EY692023

Overview
NameEY692023
Unique NameEY692023
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1010
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY692023 vs. ExPASy Swiss-Prot
Match: TBA4A_MACFA (Tubulin alpha-4A chain OS=Macaca fascicularis GN=TUBA4A PE=2 SV=1)

HSP 1 Score: 265.774 bits (678), Expect = 2.904e-70
Identity = 120/138 (86.96%), Postives = 131/138 (94.93%), Query Frame = 3
Query:   45 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVF 458
            MRECIS+H+GQAG+Q+GNACWELYCLEHGIQPDGQMPSDKT+GGGDD+F TFF ETGAGKHVPRAVFVDLEPTVIDE+R G YRQLFHPEQLI+GKEDAANN+ARGHYTIGKEI+D  LDRIRKL+D CTGLQGFLVF
Sbjct:    1 MRECISVHVGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFTTFFCETGAGKHVPRAVFVDLEPTVIDEIRNGPYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDPVLDRIRKLSDQCTGLQGFLVF 138          
BLAST of EY692023 vs. ExPASy Swiss-Prot
Match: TBA4A_HUMAN (Tubulin alpha-4A chain OS=Homo sapiens GN=TUBA4A PE=1 SV=1)

HSP 1 Score: 265.774 bits (678), Expect = 2.904e-70
Identity = 120/138 (86.96%), Postives = 131/138 (94.93%), Query Frame = 3
Query:   45 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVF 458
            MRECIS+H+GQAG+Q+GNACWELYCLEHGIQPDGQMPSDKT+GGGDD+F TFF ETGAGKHVPRAVFVDLEPTVIDE+R G YRQLFHPEQLI+GKEDAANN+ARGHYTIGKEI+D  LDRIRKL+D CTGLQGFLVF
Sbjct:    1 MRECISVHVGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFTTFFCETGAGKHVPRAVFVDLEPTVIDEIRNGPYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDPVLDRIRKLSDQCTGLQGFLVF 138          
BLAST of EY692023 vs. ExPASy Swiss-Prot
Match: TBA4A_BOVIN (Tubulin alpha-4A chain OS=Bos taurus GN=TUBA4A PE=1 SV=2)

HSP 1 Score: 265.774 bits (678), Expect = 2.904e-70
Identity = 120/138 (86.96%), Postives = 131/138 (94.93%), Query Frame = 3
Query:   45 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVF 458
            MRECIS+H+GQAG+Q+GNACWELYCLEHGIQPDGQMPSDKT+GGGDD+F TFF ETGAGKHVPRAVFVDLEPTVIDE+R G YRQLFHPEQLI+GKEDAANN+ARGHYTIGKEI+D  LDRIRKL+D CTGLQGFLVF
Sbjct:    1 MRECISVHVGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFTTFFCETGAGKHVPRAVFVDLEPTVIDEIRNGPYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDPVLDRIRKLSDQCTGLQGFLVF 138          
BLAST of EY692023 vs. ExPASy Swiss-Prot
Match: TBA_AVESA (Tubulin alpha chain OS=Avena sativa GN=TUBA PE=2 SV=1)

HSP 1 Score: 265.388 bits (677), Expect = 3.792e-70
Identity = 133/170 (78.24%), Postives = 138/170 (81.18%), Query Frame = 3
Query:   45 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFQCXXXXXXXXXXXXFFWRGCLLT*EKKSKLGF 554
            MRE ISIHIGQAGIQVGNACWELYCLEHGIQ DG MPSD TVG   DAFNTFFSETGAGKHVPRA+FVDLEPTVIDEVRTG YRQLFHPEQLISGKEDAANNFARGHYT+GKEIVDLCL R+R+LADNCTGLQGFLVF                 R   +   KKSKLGF
Sbjct:    1 MREIISIHIGQAGIQVGNACWELYCLEHGIQQDGTMPSDTTVGVAHDAFNTFFSETGAGKHVPRAIFVDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLGRVRQLADNCTGLQGFLVFNAVGGGTGSGLGSLLLER-LSVDYGKKSKLGF 169          
BLAST of EY692023 vs. ExPASy Swiss-Prot
Match: TBA_ENTDO (Tubulin alpha chain OS=Enteroctopus dofleini PE=2 SV=1)

