Swiss-Prot
Match: TBA_TRYCR (Tubulin alpha chain OS=Trypanosoma cruzi PE=3 SV=1)

HSP 1 Score: 269.24 bits (687), Expect = 2.626e-71
Identity = 132/170 (77.65%), Postives = 141/170 (82.94%), Query Frame = 3
Query:   45 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFQCXXXXXXXXXXXXFFWRGCLLT*EKKSKLGF 554
            MRE I IHIGQAG QVGNACWEL+CLEHGIQPDG MPSDKT+G  DDAFNTFFSETGAGKHVPRAVF+DLEPTV+DE+RTGTYRQLFHPEQLISGKEDAANN+ARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLV+                 R   +   KKSKLG+
Sbjct:    1 MREAICIHIGQAGCQVGNACWELFCLEHGIQPDGAMPSDKTIGVEDDAFNTFFSETGAGKHVPRAVFLDLEPTVVDEIRTGTYRQLFHPEQLISGKEDAANNYARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVYHAVGGGTGSGLGALLLER-LSVDYGKKSKLGY 169          
BLAST of EY692023 vs. ExPASy Swiss-Prot
Match: TBA6_MAIZE (Tubulin alpha-6 chain OS=Zea mays GN=TUBA6 PE=2 SV=1)

HSP 1 Score: 269.24 bits (687), Expect = 2.626e-71
Identity = 133/170 (78.24%), Postives = 141/170 (82.94%), Query Frame = 3
Query:   45 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFQCXXXXXXXXXXXXFFWRGCLLT*EKKSKLGF 554
            MRE ISIHIGQAGIQVGNACWELYCLEHGI+PDG MPSD +VG   DAFNTFFSETG+GKHVPRA+FVDLEPTVIDEVRTG+YRQLFHPEQLISGKEDAANNFARGHYT+GKEIVDLCLDR+RKLADNCTGLQGFLVF                 R   +   KKSKLGF
Sbjct:    1 MREIISIHIGQAGIQVGNACWELYCLEHGIEPDGTMPSDTSVGVAHDAFNTFFSETGSGKHVPRAIFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLER-LSVDYGKKSKLGF 169          
BLAST of EY692023 vs. ExPASy Swiss-Prot
Match: TBA3_ELEIN (Tubulin alpha-3 chain OS=Eleusine indica GN=TUBA3 PE=2 SV=1)

HSP 1 Score: 269.24 bits (687), Expect = 2.626e-71
Identity = 133/170 (78.24%), Postives = 141/170 (82.94%), Query Frame = 3
Query:   45 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFQCXXXXXXXXXXXXFFWRGCLLT*EKKSKLGF 554
            MRE ISIHIGQAGIQVGNACWELYCLEHGI+PDG MPSD +VG   DAFNTFFSETG+GKHVPRA+FVDLEPTVIDEVRTG+YRQLFHPEQLISGKEDAANNFARGHYT+GKEIVDLCLDR+RKLADNCTGLQGFLVF                 R   +   KKSKLGF
Sbjct:    1 MREIISIHIGQAGIQVGNACWELYCLEHGIEPDGTMPSDTSVGVAHDAFNTFFSETGSGKHVPRAIFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLER-LSVDYGKKSKLGF 169          
BLAST of EY692023 vs. ExPASy Swiss-Prot
Match: TBAN_PHYPO (Tubulin alpha-1B chain OS=Physarum polycephalum GN=ALTBN PE=2 SV=2)

HSP 1 Score: 268.47 bits (685), Expect = 4.480e-71
Identity = 122/138 (88.41%), Postives = 133/138 (96.38%), Query Frame = 3
Query:   45 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVF 458
            MRE ISIHIGQAG QVGNACWELYCLEHGI PDGQMPSDK+VGGGDDAFNTFFSET +GKHVPRA+++DLEPTVIDE+RTGTYRQLFHPEQLI+GKEDAANN+ARGHYT+GKEIVDLCLDR+RKLAD C+GLQGFLVF
Sbjct:    1 MREIISIHIGQAGAQVGNACWELYCLEHGINPDGQMPSDKSVGGGDDAFNTFFSETSSGKHVPRAIYLDLEPTVIDEIRTGTYRQLFHPEQLITGKEDAANNYARGHYTVGKEIVDLCLDRVRKLADQCSGLQGFLVF 138          
BLAST of EY692023 vs. ExPASy Swiss-Prot
Match: TBAE_PHYPO (Tubulin alpha-2B chain OS=Physarum polycephalum GN=ALTBE PE=2 SV=1)

