EY692002

Overview
NameEY692002
Unique NameEY692002
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1040
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY692002 vs. ExPASy Swiss-Prot
Match: UB2D1_HUMAN (Ubiquitin-conjugating enzyme E2 D1 OS=Homo sapiens GN=UBE2D1 PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 3.986e-22
Identity = 49/97 (50.52%), Postives = 62/97 (63.92%), Query Frame = 2
Query:  155 MASKRILKELKDLQKDPPTSCSAGPAAEDMFHWQATVMGPSDNPYADMQVYXXXXXXXXXXXXXXXQRLLLGPKVFHPNIDSNGSICLDILKEQWNP 445
            MA KRI KEL DLQ+DPP  CSAGP  +D+FHWQAT+MGP D+ Y     +                ++    K++HPNI+SNGSICLDIL+ QW+P
Sbjct:    1 MALKRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFF--LTVHFPTDYPFKPPKIAFTTKIYHPNINSNGSICLDILRSQWSP 95          
BLAST of EY692002 vs. ExPASy Swiss-Prot
Match: UB2D1_BOVIN (Ubiquitin-conjugating enzyme E2 D1 OS=Bos taurus GN=UBE2D1 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 3.986e-22
Identity = 49/97 (50.52%), Postives = 62/97 (63.92%), Query Frame = 2
Query:  155 MASKRILKELKDLQKDPPTSCSAGPAAEDMFHWQATVMGPSDNPYADMQVYXXXXXXXXXXXXXXXQRLLLGPKVFHPNIDSNGSICLDILKEQWNP 445
            MA KRI KEL DLQ+DPP  CSAGP  +D+FHWQAT+MGP D+ Y     +                ++    K++HPNI+SNGSICLDIL+ QW+P
Sbjct:    1 MALKRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFF--LTVHFPTDYPFKPPKIAFTTKIYHPNINSNGSICLDILRSQWSP 95          
BLAST of EY692002 vs. ExPASy Swiss-Prot
Match: UBCD1_DROME (Ubiquitin-conjugating enzyme E2-17 kDa OS=Drosophila melanogaster GN=eff PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 6.800e-22
Identity = 48/97 (49.48%), Postives = 63/97 (64.95%), Query Frame = 2
Query:  155 MASKRILKELKDLQKDPPTSCSAGPAAEDMFHWQATVMGPSDNPYADMQVYXXXXXXXXXXXXXXXQRLLLGPKVFHPNIDSNGSICLDILKEQWNP 445
            MA KRI KEL+DL +DPP  CSAGP  +D+FHWQAT+MGP D+PY     +                ++    +++HPNI+SNGSICLDIL+ QW+P
Sbjct:    1 MALKRINKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFF--LTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSP 95          
BLAST of EY692002 vs. ExPASy Swiss-Prot
Match: UB2D3_BOVIN (Ubiquitin-conjugating enzyme E2 D3 OS=Bos taurus GN=UBE2D3 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 1.160e-21
Identity = 48/97 (49.48%), Postives = 62/97 (63.92%), Query Frame = 2
Query:  155 MASKRILKELKDLQKDPPTSCSAGPAAEDMFHWQATVMGPSDNPYADMQVYXXXXXXXXXXXXXXXQRLLLGPKVFHPNIDSNGSICLDILKEQWNP 445
            MA KRI KEL DL +DPP  CSAGP  +DMFHWQAT+MGP+D+PY     +                ++    +++HPNI+SN SICLDIL+ QW+P
Sbjct:    1 MALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFF--LTIHFPTDYPFKPPKVAFTTRIYHPNINSNDSICLDILRSQWSP 95          
BLAST of EY692002 vs. ExPASy Swiss-Prot
Match: UBC2_CAEEL (Ubiquitin-conjugating enzyme E2 2 OS=Caenorhabditis elegans GN=let-70 PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.515e-21
Identity = 47/97 (48.45%), Postives = 63/97 (64.95%), Query Frame = 2
