EY691978

Overview
NameEY691978
Unique NameEY691978
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length970
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY691978 vs. ExPASy Swiss-Prot
Match: UCRI_RHOCA (Ubiquinol-cytochrome c reductase iron-sulfur subunit OS=Rhodobacter capsulatus GN=petA PE=1 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 6.126e-30
Identity = 68/137 (49.64%), Postives = 86/137 (62.77%), Query Frame = 3
Query:  102 MSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTEEDIQLANSVDVASLRDTQEDSVR------------------VKNPEWLVVVGVCTHLGCIPC-KNGGDFGGWINPCHG*HDDISEWIHIGTSPSN 455
            M+AS DV A+AS+ VD+S++E GT +TVKWRGKPVFIRRR E+DI+LA SV + +LRDT  ++                        EWLV++GVCTHLGC+P     GDFGGW  PCHG H D +  I  G +P N
Sbjct:   38 MNASADVKAMASIFVDVSAVEVGTQLTVKWRGKPVFIRRRDEKDIELARSVPLGALRDTSAENANKPGAEATDENRTLPAFDGTNTGEWLVMLGVCTHLGCVPMGDKSGDFGGWFCPCHGSHYDSAGRIRKGPAPRN 174          
BLAST of EY691978 vs. ExPASy Swiss-Prot
Match: UCRI_RICPR (Ubiquinol-cytochrome c reductase iron-sulfur subunit OS=Rickettsia prowazekii GN=petA PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 3.971e-29
Identity = 61/121 (50.41%), Postives = 82/121 (67.77%), Query Frame = 3
Query:   99 SMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTEEDIQLANSVDVASLRDTQEDSVRVK--NPEWLVVVGVCTHLGCIPCKNGGDFGGWINPCHG*HDDISEWIHIGTSPSN 455
            S + S DVLAL+S+EVDLS+I  G TVTVKW+GKP+FI  RT ++I  A +V ++ L D + D VRVK  +  WLV +G+CTHLGC+P  + G++ GW  PCHG   D S  +  G +P N
Sbjct:   40 SFNPSADVLALSSIEVDLSNIAIGQTVTVKWQGKPIFITNRTHDEIAAARAVKMSELIDPERDEVRVKAGHDNWLVTIGICTHLGCVPLSHKGEYNGWFCPCHGSQYDSSGRVRKGPAPLN 160          
BLAST of EY691978 vs. ExPASy Swiss-Prot
Match: UCRI_RICTY (Ubiquinol-cytochrome c reductase iron-sulfur subunit OS=Rickettsia typhi GN=petA PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 6.773e-29
Identity = 62/121 (51.24%), Postives = 82/121 (67.77%), Query Frame = 3
Query:   99 SMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTEEDIQLANSVDVASLRDTQEDSVRVK--NPEWLVVVGVCTHLGCIPCKNGGDFGGWINPCHG*HDDISEWIHIGTSPSN 455
            S++ S DVLAL+S+EVDLSSI  G TVTVKW+GKP+FI  RT + I  A +V ++ L D ++D VRVK  +  WLV +G+CTHLGC+P  N G++ GW  PCHG   D S  +  G +  N
Sbjct:   40 SLNPSTDVLALSSIEVDLSSIAIGQTVTVKWQGKPIFITNRTPDGIASARAVKMSELIDPEKDEVRVKAGHDNWLVTIGICTHLGCVPLSNQGEYNGWFCPCHGSQYDSSGRVRKGPASLN 160          
BLAST of EY691978 vs. ExPASy Swiss-Prot
Match: UCRI_RICFE (Ubiquinol-cytochrome c reductase iron-sulfur subunit OS=Rickettsia felis GN=petA PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 1.155e-28
Identity = 62/121 (51.24%), Postives = 81/121 (66.94%), Query Frame = 3
Query:   99 SMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTEEDIQLANSVDVASLRDTQEDSVRVK--NPEWLVVVGVCTHLGCIPCKNGGDFGGWINPCHG*HDDISEWIHIGTSPSN 455
            S++ S DVLAL+S+EVDLS+I  G TVTVKW+GKPVFI  RT + I  A +V ++ L D + D  RVK  +  WLV +G+CTHLGC+P  N G++ GW  PCHG   D S  +  G +P N
Sbjct:   40 SLNPSADVLALSSIEVDLSNIAVGQTVTVKWQGKPVFITNRTPDKIAEARAVKMSELIDPETDEARVKAGHDNWLVTIGICTHLGCVPLANQGEYDGWFCPCHGSQYDSSGRVRRGPAPLN 160          
