EY692002

Overview
NameEY692002
Unique NameEY692002
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1040
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY692002 vs. ExPASy Swiss-Prot
Match: UB2D4_HUMAN (Ubiquitin-conjugating enzyme E2 D4 OS=Homo sapiens GN=UBE2D4 PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 3.606e-23
Identity = 50/97 (51.55%), Postives = 64/97 (65.98%), Query Frame = 2
Query:  155 MASKRILKELKDLQKDPPTSCSAGPAAEDMFHWQATVMGPSDNPYADMQVYXXXXXXXXXXXXXXXQRLLLGPKVFHPNIDSNGSICLDILKEQWNP 445
            MA KRI KEL DLQ+DPP  CSAGP  +D+FHWQAT+MGP+D+PY     +                ++    K++HPNI+SNGSICLDIL+ QW+P
Sbjct:    1 MALKRIQKELTDLQRDPPAQCSAGPVGDDLFHWQATIMGPNDSPYQGGVFF--LTIHFPTDYPFKPPKVAFTTKIYHPNINSNGSICLDILRSQWSP 95          
BLAST of EY692002 vs. ExPASy Swiss-Prot
Match: UBC4_SCHPO (Ubiquitin-conjugating enzyme E2 4 OS=Schizosaccharomyces pombe GN=ubc4 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 4.709e-23
Identity = 50/97 (51.55%), Postives = 67/97 (69.07%), Query Frame = 2
Query:  155 MASKRILKELKDLQKDPPTSCSAGPAAEDMFHWQATVMGPSDNPYADMQVYXXXXXXXXXXXXXXXQRLLLGPKVFHPNIDSNGSICLDILKEQWNP 445
            MA KRI +EL DL KDPP+SCSAGP  +D+FHWQAT+MGP+D+PYA    +                ++    +++HPNI+SNGSICLDIL++QW+P
Sbjct:    1 MALKRINRELADLGKDPPSSCSAGPVGDDLFHWQATIMGPADSPYAGGVFF--LSIHFPTDYPFKPPKVNFTTRIYHPNINSNGSICLDILRDQWSP 95          
BLAST of EY692002 vs. ExPASy Swiss-Prot
Match: UBC4_CANAL (Ubiquitin-conjugating enzyme E2 4 OS=Candida albicans GN=UBC4 PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 6.150e-23
Identity = 49/97 (50.52%), Postives = 67/97 (69.07%), Query Frame = 2
Query:  155 MASKRILKELKDLQKDPPTSCSAGPAAEDMFHWQATVMGPSDNPYADMQVYXXXXXXXXXXXXXXXQRLLLGPKVFHPNIDSNGSICLDILKEQWNP 445
            M+ KRI KEL DL +DPP+SCSAGP  +D++HWQA++MGP D+PYA    +                ++ L  K++HPNI+SNG+ICLDILK+QW+P
Sbjct:    1 MSLKRINKELSDLGRDPPSSCSAGPVGDDLYHWQASIMGPPDSPYAGGVFF--LSIHFPTDYPLKPPKIALTTKIYHPNINSNGNICLDILKDQWSP 95          
BLAST of EY692002 vs. ExPASy Swiss-Prot
Match: UBC1_COLGL (Ubiquitin-conjugating enzyme E2-16 kDa OS=Colletotrichum gloeosporioides GN=UBC1 PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 6.150e-23
Identity = 50/97 (51.55%), Postives = 66/97 (68.04%), Query Frame = 2
Query:  155 MASKRILKELKDLQKDPPTSCSAGPAAEDMFHWQATVMGPSDNPYADMQVYXXXXXXXXXXXXXXXQRLLLGPKVFHPNIDSNGSICLDILKEQWNP 445
            MA KRI KEL DL +DPP+SCSAGP  ED+FHWQAT+MGP D+PY+    +                ++    +++HPNI+SNGSICLDIL++QW+P
Sbjct:    1 MAFKRINKELTDLGRDPPSSCSAGPVGEDLFHWQATIMGPGDSPYSGGVFF--LAIHFPTDYPFKPPKVNFTTRIYHPNINSNGSICLDILRDQWSP 95          
BLAST of EY692002 vs. ExPASy Swiss-Prot
Match: UBC12_ARATH (Probable ubiquitin-conjugating enzyme E2 12 OS=Arabidopsis thaliana GN=UBC12 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 1.370e-22
Identity = 53/98 (54.08%), Postives = 66/98 (67.35%), Query Frame = 2
