EY691978

Overview
NameEY691978
Unique NameEY691978
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length970
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY691978 vs. ExPASy Swiss-Prot
Match: UCRI_LAGLA (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Lagothrix lagotricha GN=UQCRFS1 PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.664e-35
Identity = 67/149 (44.97%), Postives = 98/149 (65.77%), Query Frame = 3
Query:    9 SKRAFAYFILTGGRFVYASLIRLLILKFVLSMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTEEDIQLANSVDVASLRDTQEDSVRVKNPEWLVVVGVCTHLGCIPCKNGGDFGGWINPCHG*HDDISEWIHIGTSPSN 455
            +++ F+Y +            + ++ +FV SMSAS DVLA++ +E+ LS I  G  +  KWRGKP+F+R RT+++I+   +V+++ LRD Q D  RVK PEW++++GVCTHLGC+P  N GDFGG+  PCHG H D S  I  G +P N
Sbjct:  109 ARKGFSYLVTAATAVGVTYAAKSIVTQFVSSMSASADVLAMSKIEIKLSDIPEGKNMAFKWRGKPLFVRHRTQKEIEQEAAVELSQLRDPQHDLDRVKKPEWMILIGVCTHLGCVPIANAGDFGGYYCPCHGSHYDASGRIRKGPAPLN 257          
BLAST of EY691978 vs. ExPASy Swiss-Prot
Match: UCRI_BOVIN (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Bos taurus GN=UQCRFS1 PE=1 SV=3)

HSP 1 Score: 149.828 bits (377), Expect = 2.174e-35
Identity = 69/149 (46.31%), Postives = 98/149 (65.77%), Query Frame = 3
Query:    9 SKRAFAYFILTGGRFVYASLIRLLILKFVLSMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTEEDIQLANSVDVASLRDTQEDSVRVKNPEWLVVVGVCTHLGCIPCKNGGDFGGWINPCHG*HDDISEWIHIGTSPSN 455
            +++ F+Y +        A   + ++ +FV SMSAS DVLA++ +E+ LS I  G  +  KWRGKP+F+R RT+++I    +V+V+ LRD Q D  RVK PEW++++GVCTHLGC+P  N GDFGG+  PCHG H D S  I  G +P N
Sbjct:  109 ARKGFSYLVTATTTVGVAYAAKNVVSQFVSSMSASADVLAMSKIEIKLSDIPEGKNMAFKWRGKPLFVRHRTKKEIDQEAAVEVSQLRDPQHDLERVKKPEWVILIGVCTHLGCVPIANAGDFGGYYCPCHGSHYDASGRIRKGPAPLN 257          
BLAST of EY691978 vs. ExPASy Swiss-Prot
Match: UCRI_MOUSE (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Mus musculus GN=Uqcrfs1 PE=1 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 2.839e-35
Identity = 69/149 (46.31%), Postives = 98/149 (65.77%), Query Frame = 3
Query:    9 SKRAFAYFILTGGRFVYASLIRLLILKFVLSMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTEEDIQLANSVDVASLRDTQEDSVRVKNPEWLVVVGVCTHLGCIPCKNGGDFGGWINPCHG*HDDISEWIHIGTSPSN 455
            +++ F+Y +        A   + ++ +FV SMSAS DVLA++ +E+ LS I  G  +  KWRGKP+F+R RT+++I    +V+V+ LRD Q D  RVK PEW++++GVCTHLGC+P  N GDFGG+  PCHG H D S  I  G +P N
Sbjct:  109 ARKGFSYLVTATTTVGVAYAAKNVVSQFVSSMSASADVLAMSKIEIKLSDIPEGKNMAFKWRGKPLFVRHRTKKEIDQEAAVEVSQLRDPQHDLDRVKKPEWVILIGVCTHLGCVPIANAGDFGGYYCPCHGSHYDASGRIRKGPAPLN 257          
BLAST of EY691978 vs. ExPASy Swiss-Prot