BLAST of EY691978 vs. ExPASy Swiss-Prot
Match: UCRI_RICCN (Ubiquinol-cytochrome c reductase iron-sulfur subunit OS=Rickettsia conorii GN=petA PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 1.155e-28
Identity = 62/121 (51.24%), Postives = 81/121 (66.94%), Query Frame = 3
Query:   99 SMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTEEDIQLANSVDVASLRDTQEDSVRVK--NPEWLVVVGVCTHLGCIPCKNGGDFGGWINPCHG*HDDISEWIHIGTSPSN 455
            S++ S DVLAL+S+EVDLS+I  G TVTVKW+GKPVFI  RT + I  A +V ++ L D + D  RVK  +  WLV +G+CTHLGC+P  N G++ GW  PCHG   D S  +  G +P N
Sbjct:   40 SLNPSADVLALSSIEVDLSNIAVGQTVTVKWQGKPVFITNRTPDKIAEARAVKMSELIDPEADQARVKAGHDNWLVTIGICTHLGCVPLANQGEYDGWFCPCHGSQYDSSGRVRRGPAPLN 160          
BLAST of EY691978 vs. ExPASy Swiss-Prot
Match: UCRI_RHOSH (Ubiquinol-cytochrome c reductase iron-sulfur subunit OS=Rhodobacter sphaeroides GN=petA PE=1 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 5.733e-28
Identity = 70/164 (42.68%), Postives = 91/164 (55.49%), Query Frame = 3
Query:    9 SKRAFAYFILTGGRFVYASLIRLLILKFVLSMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTEEDIQLANSVDVASLRDTQEDSVRV--------------KNPEWLVVVGVCTHLGCIPCKN-GGDFGGWINPCHG*HDDISEWIHIGTSPSN 455
            ++R F Y+   G   V        +   +  M+ S DV ALAS+ VD+SS+EPG  +TVK+ GKP+FIRRRTE DI+L  SV +  L DT   +  +              +  EWLV+ GVCTHLGC+P     GDFGGW  PCHG H D +  I  G +P N
Sbjct:   10 TRRDFLYYATAGAGAVATGAA---VWPLINQMNPSADVQALASIFVDVSSVEPGVQLTVKFLGKPIFIRRRTEADIELGRSVQLGQLVDTNARNANIDAGAEATDQNRTLDEAGEWLVMWGVCTHLGCVPIGGVSGDFGGWFCPCHGSHYDSAGRIRKGPAPEN 170          
BLAST of EY691978 vs. ExPASy Swiss-Prot
Match: UCRI_RHOVI (Ubiquinol-cytochrome c reductase iron-sulfur subunit OS=Rhodopseudomonas viridis GN=petA PE=3 SV=2)

HSP 1 Score: 118.242 bits (295), Expect = 7.009e-26
Identity = 64/154 (41.56%), Postives = 88/154 (57.14%), Query Frame = 3
Query:    3 DASKRAFAYFILTGGRFVYASLIRLLILKFVLSMSASKDVLAL-ASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTEEDIQLANSVDVASLRDTQEDSVRVK--NPEWLVVVGVCTHLGCIPCKNGGDFGGWINPCHG*HDDISEWIHIGTSPSN 455
            +A++R F Y        V A+ +  +   F+  M+     +A  A +++D+S +  G  V V WRGKP+FIR RT ++IQ   + DV +L D Q DS RVK    EWLVV   CTHLGCIP  + GD+GGW  PCHG   D S  +  G +P+N
Sbjct:    8 EATRRDFLYVATAA---VGAAGVAAVAWPFITQMNPDAATIAAGAPIDIDISPVTEGQIVRVFWRGKPIFIRHRTAKEIQSEEAADVGALIDPQPDSARVKPGKAEWLVVYASCTHLGCIPLGHQGDWGGWFCPCHGSQYDASGRVRKGPAPTN 158          
BLAST of EY691978 vs. ExPASy Swiss-Prot
Match: UCRI_BRAJA (Ubiquinol-cytochrome c reductase iron-sulfur subunit OS=Bradyrhizobium japonicum GN=petA PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.726e-24
Identity = 58/125 (46.40%), Postives = 79/125 (63.20%), Query Frame = 3
Query:   90 FVLSMSASKDVLAL-ASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTEEDIQLANSVDVASLRDTQEDSVRVKN--PEWLVVVGVCTHLGCIPCKNGGDFGGWINPCHG*HDDISEWIHIGTSPSN 455
            F+  M+     +A  A +EVDLS I  G  + V WRGKP++I  RT++ I  A +V+VASL D Q D  RVK+   +WLVV+G+CTHLGCIP  + G++ G+  PCHG   D S  I  G +P+N