HSP 1 Score: 263.848 bits (673), Expect = 1.103e-69
Identity = 118/138 (85.51%), Postives = 131/138 (94.93%), Query Frame = 3
Query:   45 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVF 458
            MRECISIH+GQAG+Q+GNACWELYCLEHGIQP GQMPSDK VGG DD+FNTFFSETG+GKHVPRAVFVDLEPTV+DE+RTG YRQLFHPEQLI+GKEDAANN+ARGHYTIGKE +DL LDR+RKL+D CTGLQGFL+F
Sbjct:    1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPSGQMPSDKAVGGKDDSFNTFFSETGSGKHVPRAVFVDLEPTVVDEIRTGLYRQLFHPEQLITGKEDAANNYARGHYTIGKEHIDLVLDRVRKLSDQCTGLQGFLIF 138          
BLAST of EY692023 vs. ExPASy Swiss-Prot
Match: TBA1_ARATH (Tubulin alpha-1 chain OS=Arabidopsis thaliana GN=TUBA1 PE=2 SV=1)

HSP 1 Score: 263.077 bits (671), Expect = 1.882e-69
Identity = 130/170 (76.47%), Postives = 139/170 (81.76%), Query Frame = 3
Query:   45 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFQCXXXXXXXXXXXXFFWRGCLLT*EKKSKLGF 554
            MRE ISIHIGQAGIQVGN+CWELYCLEHGIQPDG MPSD TVG   DAFNTFFSET +G+HVPRAVF+DLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYT+G+EIVD CL+R+RKLADNCTGLQGFLVF                 R   +   KKSKLGF
Sbjct:    1 MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGTMPSDSTVGACHDAFNTFFSETSSGQHVPRAVFLDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDTCLERLRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLER-LSVDFGKKSKLGF 169          
BLAST of EY692023 vs. ExPASy Swiss-Prot
Match: TBA_HAECO (Tubulin alpha chain OS=Haemonchus contortus PE=2 SV=1)

HSP 1 Score: 262.307 bits (669), Expect = 3.210e-69
Identity = 119/138 (86.23%), Postives = 133/138 (96.38%), Query Frame = 3
Query:   45 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVF 458
            MRE ISIHIGQAG+Q+GNACWELYCLEHGIQPDGQMPSDK++GG DD+F+TFFSETG+G+HVPRAV +DLEPTVIDE+RTGTYR LFHPEQLI+GKEDAANN+ARGHYTIGKEI+DL LDRIR+LADNCTGLQGFLVF
Sbjct:    1 MREVISIHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKSLGGCDDSFSTFFSETGSGRHVPRAVMIDLEPTVIDEIRTGTYRSLFHPEQLITGKEDAANNYARGHYTIGKEIIDLTLDRIRRLADNCTGLQGFLVF 138          
BLAST of EY692023 vs. ExPASy Swiss-Prot
Match: TBA5_CHICK (Tubulin alpha-5 chain OS=Gallus gallus PE=3 SV=1)

HSP 1 Score: 262.307 bits (669), Expect = 3.210e-69
Identity = 118/138 (85.51%), Postives = 128/138 (92.75%), Query Frame = 3
Query:   45 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVF 458
            MRECIS+H+GQAG+Q+GN CWELYCLEHGIQPDGQMPSDKT+GGGDD+F TFF ETGAGKHVPRA+FVDLEPTVIDEVR G YRQLFHPEQLI+GKED ANN+ARGHYTIGKEI+D  LDRIRKLAD CTGLQGFL F
Sbjct:    1 MRECISVHVGQAGVQMGNTCWELYCLEHGIQPDGQMPSDKTIGGGDDSFTTFFCETGAGKHVPRAIFVDLEPTVIDEVRAGIYRQLFHPEQLITGKEDGANNYARGHYTIGKEIIDQVLDRIRKLADQCTGLQGFLCF 138          
BLAST of EY692023 vs. ExPASy Swiss-Prot
Match: TBA2_HOMAM (Tubulin alpha-2 chain OS=Homarus americanus PE=2 SV=1)

HSP 1 Score: 260.381 bits (664), Expect = 1.220e-68
Identity = 119/139 (85.61%), Postives = 133/139 (95.68%), Query Frame = 3
Query:   45 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFQ 461
            MRECISIH+GQAG+Q+GN+CWELYCLEHGIQPDGQMPSDKTVG  +D+FNTFF+ETG+GKHVPRAVFVDLEP+VIDEVR+G YRQLFHPEQLISGKEDAANN+ARGHYTIGKE VD+ LDRIRKLAD CTGLQGFL+F+
Sbjct:    1 MRECISIHVGQAGVQMGNSCWELYCLEHGIQPDGQMPSDKTVGVCNDSFNTFFTETGSGKHVPRAVFVDLEPSVIDEVRSGIYRQLFHPEQLISGKEDAANNYARGHYTIGKEYVDIVLDRIRKLADQCTGLQGFLIFR 139          
BLAST of EY692023 vs. ExPASy Swiss-Prot
Match: TBA1_HOMAM (Tubulin alpha-1 chain OS=Homarus americanus PE=2 SV=1)