Match: UCRI_AOTAZ (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Aotus azarai GN=UQCRFS1 PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 2.839e-35
Identity = 67/149 (44.97%), Postives = 98/149 (65.77%), Query Frame = 3
Query:    9 SKRAFAYFILTGGRFVYASLIRLLILKFVLSMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTEEDIQLANSVDVASLRDTQEDSVRVKNPEWLVVVGVCTHLGCIPCKNGGDFGGWINPCHG*HDDISEWIHIGTSPSN 455
            +++ F+Y +            + ++ +FV SMSAS DVLA++ +E+ LS I  G  +  KWRGKP+F+R RT+++I+   +V+++ LRD Q D  RVK PEW++++GVCTHLGC+P  N GDFGG+  PCHG H D S  I  G +P N
Sbjct:  109 ARKGFSYLVTATTAVGVTYAAKSIVTQFVSSMSASADVLAMSKIEIKLSDIPEGKNMAFKWRGKPLFVRHRTQKEIEQEAAVELSQLRDPQHDLDRVKKPEWMILIGVCTHLGCVPIANAGDFGGYYCPCHGSHYDASGRIRKGPAPLN 257          
BLAST of EY691978 vs. ExPASy Swiss-Prot
Match: UCRI_SAISC (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Saimiri sciureus GN=UQCRFS1 PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 3.708e-35
Identity = 66/149 (44.30%), Postives = 98/149 (65.77%), Query Frame = 3
Query:    9 SKRAFAYFILTGGRFVYASLIRLLILKFVLSMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTEEDIQLANSVDVASLRDTQEDSVRVKNPEWLVVVGVCTHLGCIPCKNGGDFGGWINPCHG*HDDISEWIHIGTSPSN 455
            +++ F+Y +            + ++ +F+ SMSAS DVLA++ +E+ LS I  G  +  KWRGKP+F+R RT+++I+   +V+++ LRD Q D  RVK PEW++++GVCTHLGC+P  N GDFGG+  PCHG H D S  I  G +P N
Sbjct:  109 ARKVFSYMVTATTAVGVTYAAKSIVTQFISSMSASADVLAMSKIEIKLSDIPEGKNMAFKWRGKPLFVRHRTQKEIEQEAAVELSQLRDPQHDLDRVKKPEWMILIGVCTHLGCVPIANAGDFGGYYCPCHGSHYDASGRIRKGPAPLN 257          
BLAST of EY691978 vs. ExPASy Swiss-Prot
Match: UCRI_RAT (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Rattus norvegicus GN=Uqcrfs1 PE=1 SV=2)

HSP 1 Score: 149.058 bits (375), Expect = 3.708e-35
Identity = 69/149 (46.31%), Postives = 97/149 (65.10%), Query Frame = 3
Query:    9 SKRAFAYFILTGGRFVYASLIRLLILKFVLSMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTEEDIQLANSVDVASLRDTQEDSVRVKNPEWLVVVGVCTHLGCIPCKNGGDFGGWINPCHG*HDDISEWIHIGTSPSN 455
            +++ F+Y +        A   +  + +FV SMSAS DVLA++ +E+ LS I  G  +  KWRGKP+F+R RT+++I    +V+V+ LRD Q D  RVK PEW++++GVCTHLGC+P  N GDFGG+  PCHG H D S  I  G +P N
Sbjct:  109 ARKGFSYLVTATTTVGVAYAAKNAVSQFVSSMSASADVLAMSKIEIKLSDIPEGKNMAFKWRGKPLFVRHRTKKEIDQEAAVEVSQLRDPQHDLERVKKPEWVILIGVCTHLGCVPIANAGDFGGYYCPCHGSHYDASGRIRKGPAPLN 257          
BLAST of EY691978 vs. ExPASy Swiss-Prot
Match: UCRIL_HUMAN (Cytochrome b-c1 complex subunit Rieske-like protein 1 OS=Homo sapiens GN=UQCRFSL1 PE=2 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 6.324e-35
Identity = 69/149 (46.31%), Postives = 98/149 (65.77%), Query Frame = 3