Sbjct:   35 FISQMNPDASTIAAGAPIEVDLSPIAEGQDIKVFWRGKPIYISHRTKKQIDEARAVNVASLPDPQSDEARVKSGHEQWLVVIGICTHLGCIPIAHEGNYDGFFCPCHGSQYDSSGRIRQGPAPAN 159          
BLAST of EY691978 vs. ExPASy Swiss-Prot
Match: UCRI_CHRVI (Ubiquinol-cytochrome c reductase iron-sulfur subunit OS=Chromatium vinosum GN=petA PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.989e-13
Identity = 47/133 (35.34%), Postives = 67/133 (50.38%), Query Frame = 3
Query:   81 ILKFVLSMSASKDVLAL-ASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTEEDIQLANSVDVASLRDTQE---------DSVRVKNPEWLVVVGVCTHLGCIPC---------KNGGDFGGWINPCHG*HDDIS 422
            ++ FV SM+ S    A  A +E D+S +EPG  + VKWRG PV++  R+ E +   +S D   +  T E         +  R   PE+LV +G+CTHLGC P             G  GG+  PCHG   D++
Sbjct:   40 LVPFVASMNPSARARAAGAPVEADISKLEPGALLRVKWRGMPVWVVHRSSEMLAALSSNDPKLVDPTSEVPQQPDYCKNPTRSIKPEYLVAIGICTHLGCSPTYRPEFGPDDLGSGWKGGFHCPCHGSRFDLA 172          
The following BLAST results are available for this feature:
BLAST of EY691978 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
UCRI_RHOCA6.126e-3049.64Ubiquinol-cytochrome c reductase iron-sulfur subun... [more]
UCRI_RICPR3.971e-2950.41Ubiquinol-cytochrome c reductase iron-sulfur subun... [more]
UCRI_RICTY6.773e-2951.24Ubiquinol-cytochrome c reductase iron-sulfur subun... [more]
UCRI_RICFE1.155e-2851.24Ubiquinol-cytochrome c reductase iron-sulfur subun... [more]
UCRI_RICCN1.155e-2851.24Ubiquinol-cytochrome c reductase iron-sulfur subun... [more]
UCRI_RHOSH5.733e-2842.68Ubiquinol-cytochrome c reductase iron-sulfur subun... [more]
UCRI_RHOVI7.009e-2641.56Ubiquinol-cytochrome c reductase iron-sulfur subun... [more]
UCRI_BRAJA1.726e-2446.40Ubiquinol-cytochrome c reductase iron-sulfur subun... [more]
UCRI_CHRVI3.989e-1335.34Ubiquinol-cytochrome c reductase iron-sulfur subun... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-086-A06-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY691978 ID=EY691978; Name=EY691978; organism=Citrus sinensis; type=EST; length=970bp
GTGACGCCAGCAAGCGTGCATTTGCTTATTTTATCTTGACAGGTGGCAGG
TTTGTGTATGCCTCCTTAATTCGTCTTTTGATCCTCAAGTTTGTTCTTAG
CATGTCTGCGAGCAAAGATGTCCTTGCCCTTGCCTCCCTTGAGGTTGACC
TATCCAGCATTGAACCCGGGACTACTGTTACAGTCAAGTGGCGTGGGAAG
CCTGTTTTCATCAGGCGTCGGACTGAAGAGGATATTCAGTTGGCTAACAG
TGTTGATGTAGCGTCACTCCGGGACACGCAGGAAGATTCTGTCAGGGTTA
AGAATCCAGAATGGCTTGTCGTTGTTGGTGTGTGCACACATTTGGGGTGC
ATTCCATGTAAAAATGGTGGTGACTTTGGAGGTTGGATCAACCCCTGCCA
TGGATAGCACGATGACATATCTGAGTGGATACACATAGGGACATCACCTT
CAAATCAGTGGTACCGAATCAGCACTCATGGACGACAAAATATAAAGAAT
GGCTGCAAATACAAAATGGATACAATATAAAAACAACCACTAACGACGAG
AAAGGCTAACACCACCTACCCATACACTGTAGAACAAGCCTCAGAAGAAC
ATATTGTAAAGATAGCATGTGAAAATGCATCAACAATGCGTACATCAACC
AACTCACGAAAGCCTAACATAGAAGCGATTGCACAATAGAGTGACAGAAG
AAACCATAAACGCTAATCCGACCGCAGAACGCACCACCGGAACAAAACCA
ACAAGAGGGATAACTAGAACAATGACAGGACGACGACGAATCCCACACCG
ACTCATAAGCACAAACCACACCATGAGACTCAGAAACAACCAAACTGATG
GCAGACAAAGCAAAAGCCGAGAAGGAAAGCTACGCATAAGACAAATAAGA
AACAACACGACGAACGCAAAACTGTCTGGAATAACATAAAAAACTCAAGA
AAACGATGAGAAAGAAATTA
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