EY691970 | Citrus Genome Database

Overview


Name	EY691970
Unique Name	EY691970
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	850

Libraries


Library Name	Type
Sweet orange bark, greenhouse plant	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

BLAST of EY691970 vs. ExPASy Swiss-Prot
Match: H2AZ_SHEEP (Histone H2A.Z OS=Ovis aries GN=H2AFZ PE=2 SV=3)

HSP 1 Score: 115.161 bits (287), Expect = 6.074e-27
Identity = 61/80 (76.25%), Postives = 63/80 (78.75%), Query Frame = 1

Query:  154 VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEEL 393
            VSRS RAGLQFPVGR+HR LK               Y+AAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEEL
Sbjct:   18 VSRSQRAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEEL 97

HSP 2 Score: 27.335 bits (59), Expect = 6.074e-27
Identity = 15/22 (68.18%), Postives = 17/22 (77.27%), Query Frame = 3

Query:  405 LKETIAGGGVIPSYPTKSLINK 470
            +K TIAGGGVIP +  KSLI K
Sbjct:  101 IKATIAGGGVIP-HIHKSLIGK 121

BLAST of EY691970 vs. ExPASy Swiss-Prot
Match: H2AZ_RAT (Histone H2A.Z OS=Rattus norvegicus GN=H2afz PE=1 SV=2)

HSP 1 Score: 115.161 bits (287), Expect = 6.074e-27
Identity = 61/80 (76.25%), Postives = 63/80 (78.75%), Query Frame = 1

Query:  154 VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEEL 393
            VSRS RAGLQFPVGR+HR LK               Y+AAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEEL
Sbjct:   18 VSRSQRAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEEL 97

HSP 2 Score: 27.335 bits (59), Expect = 6.074e-27
Identity = 15/22 (68.18%), Postives = 17/22 (77.27%), Query Frame = 3

Query:  405 LKETIAGGGVIPSYPTKSLINK 470
            +K TIAGGGVIP +  KSLI K
Sbjct:  101 IKATIAGGGVIP-HIHKSLIGK 121

BLAST of EY691970 vs. ExPASy Swiss-Prot
Match: H2AZ_PONAB (Histone H2A.Z OS=Pongo abelii GN=H2AFZ PE=2 SV=3)

HSP 1 Score: 115.161 bits (287), Expect = 6.074e-27
Identity = 61/80 (76.25%), Postives = 63/80 (78.75%), Query Frame = 1

Query:  154 VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEEL 393
            VSRS RAGLQFPVGR+HR LK               Y+AAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEEL
Sbjct:   18 VSRSQRAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEEL 97

HSP 2 Score: 27.335 bits (59), Expect = 6.074e-27
Identity = 15/22 (68.18%), Postives = 17/22 (77.27%), Query Frame = 3

Query:  405 LKETIAGGGVIPSYPTKSLINK 470
            +K TIAGGGVIP +  KSLI K
Sbjct:  101 IKATIAGGGVIP-HIHKSLIGK 121

BLAST of EY691970 vs. ExPASy Swiss-Prot
Match: H2AZ_ONCMY (Histone H2A.Z OS=Oncorhynchus mykiss GN=h2afz PE=1 SV=4)

HSP 1 Score: 115.161 bits (287), Expect = 6.074e-27
Identity = 61/80 (76.25%), Postives = 63/80 (78.75%), Query Frame = 1

Query:  154 VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEEL 393
            VSRS RAGLQFPVGR+HR LK               Y+AAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEEL
Sbjct:   18 VSRSQRAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEEL 97

HSP 2 Score: 27.335 bits (59), Expect = 6.074e-27
Identity = 15/22 (68.18%), Postives = 17/22 (77.27%), Query Frame = 3

Query:  405 LKETIAGGGVIPSYPTKSLINK 470
            +K TIAGGGVIP +  KSLI K
Sbjct:  101 IKATIAGGGVIP-HIHKSLIGK 121

BLAST of EY691970 vs. ExPASy Swiss-Prot
Match: H2AZ_MOUSE (Histone H2A.Z OS=Mus musculus GN=H2afz PE=1 SV=2)

HSP 1 Score: 115.161 bits (287), Expect = 6.074e-27
Identity = 61/80 (76.25%), Postives = 63/80 (78.75%), Query Frame = 1

Query:  154 VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEEL 393
            VSRS RAGLQFPVGR+HR LK               Y+AAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEEL
Sbjct:   18 VSRSQRAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEEL 97