Query:    9 SKRAFAYFILTGGRFVYASLIRLLILKFVLSMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTEEDIQLANSVDVASLRDTQEDSVRVKNPEWLVVVGVCTHLGCIPCKNGGDFGGWINPCHG*HDDISEWIHIGTSPSN 455
            +++ F+Y +        A   +  + +FV SMSAS DVLALA +E+ LS I  G  +  KWRGKP+F+R RT+++I+   +V+++ LRD Q D  RVK PEW++++GVCTHLGC+P  N GDFGG+  PCHG H D S  I +G +  N
Sbjct:  118 ARKGFSYLVTGVTTVGVAYAAKNAVTQFVSSMSASADVLALAKIEIKLSDIPEGKNMAFKWRGKPLFVRHRTQKEIKQEAAVELSQLRDPQHDLDRVKKPEWVILIGVCTHLGCVPIANAGDFGGYYCPCHGSHYDASGRIRLGPATLN 266          
BLAST of EY691978 vs. ExPASy Swiss-Prot
Match: UCRI_RHORU (Ubiquinol-cytochrome c reductase iron-sulfur subunit OS=Rhodospirillum rubrum GN=petA PE=1 SV=2)

HSP 1 Score: 142.51 bits (358), Expect = 3.470e-33
Identity = 75/147 (51.02%), Postives = 96/147 (65.31%), Query Frame = 3
Query:   30 FILTGGRFVYASLIRLLILKFVLSMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTEEDIQLANSVDVASLRDTQEDSVRVKNPEWLVVVGVCTHLGCIPC--KNG---GDFGGWINPCHG*HDDISEWIHIGTSPSN 455
            F++ G   V A  + L +  F+  M+ + D LALAS EVD+S+I  G  +TV WRGKPVF+R RT+++I +A +VD ASLRD Q D  RV+  +WLV+VGVCTHLGCIP   K G   GDF GW  PCHG H D +  I  G +P N
Sbjct:   20 FLIYGTTAVGAVGVALAVWPFIDFMNPAADTLALASTEVDVSAIAEGQAITVTWRGKPVFVRHRTQKEIVVARAVDPASLRDPQTDEARVQQAQWLVMVGVCTHLGCIPLGQKAGDPKGDFDGWFCPCHGSHYDSAGRIRKGPAPLN 166          
BLAST of EY691978 vs. ExPASy Swiss-Prot
Match: UCRI_PARDE (Ubiquinol-cytochrome c reductase iron-sulfur subunit OS=Paracoccus denitrificans GN=petA PE=1 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 8.548e-32
Identity = 75/164 (45.73%), Postives = 96/164 (58.54%), Query Frame = 3
Query:    6 ASKRAFAYFILTGGRFVYASLIRLLILKFVLSMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTEEDIQLANSVDVASLRD-------------TQEDSVRVKNPEWLVVVGVCTHLGCIPCKNG-GDFGGWINPCHG*HDDISEWIHIGTSPSN 455
            A++R F Y+   G   V A      ++     M+ S DV ALAS++VD+S +E GT +TVKW GKPVFIRRRTE++IQ    VD+  L D             T E+    +  EWLV++GVCTHLGC+P  +G GDFGGW  PCHG H D S  I  G +P N
Sbjct:   13 ATRRDFLYYATAGAGTVAAGAAAWTLVN---QMNPSADVQALASIQVDVSGVETGTQLTVKWLGKPVFIRRRTEDEIQAGREVDLGQLIDRSAQNSNKPDAPATDENRTMDEAGEWLVMIGVCTHLGCVPIGDGAGDFGGWFCPCHGSHYDTSGRIRRGPAPQN 173          
BLAST of EY691978 vs. ExPASy Swiss-Prot
Match: UCRI_RICBR (Ubiquinol-cytochrome c reductase iron-sulfur subunit OS=Rickettsia bellii (strain RML369-C) GN=petA PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 6.126e-30
Identity = 70/153 (45.75%), Postives = 93/153 (60.78%), Query Frame = 3
Query:    3 DASKRAFAYFILTGGRFVYASLIRLLILKFVLSMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTEEDIQLANSVDVASLRDTQEDSVRVK--NPEWLVVVGVCTHLGCIPCKNGGDFGGWINPCHG*HDDISEWIHIGTSPSN 455