HSP 1 Score: 268.47 bits (685), Expect = 4.480e-71
Identity = 121/138 (87.68%), Postives = 134/138 (97.10%), Query Frame = 3
Query:   45 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVF 458
            MRE +SIHIGQAG QVGNACWELYCLEHGI+PDGQMPSDK+VGGGDDAFNTFFSET +GKHVPRA+F+DLEPTVIDE+RTGTYRQLFHPEQLI+GKEDAANN+ARGHYT+GKE+VDLCLDR+RKLAD C+GLQGFLVF
Sbjct:    1 MREILSIHIGQAGAQVGNACWELYCLEHGIKPDGQMPSDKSVGGGDDAFNTFFSETSSGKHVPRAIFLDLEPTVIDEIRTGTYRQLFHPEQLITGKEDAANNYARGHYTVGKELVDLCLDRVRKLADQCSGLQGFLVF 138          
BLAST of EY692023 vs. ExPASy Swiss-Prot
Match: TBA1_HORVU (Tubulin alpha-1 chain OS=Hordeum vulgare GN=TUBA1 PE=2 SV=1)

HSP 1 Score: 267.7 bits (683), Expect = 7.641e-71
Identity = 134/170 (78.82%), Postives = 138/170 (81.18%), Query Frame = 3
Query:   45 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFQCXXXXXXXXXXXXFFWRGCLLT*EKKSKLGF 554
            MRE ISIHIGQAGIQVGNACWELYCLEHGI  DG MPSD TVG   DAFNTFFSETGAGKHVPRA+FVDLEPTVIDEVRTG YRQLFHPEQLISGKEDAANNFARGHYT+GKEIVDLCLDR+RKLADNCTGLQGFLVF                 R   +   KKSKLGF
Sbjct:    1 MREIISIHIGQAGIQVGNACWELYCLEHGINQDGTMPSDTTVGVAHDAFNTFFSETGAGKHVPRAIFVDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLER-LSVDYGKKSKLGF 169          
BLAST of EY692023 vs. ExPASy Swiss-Prot
Match: TBA_PLAYO (Tubulin alpha chain OS=Plasmodium yoelii yoelii GN=PY01155 PE=2 SV=2)

HSP 1 Score: 267.314 bits (682), Expect = 9.980e-71
Identity = 132/178 (74.16%), Postives = 141/178 (79.21%), Query Frame = 3
Query:   45 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFQCXXXXXXXXXXXXFFWRGCLLT*E------KKSKLGFQC 560
            MRE ISIH+GQAGIQVGNACWEL+CLEHGIQPDGQMP D+     DDAFNTFFSETGAGKHVPR VFVDLEPTV+DEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKE++D+CLDRIRKLADNCTGLQGFL+F                  GCL+         KKSKL F C
Sbjct:    1 MREVISIHVGQAGIQVGNACWELFCLEHGIQPDGQMPPDQAGRANDDAFNTFFSETGAGKHVPRCVFVDLEPTVVDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEVIDVCLDRIRKLADNCTGLQGFLMFSAVGGGTGSGF-------GCLMLERLSVDYGKKSKLNFCC 171          
BLAST of EY692023 vs. ExPASy Swiss-Prot
Match: TBA5_MAIZE (Tubulin alpha-5 chain OS=Zea mays GN=TUBA5 PE=2 SV=1)

HSP 1 Score: 266.159 bits (679), Expect = 2.223e-70
Identity = 132/170 (77.65%), Postives = 140/170 (82.35%), Query Frame = 3
Query:   45 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFQCXXXXXXXXXXXXFFWRGCLLT*EKKSKLGF 554
            MRE ISIHIGQAGIQVGNACWELYCLEHGI+ DG MPSD +VG   DAFNTFFSETG+GKHVPRA+FVDLEPTVIDEVRTG+YRQLFHPEQLISGKEDAANNFARGHYT+GKEIVDLCLDR+RKLADNCTGLQGFLVF                 R   +   KKSKLGF
Sbjct:    1 MREIISIHIGQAGIQVGNACWELYCLEHGIEHDGTMPSDSSVGVAHDAFNTFFSETGSGKHVPRAIFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLER-LSVDYGKKSKLGF 169          
BLAST of EY692023 vs. ExPASy Swiss-Prot
Match: TBA4A_RAT (Tubulin alpha-4A chain OS=Rattus norvegicus GN=Tuba4a PE=2 SV=1)

HSP 1 Score: 265.774 bits (678), Expect = 2.904e-70
Identity = 120/138 (86.96%), Postives = 131/138 (94.93%), Query Frame = 3
Query:   45 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVF 458
            MRECIS+H+GQAG+Q+GNACWELYCLEHGIQPDGQMPSDKT+GGGDD+F TFF ETGAGKHVPRAVFVDLEPTVIDE+R G YRQLFHPEQLI+GKEDAANN+ARGHYTIGKEI+D  LDRIRKL+D CTGLQGFLVF
Sbjct:    1 MRECISVHVGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFTTFFCETGAGKHVPRAVFVDLEPTVIDEIRNGPYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDPVLDRIRKLSDQCTGLQGFLVF 138          
BLAST of EY692023 vs. ExPASy Swiss-Prot
Match: TBA4A_MOUSE (Tubulin alpha-4A chain OS=Mus musculus GN=Tuba4a PE=1 SV=1)