Query:  155 MASKRILKELKDLQKDPPTSCSAGPAAE-DMFHWQATVMGPSDNPYADMQVYXXXXXXXXXXXXXXXQRLLLGPKVFHPNIDSNGSICLDILKEQWNP 445
            MASKRI +EL+D+Q+ PP +CSAGP AE D+FHWQAT+MGP D+PY+                     ++    KV+HPNIDS GSICLDILKEQW+P
Sbjct:    1 MASKRISRELRDMQRHPPANCSAGPVAEEDIFHWQATIMGPHDSPYSGG--VFTVSIDFSSDYPFKPPKVNFKTKVYHPNIDSKGSICLDILKEQWSP 96          
BLAST of EY692002 vs. ExPASy Swiss-Prot
Match: UB2D3_RAT (Ubiquitin-conjugating enzyme E2 D3 OS=Rattus norvegicus GN=Ube2d3 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.789e-22
Identity = 49/97 (50.52%), Postives = 63/97 (64.95%), Query Frame = 2
Query:  155 MASKRILKELKDLQKDPPTSCSAGPAAEDMFHWQATVMGPSDNPYADMQVYXXXXXXXXXXXXXXXQRLLLGPKVFHPNIDSNGSICLDILKEQWNP 445
            MA KRI KEL DL +DPP  CSAGP  +DMFHWQAT+MGP+D+PY     +                ++    +++HPNI+SNGSICLDIL+ QW+P
Sbjct:    1 MALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFF--LTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSP 95          
BLAST of EY692002 vs. ExPASy Swiss-Prot
Match: UB2D3_PONAB (Ubiquitin-conjugating enzyme E2 D3 OS=Pongo abelii GN=UBE2D3 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.789e-22
Identity = 49/97 (50.52%), Postives = 63/97 (64.95%), Query Frame = 2
Query:  155 MASKRILKELKDLQKDPPTSCSAGPAAEDMFHWQATVMGPSDNPYADMQVYXXXXXXXXXXXXXXXQRLLLGPKVFHPNIDSNGSICLDILKEQWNP 445
            MA KRI KEL DL +DPP  CSAGP  +DMFHWQAT+MGP+D+PY     +                ++    +++HPNI+SNGSICLDIL+ QW+P
Sbjct:    1 MALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFF--LTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSP 95          
BLAST of EY692002 vs. ExPASy Swiss-Prot
Match: UB2D3_MOUSE (Ubiquitin-conjugating enzyme E2 D3 OS=Mus musculus GN=Ube2d3 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.789e-22
Identity = 49/97 (50.52%), Postives = 63/97 (64.95%), Query Frame = 2
Query:  155 MASKRILKELKDLQKDPPTSCSAGPAAEDMFHWQATVMGPSDNPYADMQVYXXXXXXXXXXXXXXXQRLLLGPKVFHPNIDSNGSICLDILKEQWNP 445
            MA KRI KEL DL +DPP  CSAGP  +DMFHWQAT+MGP+D+PY     +                ++    +++HPNI+SNGSICLDIL+ QW+P
Sbjct:    1 MALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFF--LTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSP 95          
BLAST of EY692002 vs. ExPASy Swiss-Prot
Match: UB2D3_MACFA (Ubiquitin-conjugating enzyme E2 D3 OS=Macaca fascicularis GN=UBE2D3 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.789e-22
Identity = 49/97 (50.52%), Postives = 63/97 (64.95%), Query Frame = 2
Query:  155 MASKRILKELKDLQKDPPTSCSAGPAAEDMFHWQATVMGPSDNPYADMQVYXXXXXXXXXXXXXXXQRLLLGPKVFHPNIDSNGSICLDILKEQWNP 445
            MA KRI KEL DL +DPP  CSAGP  +DMFHWQAT+MGP+D+PY     +                ++    +++HPNI+SNGSICLDIL+ QW+P
Sbjct:    1 MALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFF--LTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSP 95          
BLAST of EY692002 vs. ExPASy Swiss-Prot