HSP 1 Score: 259.61 bits (662), Expect = 2.081e-68
Identity = 119/138 (86.23%), Postives = 131/138 (94.93%), Query Frame = 3
Query:   45 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVF 458
            MRECISIH+GQAG+Q+GNA WELYCLEHGIQPD +MPSDKTVG  DD+FNTFFSETGAGKHVPRAVFVDLEP+V+DEVR+G YRQLFHPEQLI+GKEDAANN+ARGHYTIGKEIVD+ LDRIRKLAD CTGLQGFL+F
Sbjct:    1 MRECISIHVGQAGVQMGNAVWELYCLEHGIQPDAKMPSDKTVGVSDDSFNTFFSETGAGKHVPRAVFVDLEPSVVDEVRSGVYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDIVLDRIRKLADQCTGLQGFLIF 138          
The following BLAST results are available for this feature:
BLAST of EY692023 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 407
Match NameE-valueIdentityDescription
TBA4A_MACFA2.904e-7086.96Tubulin alpha-4A chain OS=Macaca fascicularis GN=T... [more]
TBA4A_HUMAN2.904e-7086.96Tubulin alpha-4A chain OS=Homo sapiens GN=TUBA4A P... [more]
TBA4A_BOVIN2.904e-7086.96Tubulin alpha-4A chain OS=Bos taurus GN=TUBA4A PE=... [more]
TBA_AVESA3.792e-7078.24Tubulin alpha chain OS=Avena sativa GN=TUBA PE=2 S... [more]
TBA_ENTDO1.103e-6985.51Tubulin alpha chain OS=Enteroctopus dofleini PE=2 ... [more]
TBA1_ARATH1.882e-6976.47Tubulin alpha-1 chain OS=Arabidopsis thaliana GN=T... [more]
TBA_HAECO3.210e-6986.23Tubulin alpha chain OS=Haemonchus contortus PE=2 S... [more]
TBA5_CHICK3.210e-6985.51Tubulin alpha-5 chain OS=Gallus gallus PE=3 SV=1[more]
TBA2_HOMAM1.220e-6885.61Tubulin alpha-2 chain OS=Homarus americanus PE=2 S... [more]
TBA1_HOMAM2.081e-6886.23Tubulin alpha-1 chain OS=Homarus americanus PE=2 S... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-086-F08-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY692023 ID=EY692023; Name=EY692023; organism=Citrus sinensis; type=EST; length=1010bp
CAATTACTTTACGTCGTCGTTTTTTCTTCTCTTAATCTGCGAAAATGAGA
GAGTGCATTTCAATCCATATCGGTCAGGCCGGTATCCAGGTCGGAAATGC
CTGCTGGGAACTCTACTGCCTCGAGCACGGCATTCAGCCTGATGGCCAAA
TGCCAAGTGATAAGACAGTCGGAGGTGGCGACGATGCTTTCAACACCTTT
TTCAGTGAAACTGGTGCAGGGAAGCACGTGCCTCGTGCTGTCTTTGTTGA
TCTTGAGCCCACTGTCATTGATGAAGTGAGGACCGGAACTTACCGCCAGC
TCTTCCACCCTGAGCAGCTCATCAGTGGCAAGGAAGACGCTGCCAACAAC
TTCGCCCGTGGCCACTATACCATTGGTAAGGAGATTGTTGATCTCTGCCT
TGACCGCATCAGGAAGCTGGCTGATAACTGCACTGGTCTCCAGGGATTCC
TTGTTTTTCAATGCTGATTGGTGGAGGAACTGGCTCTGGTCTTGGGTCTC
TTCTTCTGGAGAGGTTGTCTGTTGACATAGGAAAAAAAATCAAAGTTGGG
CTTTCAATGTTCTAACCATCTCCTCAGGTCTCCACCTTCTGATGGTGAGC
CCTAACTCATGTGAACTCTAAACCCACACTCTGTAAGAAGATATATGACG
TTGGTTGTTCTTATTAAAAAATGAAGCTGTTCTTTAAATTCTTCTACGAT
ACTCATATGAAATATTATAAAACAAATATATATTTATACCACAGAAAATT
GTTTGCCATGAACATATCATAATTATAATTACTTAAAAAAATAGTTAACA
AGATATTTAATAAGGGAATAATAGCAAAAATAAACAAGATAATATTTGAA
ACAAAACGACAAATCTAAATAATGCAAGCTCGCTGAACTAACTGCAAAGA
AAGAGCATTCGAGAACAAAAAAAATGTGCAAAACTAAAAGAAATAATATA
AACACAAGAAGAATCTCTATATATGAAAATATTCAATAATAAAAGATTAT
AACAGTAAAA
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