HSP 1 Score: 265.774 bits (678), Expect = 2.904e-70
Identity = 120/138 (86.96%), Postives = 131/138 (94.93%), Query Frame = 3
Query:   45 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVF 458
            MRECIS+H+GQAG+Q+GNACWELYCLEHGIQPDGQMPSDKT+GGGDD+F TFF ETGAGKHVPRAVFVDLEPTVIDE+R G YRQLFHPEQLI+GKEDAANN+ARGHYTIGKEI+D  LDRIRKL+D CTGLQGFLVF
Sbjct:    1 MRECISVHVGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFTTFFCETGAGKHVPRAVFVDLEPTVIDEIRNGPYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDPVLDRIRKLSDQCTGLQGFLVF 138          
The following BLAST results are available for this feature:
BLAST of EY692023 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 407
Match NameE-valueIdentityDescription
TBA_TRYCR2.626e-7177.65Tubulin alpha chain OS=Trypanosoma cruzi PE=3 SV=1[more]
TBA6_MAIZE2.626e-7178.24Tubulin alpha-6 chain OS=Zea mays GN=TUBA6 PE=2 SV... [more]
TBA3_ELEIN2.626e-7178.24Tubulin alpha-3 chain OS=Eleusine indica GN=TUBA3 ... [more]
TBAN_PHYPO4.480e-7188.41Tubulin alpha-1B chain OS=Physarum polycephalum GN... [more]
TBAE_PHYPO4.480e-7187.68Tubulin alpha-2B chain OS=Physarum polycephalum GN... [more]
TBA1_HORVU7.641e-7178.82Tubulin alpha-1 chain OS=Hordeum vulgare GN=TUBA1 ... [more]
TBA_PLAYO9.980e-7174.16Tubulin alpha chain OS=Plasmodium yoelii yoelii GN... [more]
TBA5_MAIZE2.223e-7077.65Tubulin alpha-5 chain OS=Zea mays GN=TUBA5 PE=2 SV... [more]
TBA4A_RAT2.904e-7086.96Tubulin alpha-4A chain OS=Rattus norvegicus GN=Tub... [more]
TBA4A_MOUSE2.904e-7086.96Tubulin alpha-4A chain OS=Mus musculus GN=Tuba4a P... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-086-F08-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY692023 ID=EY692023; Name=EY692023; organism=Citrus sinensis; type=EST; length=1010bp
CAATTACTTTACGTCGTCGTTTTTTCTTCTCTTAATCTGCGAAAATGAGA
GAGTGCATTTCAATCCATATCGGTCAGGCCGGTATCCAGGTCGGAAATGC
CTGCTGGGAACTCTACTGCCTCGAGCACGGCATTCAGCCTGATGGCCAAA
TGCCAAGTGATAAGACAGTCGGAGGTGGCGACGATGCTTTCAACACCTTT
TTCAGTGAAACTGGTGCAGGGAAGCACGTGCCTCGTGCTGTCTTTGTTGA
TCTTGAGCCCACTGTCATTGATGAAGTGAGGACCGGAACTTACCGCCAGC
TCTTCCACCCTGAGCAGCTCATCAGTGGCAAGGAAGACGCTGCCAACAAC
TTCGCCCGTGGCCACTATACCATTGGTAAGGAGATTGTTGATCTCTGCCT
TGACCGCATCAGGAAGCTGGCTGATAACTGCACTGGTCTCCAGGGATTCC
TTGTTTTTCAATGCTGATTGGTGGAGGAACTGGCTCTGGTCTTGGGTCTC
TTCTTCTGGAGAGGTTGTCTGTTGACATAGGAAAAAAAATCAAAGTTGGG
CTTTCAATGTTCTAACCATCTCCTCAGGTCTCCACCTTCTGATGGTGAGC
CCTAACTCATGTGAACTCTAAACCCACACTCTGTAAGAAGATATATGACG
TTGGTTGTTCTTATTAAAAAATGAAGCTGTTCTTTAAATTCTTCTACGAT
ACTCATATGAAATATTATAAAACAAATATATATTTATACCACAGAAAATT
GTTTGCCATGAACATATCATAATTATAATTACTTAAAAAAATAGTTAACA
AGATATTTAATAAGGGAATAATAGCAAAAATAAACAAGATAATATTTGAA
ACAAAACGACAAATCTAAATAATGCAAGCTCGCTGAACTAACTGCAAAGA
AAGAGCATTCGAGAACAAAAAAAATGTGCAAAACTAAAAGAAATAATATA
AACACAAGAAGAATCTCTATATATGAAAATATTCAATAATAAAAGATTAT
AACAGTAAAA
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