Query:  155 MASKRILKELKDLQKDPPTSCSAGPAAEDMFHWQATVMGPSDNPYADMQVYXXXXXXXXXXXXXXXQRLLLGPKVFHPNIDSNGSICLDILKEQWNP 445
            MA KRI KEL+DL +DPP  CSAGP  +D+FHWQAT+MGP ++PY     +                ++    +++HPNI+SNGSICLDIL+ QW+P
Sbjct:    1 MALKRIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFF--LTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSP 95          
BLAST of EY692002 vs. ExPASy Swiss-Prot
Match: UB2E1_MOUSE (Ubiquitin-conjugating enzyme E2 E1 OS=Mus musculus GN=Ube2e1 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 5.770e-13
Identity = 34/96 (35.42%), Postives = 56/96 (58.33%), Query Frame = 2
Query:  158 ASKRILKELKDLQKDPPTSCSAGPAAEDMFHWQATVMGPSDNPYADMQVYXXXXXXXXXXXXXXXQRLLLGPKVFHPNIDSNGSICLDILKEQWNP 445
            ++KRI KEL D+  DPP +CSAGP  ++++ W++T++GP  + Y     +                ++    +++H NI+S G ICLDILK+ W+P
Sbjct:   48 SAKRIQKELADITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFF--LDITFTPEYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSP 141          
BLAST of EY692002 vs. ExPASy Swiss-Prot
Match: UB2E1_HUMAN (Ubiquitin-conjugating enzyme E2 E1 OS=Homo sapiens GN=UBE2E1 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 5.770e-13
Identity = 34/96 (35.42%), Postives = 56/96 (58.33%), Query Frame = 2
Query:  158 ASKRILKELKDLQKDPPTSCSAGPAAEDMFHWQATVMGPSDNPYADMQVYXXXXXXXXXXXXXXXQRLLLGPKVFHPNIDSNGSICLDILKEQWNP 445
            ++KRI KEL D+  DPP +CSAGP  ++++ W++T++GP  + Y     +                ++    +++H NI+S G ICLDILK+ W+P
Sbjct:   48 SAKRIQKELADITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFF--LDITFTPEYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSP 141          
BLAST of EY692002 vs. ExPASy Swiss-Prot
Match: UBC3_ARATH (Ubiquitin-conjugating enzyme E2 3 OS=Arabidopsis thaliana GN=UBC3 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.679e-12
Identity = 36/96 (37.50%), Postives = 50/96 (52.08%), Query Frame = 2
Query:  158 ASKRILKELKDLQKDPPTSCSAGPAAEDMFHWQATVMGPSDNPYADMQVYXXXXXXXXXXXXXXXQRLLLGPKVFHPNIDSNGSICLDILKEQWNP 445
            A KR++ + K LQKDPP   S  P   ++ HW A + GP D P+                      R +   ++FHPNI ++GSICLDIL+ QW+P
Sbjct:    5 AKKRLMWDFKRLQKDPPVGISGAPQDNNIMHWNALIFGPEDTPWDGGTFKLTLHFTEDYPNKPPIVRFV--SRMFHPNIYADGSICLDILQNQWSP 98          
BLAST of EY692002 vs. ExPASy Swiss-Prot
Match: UB2E3_MOUSE (Ubiquitin-conjugating enzyme E2 E3 OS=Mus musculus GN=Ube2e3 PE=1 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 1.679e-12
Identity = 33/96 (34.38%), Postives = 56/96 (58.33%), Query Frame = 2
Query:  158 ASKRILKELKDLQKDPPTSCSAGPAAEDMFHWQATVMGPSDNPYADMQVYXXXXXXXXXXXXXXXQRLLLGPKVFHPNIDSNGSICLDILKEQWNP 445
            ++KRI KEL ++  DPP +CSAGP  ++++ W++T++GP  + Y     +                ++    +++H NI+S G ICLDILK+ W+P
Sbjct:   62 SAKRIQKELAEITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFF--LDITFSSDYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSP 155          
BLAST of EY692002 vs. ExPASy Swiss-Prot