HSP 2 Score: 27.335 bits (59), Expect = 6.074e-27
Identity = 15/22 (68.18%), Postives = 17/22 (77.27%), Query Frame = 3

Query:  405 LKETIAGGGVIPSYPTKSLINK 470
            +K TIAGGGVIP +  KSLI K
Sbjct:  101 IKATIAGGGVIP-HIHKSLIGK 121

BLAST of EY691970 vs. ExPASy Swiss-Prot
Match: H2AZ_HUMAN (Histone H2A.Z OS=Homo sapiens GN=H2AFZ PE=1 SV=2)

HSP 1 Score: 115.161 bits (287), Expect = 6.074e-27
Identity = 61/80 (76.25%), Postives = 63/80 (78.75%), Query Frame = 1

Query:  154 VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEEL 393
            VSRS RAGLQFPVGR+HR LK               Y+AAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEEL
Sbjct:   18 VSRSQRAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEEL 97

HSP 2 Score: 27.335 bits (59), Expect = 6.074e-27
Identity = 15/22 (68.18%), Postives = 17/22 (77.27%), Query Frame = 3

Query:  405 LKETIAGGGVIPSYPTKSLINK 470
            +K TIAGGGVIP +  KSLI K
Sbjct:  101 IKATIAGGGVIP-HIHKSLIGK 121

BLAST of EY691970 vs. ExPASy Swiss-Prot
Match: H2AZ_CHICK (Histone H2A.Z OS=Gallus gallus GN=H2AFZ PE=1 SV=3)

HSP 1 Score: 115.161 bits (287), Expect = 6.074e-27
Identity = 61/80 (76.25%), Postives = 63/80 (78.75%), Query Frame = 1

Query:  154 VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEEL 393
            VSRS RAGLQFPVGR+HR LK               Y+AAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEEL
Sbjct:   18 VSRSQRAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEEL 97

HSP 2 Score: 27.335 bits (59), Expect = 6.074e-27
Identity = 15/22 (68.18%), Postives = 17/22 (77.27%), Query Frame = 3

Query:  405 LKETIAGGGVIPSYPTKSLINK 470
            +K TIAGGGVIP +  KSLI K
Sbjct:  101 IKATIAGGGVIP-HIHKSLIGK 121

BLAST of EY691970 vs. ExPASy Swiss-Prot
Match: H2AZ_BOVIN (Histone H2A.Z OS=Bos taurus GN=H2AFZ PE=1 SV=2)

HSP 1 Score: 115.161 bits (287), Expect = 6.074e-27
Identity = 61/80 (76.25%), Postives = 63/80 (78.75%), Query Frame = 1

Query:  154 VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEEL 393
            VSRS RAGLQFPVGR+HR LK               Y+AAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEEL
Sbjct:   18 VSRSQRAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEEL 97

HSP 2 Score: 27.335 bits (59), Expect = 6.074e-27
Identity = 15/22 (68.18%), Postives = 17/22 (77.27%), Query Frame = 3

Query:  405 LKETIAGGGVIPSYPTKSLINK 470
            +K TIAGGGVIP +  KSLI K
Sbjct:  101 IKATIAGGGVIP-HIHKSLIGK 121

BLAST of EY691970 vs. ExPASy Swiss-Prot
Match: H2AV_XENTR (Histone H2A.V OS=Xenopus tropicalis GN=h2afv PE=2 SV=3)

HSP 1 Score: 114.775 bits (286), Expect = 7.907e-27
Identity = 61/80 (76.25%), Postives = 63/80 (78.75%), Query Frame = 1

Query:  154 VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEEL 393
            VSRS RAGLQFPVGR+HR LK               Y+AAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEEL
Sbjct:   18 VSRSQRAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEEL 97

HSP 2 Score: 27.335 bits (59), Expect = 7.907e-27
Identity = 15/22 (68.18%), Postives = 17/22 (77.27%), Query Frame = 3

Query:  405 LKETIAGGGVIPSYPTKSLINK 470
            +K TIAGGGVIP +  KSLI K
Sbjct:  101 IKATIAGGGVIP-HIHKSLIGK 121

BLAST of EY691970 vs. ExPASy Swiss-Prot
Match: H2AV_XENLA (Histone H2A.V OS=Xenopus laevis GN=h2afv PE=2 SV=3)

HSP 1 Score: 114.775 bits (286), Expect = 7.907e-27
Identity = 61/80 (76.25%), Postives = 63/80 (78.75%), Query Frame = 1