Match: UB2D3_HUMAN (Ubiquitin-conjugating enzyme E2 D3 OS=Homo sapiens GN=UBE2D3 PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.789e-22
Identity = 49/97 (50.52%), Postives = 63/97 (64.95%), Query Frame = 2
Query:  155 MASKRILKELKDLQKDPPTSCSAGPAAEDMFHWQATVMGPSDNPYADMQVYXXXXXXXXXXXXXXXQRLLLGPKVFHPNIDSNGSICLDILKEQWNP 445
            MA KRI KEL DL +DPP  CSAGP  +DMFHWQAT+MGP+D+PY     +                ++    +++HPNI+SNGSICLDIL+ QW+P
Sbjct:    1 MALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFF--LTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSP 95          
The following BLAST results are available for this feature:
BLAST of EY692002 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
UB2D4_HUMAN3.606e-2351.55Ubiquitin-conjugating enzyme E2 D4 OS=Homo sapiens... [more]
UBC4_SCHPO4.709e-2351.55Ubiquitin-conjugating enzyme E2 4 OS=Schizosacchar... [more]
UBC4_CANAL6.150e-2350.52Ubiquitin-conjugating enzyme E2 4 OS=Candida albic... [more]
UBC1_COLGL6.150e-2351.55Ubiquitin-conjugating enzyme E2-16 kDa OS=Colletot... [more]
UBC12_ARATH1.370e-2254.08Probable ubiquitin-conjugating enzyme E2 12 OS=Ara... [more]
UB2D3_RAT1.789e-2250.52Ubiquitin-conjugating enzyme E2 D3 OS=Rattus norve... [more]
UB2D3_PONAB1.789e-2250.52Ubiquitin-conjugating enzyme E2 D3 OS=Pongo abelii... [more]
UB2D3_MOUSE1.789e-2250.52Ubiquitin-conjugating enzyme E2 D3 OS=Mus musculus... [more]
UB2D3_MACFA1.789e-2250.52Ubiquitin-conjugating enzyme E2 D3 OS=Macaca fasci... [more]
UB2D3_HUMAN1.789e-2250.52Ubiquitin-conjugating enzyme E2 D3 OS=Homo sapiens... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-086-D03-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY692002 ID=EY692002; Name=EY692002; organism=Citrus sinensis; type=EST; length=1040bp
GTTCACGAAGGAAGCGAGGCGTGGGGCGGCTTGACGACGTAGATCTGCTT
CACCGTTTCGCTTTCTCGACGCTATTACCCTACGATCCTGTTCTCTGCCG
CGCAAGGTCTTAAGGTTCGTTGTAGCTTTAATTTTAATAACCCCTTGAAG
AGTCATGGCTTCAAAGCGTATTTTGAAGGAACTCAAGGATCTGCAAAAGG
ATCCTCCCACATCTTGCAGCGCTGGCCCTGCGGCTGAAGACATGTTCCAC
TGGCAAGCCACAGTTATGGGCCCTTCTGATAACCCATATGCTGATATGCA
GGTGTATTTTTAGTTGCCATTAATTTTCCTCCTGATTATCCTTTCAAGCC
CCCAAAGGTTGCTTTTAGGACCAAAGGTCTTCCACCCGAACATCGACAGC
AATGGAAGCATCTGTCTTGATATCCTTAAAGAACAGTGGAATCCCTGCGC
TTAACCTTTCAAAGATGGTGAAATTGTAACACGAATGCACGATATAATGC
GGAAGAATGATTGGATGATGAATACATTTAAAGGTGAATATGGGACTTCC
ACACAACCTAACTTCACCCCTGACATTAGATAGAAGCCTTATAAACAAAA
AAGAATAAAAATACTAAAAAAATAGATAAACATTTTCTAAAAAAAAAACA
CTGTAAAAACAGAAAAAATATAAGTAAAGGCACTCGAGAGAAACTCATAC
GGATTATACATCTACACTTATACTCGCCATGACACTCCATGCAGGAGATA
ACAACCAGTCTTGACGCATTAAAATAAAAAATAATTTAATATCATGATTA
CATATAGAGGACATAAATTGCTGTTTAACATTCGAGAAGACCAACCAACA
TAATGTCGATATTAAATATTTATATAAACAAATATAACAAAAAAAAAACA
GTTGATATACGAAGAGTGGCAATAAACGAATAGTCCATAAAACCTTGGAA
ACTAAAATTAATAGTATGACATCGTTCAACACGACGATATAATTTGTATT
TTGTAAGTAATTGCGAATGTTAATACGAATGTTGTGTTAT
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