Match: UB2E3_HUMAN (Ubiquitin-conjugating enzyme E2 E3 OS=Homo sapiens GN=UBE2E3 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.679e-12
Identity = 33/96 (34.38%), Postives = 56/96 (58.33%), Query Frame = 2
Query:  158 ASKRILKELKDLQKDPPTSCSAGPAAEDMFHWQATVMGPSDNPYADMQVYXXXXXXXXXXXXXXXQRLLLGPKVFHPNIDSNGSICLDILKEQWNP 445
            ++KRI KEL ++  DPP +CSAGP  ++++ W++T++GP  + Y     +                ++    +++H NI+S G ICLDILK+ W+P
Sbjct:   62 SAKRIQKELAEITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFF--LDITFSSDYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSP 155          
The following BLAST results are available for this feature:
BLAST of EY692002 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
UB2D1_HUMAN3.986e-2250.52Ubiquitin-conjugating enzyme E2 D1 OS=Homo sapiens... [more]
UB2D1_BOVIN3.986e-2250.52Ubiquitin-conjugating enzyme E2 D1 OS=Bos taurus G... [more]
UBCD1_DROME6.800e-2249.48Ubiquitin-conjugating enzyme E2-17 kDa OS=Drosophi... [more]
UB2D3_BOVIN1.160e-2149.48Ubiquitin-conjugating enzyme E2 D3 OS=Bos taurus G... [more]
UBC2_CAEEL1.515e-2148.45Ubiquitin-conjugating enzyme E2 2 OS=Caenorhabditi... [more]
UB2E1_MOUSE5.770e-1335.42Ubiquitin-conjugating enzyme E2 E1 OS=Mus musculus... [more]
UB2E1_HUMAN5.770e-1335.42Ubiquitin-conjugating enzyme E2 E1 OS=Homo sapiens... [more]
UBC3_ARATH1.679e-1237.50Ubiquitin-conjugating enzyme E2 3 OS=Arabidopsis t... [more]
UB2E3_MOUSE1.679e-1234.38Ubiquitin-conjugating enzyme E2 E3 OS=Mus musculus... [more]
UB2E3_HUMAN1.679e-1234.38Ubiquitin-conjugating enzyme E2 E3 OS=Homo sapiens... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-086-D03-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY692002 ID=EY692002; Name=EY692002; organism=Citrus sinensis; type=EST; length=1040bp
GTTCACGAAGGAAGCGAGGCGTGGGGCGGCTTGACGACGTAGATCTGCTT
CACCGTTTCGCTTTCTCGACGCTATTACCCTACGATCCTGTTCTCTGCCG
CGCAAGGTCTTAAGGTTCGTTGTAGCTTTAATTTTAATAACCCCTTGAAG
AGTCATGGCTTCAAAGCGTATTTTGAAGGAACTCAAGGATCTGCAAAAGG
ATCCTCCCACATCTTGCAGCGCTGGCCCTGCGGCTGAAGACATGTTCCAC
TGGCAAGCCACAGTTATGGGCCCTTCTGATAACCCATATGCTGATATGCA
GGTGTATTTTTAGTTGCCATTAATTTTCCTCCTGATTATCCTTTCAAGCC
CCCAAAGGTTGCTTTTAGGACCAAAGGTCTTCCACCCGAACATCGACAGC
AATGGAAGCATCTGTCTTGATATCCTTAAAGAACAGTGGAATCCCTGCGC
TTAACCTTTCAAAGATGGTGAAATTGTAACACGAATGCACGATATAATGC
GGAAGAATGATTGGATGATGAATACATTTAAAGGTGAATATGGGACTTCC
ACACAACCTAACTTCACCCCTGACATTAGATAGAAGCCTTATAAACAAAA
AAGAATAAAAATACTAAAAAAATAGATAAACATTTTCTAAAAAAAAAACA
CTGTAAAAACAGAAAAAATATAAGTAAAGGCACTCGAGAGAAACTCATAC
GGATTATACATCTACACTTATACTCGCCATGACACTCCATGCAGGAGATA
ACAACCAGTCTTGACGCATTAAAATAAAAAATAATTTAATATCATGATTA
CATATAGAGGACATAAATTGCTGTTTAACATTCGAGAAGACCAACCAACA
TAATGTCGATATTAAATATTTATATAAACAAATATAACAAAAAAAAAACA
GTTGATATACGAAGAGTGGCAATAAACGAATAGTCCATAAAACCTTGGAA
ACTAAAATTAATAGTATGACATCGTTCAACACGACGATATAATTTGTATT
TTGTAAGTAATTGCGAATGTTAATACGAATGTTGTGTTAT
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