Query:  154 VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEEL 393
            VSRS RAGLQFPVGR+HR LK               Y+AAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEEL
Sbjct:   18 VSRSQRAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEEL 97

HSP 2 Score: 27.335 bits (59), Expect = 7.907e-27
Identity = 15/22 (68.18%), Postives = 17/22 (77.27%), Query Frame = 3

Query:  405 LKETIAGGGVIPSYPTKSLINK 470
            +K TIAGGGVIP +  KSLI K
Sbjct:  101 IKATIAGGGVIP-HIHKSLIGK 121

The following BLAST results are available for this feature:

BLAST of EY691970 vs. ExPASy Swiss-Prot

BLAST of EY691970 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 233


Match Name	E-value	Identity	Description
H2AZ_SHEEP	6.074e-27	76.25	Histone H2A.Z OS=Ovis aries GN=H2AFZ PE=2 SV=3	[more]
H2AZ_RAT	6.074e-27	76.25	Histone H2A.Z OS=Rattus norvegicus GN=H2afz PE=1 S...	[more]
H2AZ_PONAB	6.074e-27	76.25	Histone H2A.Z OS=Pongo abelii GN=H2AFZ PE=2 SV=3	[more]
H2AZ_ONCMY	6.074e-27	76.25	Histone H2A.Z OS=Oncorhynchus mykiss GN=h2afz PE=1...	[more]
H2AZ_MOUSE	6.074e-27	76.25	Histone H2A.Z OS=Mus musculus GN=H2afz PE=1 SV=2	[more]
H2AZ_HUMAN	6.074e-27	76.25	Histone H2A.Z OS=Homo sapiens GN=H2AFZ PE=1 SV=2	[more]
H2AZ_CHICK	6.074e-27	76.25	Histone H2A.Z OS=Gallus gallus GN=H2AFZ PE=1 SV=3	[more]
H2AZ_BOVIN	6.074e-27	76.25	Histone H2A.Z OS=Bos taurus GN=H2AFZ PE=1 SV=2	[more]
H2AV_XENTR	7.907e-27	76.25	Histone H2A.V OS=Xenopus tropicalis GN=h2afv PE=2 ...	[more]
H2AV_XENLA	7.907e-27	76.25	Histone H2A.V OS=Xenopus laevis GN=h2afv PE=2 SV=3	[more]

Pages

Properties


Property Name	Value
Genbank description	CS00-C2-003-102-H08-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>EY691970 ID=EY691970; Name=EY691970; organism=Citrus sinensis; type=EST; length=850bp
AAAATTAAAAATAATTAATTATTTATTTAATTATTTTTAATTTAAAAGAA
GCTGTAGCAATTAGGCGGGAAAATGTCGGGCAAAGGAGCCAAAGGACTGA
TAACAGGCAAAACCACCATTAACAACAACAAGGATAAGGACAAGAAGAAA
CCCGTCTCCCGTTCTTCTCGTGCTGGTCTTCAGTTCCCAGTGGGAAGGGT
CCATCGTCTACTAAAGGAAAGGGCTGCTGCTCACGGAAGGGTTGGCGCAA
CAGCTGCTGTTTATACAGCAGCCATTTTGGAATATCTAACTGCCGAAGTG
TTGGAGTTGGCAGGGAATGCTAGCAAGGATTTGAAGGTCAAACGTATTAC
TCCAAGGCATTTGCAGCTTGCTATCCGAGGAGATGAAGAACTTTGACACT
CTCATTAAAGGAAACCATAGCCGGTGGAGGAGTTATTCCCTCATATCCCA
CCAAGTCCCTCATCAATAAATTCCTCCAAAAAATAAATTCGTGGACCCGT
CATCCTTCTCGGATTTTGTTTCTGGGTGAAAATATTAACGGAGCCGAAAT
ATTATACCTGAAAAATGGTTGCCACAAGAGGGGTTAAATGCCAAAGAACC
CACATTCCTCTCCATATCCCTCAATTCAGTCCACAACACATAATAGGACG
TCGTATTCATCTCGAGAAGAATTCAAACAGACTAACAGGTTCTATTCGAC
AGAAATCCACCCAGGTGTAGCCCTACAAACACGCTCAAGAACAAGCCAGT
GTTTTCAGACAGTCACATCAATTAGTATTTGCTAGCGCTTAGATAGTCTC
GCGCCCGTGCGTAAGAAGCCTGTACGCGACAGAACACAAAAAGCTCGAAG