            D SK +   F++     V A      +   + S++ S DVLAL+S+EVDLS+I  G TVTVKW+GKPVFI  RT + I  A +V ++ L D +ED  RVK  +  WLV +G+CTHLGC+P  N GD+ GW  PCHG   D S  +  G +P N
Sbjct:   17 DRSKTSRRDFMVLTASSVAAVGAACTLWPLINSLNPSADVLALSSIEVDLSNIAVGQTVTVKWQGKPVFITNRTPDKIAEARAVKMSELIDPEEDQDRVKAGHDNWLVTIGICTHLGCVPLANQGDYDGWFCPCHGSQYDSSGRVRRGPAPLN 169          
The following BLAST results are available for this feature:
BLAST of EY691978 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
UCRI_LAGLA1.664e-3544.97Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
UCRI_BOVIN2.174e-3546.31Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
UCRI_MOUSE2.839e-3546.31Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
UCRI_AOTAZ2.839e-3544.97Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
UCRI_SAISC3.708e-3544.30Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
UCRI_RAT3.708e-3546.31Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
UCRIL_HUMAN6.324e-3546.31Cytochrome b-c1 complex subunit Rieske-like protei... [more]
UCRI_RHORU3.470e-3351.02Ubiquinol-cytochrome c reductase iron-sulfur subun... [more]
UCRI_PARDE8.548e-3245.73Ubiquinol-cytochrome c reductase iron-sulfur subun... [more]
UCRI_RICBR6.126e-3045.75Ubiquinol-cytochrome c reductase iron-sulfur subun... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-086-A06-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY691978 ID=EY691978; Name=EY691978; organism=Citrus sinensis; type=EST; length=970bp
GTGACGCCAGCAAGCGTGCATTTGCTTATTTTATCTTGACAGGTGGCAGG
TTTGTGTATGCCTCCTTAATTCGTCTTTTGATCCTCAAGTTTGTTCTTAG
CATGTCTGCGAGCAAAGATGTCCTTGCCCTTGCCTCCCTTGAGGTTGACC
TATCCAGCATTGAACCCGGGACTACTGTTACAGTCAAGTGGCGTGGGAAG
CCTGTTTTCATCAGGCGTCGGACTGAAGAGGATATTCAGTTGGCTAACAG
TGTTGATGTAGCGTCACTCCGGGACACGCAGGAAGATTCTGTCAGGGTTA
AGAATCCAGAATGGCTTGTCGTTGTTGGTGTGTGCACACATTTGGGGTGC
ATTCCATGTAAAAATGGTGGTGACTTTGGAGGTTGGATCAACCCCTGCCA
TGGATAGCACGATGACATATCTGAGTGGATACACATAGGGACATCACCTT
CAAATCAGTGGTACCGAATCAGCACTCATGGACGACAAAATATAAAGAAT
GGCTGCAAATACAAAATGGATACAATATAAAAACAACCACTAACGACGAG
AAAGGCTAACACCACCTACCCATACACTGTAGAACAAGCCTCAGAAGAAC
ATATTGTAAAGATAGCATGTGAAAATGCATCAACAATGCGTACATCAACC
AACTCACGAAAGCCTAACATAGAAGCGATTGCACAATAGAGTGACAGAAG
AAACCATAAACGCTAATCCGACCGCAGAACGCACCACCGGAACAAAACCA
ACAAGAGGGATAACTAGAACAATGACAGGACGACGACGAATCCCACACCG
ACTCATAAGCACAAACCACACCATGAGACTCAGAAACAACCAAACTGATG
GCAGACAAAGCAAAAGCCGAGAAGGAAAGCTACGCATAAGACAAATAAGA
AACAACACGACGAACGCAAAACTGTCTGGAATAACATAAAAAACTCAAGA
AAACGATGAGAAAGAAATTA
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