EY691970

Overview
NameEY691970
Unique NameEY691970
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length850
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY691970 vs. ExPASy Swiss-Prot
Match: H2A_MYTCA (Histone H2A OS=Mytilus californianus PE=3 SV=3)

HSP 1 Score: 95.9005 bits (237), Expect = 3.047e-19
Identity = 52/79 (65.82%), Postives = 58/79 (73.42%), Query Frame = 1 
Query:  157 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEEL 393
            SRSSRAGLQFPVGR+HRLL++              Y AA+LEYL AEVLELAGNA++D K  RI PRHLQLAIR DEEL
Sbjct:   16 SRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPV-YLAAVLEYLAAEVLELAGNAARDNKKSRIIPRHLQLAIRNDEEL 93
[Close]
BLAST of EY691970 vs. ExPASy Swiss-Prot
Match: H2AX_DANRE (Histone H2A.x OS=Danio rerio GN=h2afx PE=2 SV=3)

HSP 1 Score: 95.9005 bits (237), Expect = 3.047e-19
Identity = 51/79 (64.56%), Postives = 59/79 (74.68%), Query Frame = 1 
Query:  157 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEEL 393
            +RSSRAGLQFPVGRVHRLL++              Y AA+LEYLTAE+LELAGNA++D K  RI PRHLQLA+R DEEL
Sbjct:   17 TRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPV-YLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAVRNDEEL 94
[Close]
BLAST of EY691970 vs. ExPASy Swiss-Prot
Match: H2A4_PSAMI (Late histone H2A.2.2 OS=Psammechinus miliaris PE=3 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 3.047e-19
Identity = 51/79 (64.56%), Postives = 58/79 (73.42%), Query Frame = 1 
Query:  157 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEEL 393
            SRSSRAGLQFPVGRVHR L++              Y AA+LEYLTAE+LELAGNA++D K  RI PRHLQLA+R DEEL
Sbjct:   16 SRSSRAGLQFPVGRVHRFLRKGNYANRVGAGAPV-YLAAVLEYLTAEILELAGNAARDNKKSRIIPRHLQLAVRNDEEL 93
[Close]
BLAST of EY691970 vs. ExPASy Swiss-Prot
Match: H2A1_XENLA (Histone H2A type 1 OS=Xenopus laevis PE=1 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 3.047e-19
Identity = 51/79 (64.56%), Postives = 59/79 (74.68%), Query Frame = 1 
Query:  157 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEEL 393
            +RSSRAGLQFPVGRVHRLL++              Y AA+LEYLTAE+LELAGNA++D K  RI PRHLQLA+R DEEL
Sbjct:   17 TRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPV-YLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAVRNDEEL 94
[Close]
BLAST of EY691970 vs. ExPASy Swiss-Prot
Match: H2A1_PSAMI (Late histone H2A.1 OS=Psammechinus miliaris PE=2 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 3.047e-19
Identity = 51/79 (64.56%), Postives = 58/79 (73.42%), Query Frame = 1 
Query:  157 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEEL 393
            +RSSRAGLQFPVGRVHR LK+              Y AA+LEYLTAE+LELAGNA++D K  RI PRHLQLA+R DEEL
Sbjct:   16 TRSSRAGLQFPVGRVHRFLKKGNYGSRVGAGAPV-YLAAVLEYLTAEILELAGNAARDNKKSRIIPRHLQLAVRNDEEL 93
[Close]
BLAST of EY691970 vs. ExPASy Swiss-Prot
Match: H2A_CRYNE (Histone H2A OS=Cryptococcus neoformans GN=HTA1 PE=3 SV=3)

HSP 1 Score: 95.5153 bits (236), Expect = 3.980e-19
Identity = 50/79 (63.29%), Postives = 58/79 (73.42%), Query Frame = 1 
Query:  157 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEEL 393
            SRSS+AGLQFPVGR+HRLLK+              Y AA+LEYL AE+LELAGNA++D K  RI PRHLQLA+R DEEL
Sbjct:   17 SRSSKAGLQFPVGRIHRLLKKGNYAQRIGSGAPV-YLAAVLEYLAAEILELAGNAARDNKKSRIVPRHLQLAVRNDEEL 94
[Close]
BLAST of EY691970 vs. ExPASy Swiss-Prot
Match: H2A_ACRFO (Histone H2A OS=Acropora formosa PE=3 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 3.980e-19
Identity = 50/79 (63.29%), Postives = 59/79 (74.68%), Query Frame = 1 
Query:  157 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEEL 393
            SRSSRAGLQFPVGR+HRLL++              Y AA+LEYL+AE+LELAGNA++D K  RI PRHLQLA+R DEEL
Sbjct:   16 SRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPV-YMAAVLEYLSAEILELAGNAARDNKKSRIIPRHLQLAVRNDEEL 93
[Close]
BLAST of EY691970 vs. ExPASy Swiss-Prot
Match: H2A4_RAT (Histone H2A type 4 OS=Rattus norvegicus PE=2 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 3.980e-19
Identity = 52/79 (65.82%), Postives = 58/79 (73.42%), Query Frame = 1 
Query:  157 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEEL 393
            SRS RAGLQFPVGRVHRLL++              Y AA+LEYLTAE+LELAGNA++D K  RI PRHLQLAIR DEEL
Sbjct:   17 SRSFRAGLQFPVGRVHRLLRQGNYAERIGAGTPV-YLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEEL 94
[Close]
BLAST of EY691970 vs. ExPASy Swiss-Prot
Match: H2A3_CHICK (Histone H2A-III OS=Gallus gallus PE=1 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 3.980e-19
Identity = 52/79 (65.82%), Postives = 58/79 (73.42%), Query Frame = 1 
Query:  157 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEEL 393
            SRSSRAGLQFPVGRVHRLL++              Y AA+LEYLTAE+LELAGN ++D K  RI PRHLQLAIR DEEL
Sbjct:   17 SRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPV-YLAAVLEYLTAEILELAGNPARDNKKTRIIPRHLQLAIRNDEEL 94
[Close]
BLAST of EY691970 vs. ExPASy Swiss-Prot
Match: H2A_URECA (Histone H2A OS=Urechis caupo PE=3 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 4.769e-19
Identity = 51/79 (64.56%), Postives = 58/79 (73.42%), Query Frame = 1 
Query:  157 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEEL 393
            SRSSRAGLQFPVGR+HRLL++              Y AA++EYL AEVLELAGNA++D K  RI PRHLQLAIR DEEL
Sbjct:   16 SRSSRAGLQFPVGRIHRLLRKGNYAERIGAGAPV-YLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEEL 93

HSP 2 Score: 21.1718 bits (43), Expect = 4.769e-19
Identity = 11/23 (47.83%), Postives = 13/23 (56.52%), Query Frame = 3 
Query:  414 TIAGGGVIPSYPTKSLINKFLQK 482
            TIA GGV+P+     L  K  QK
Sbjct:  101 TIAQGGVLPNIQAVLLPKKSSQK 123
The following BLAST results are available for this feature:
BLAST of EY691970 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 233
Match NameE-valueIdentityDescription
H2A_MYTCA3.047e-1965.82Histone H2A OS=Mytilus californianus PE=3 SV=3[more]
H2AX_DANRE3.047e-1964.56Histone H2A.x OS=Danio rerio GN=h2afx PE=2 SV=3[more]
H2A4_PSAMI3.047e-1964.56Late histone H2A.2.2 OS=Psammechinus miliaris PE=3... [more]
H2A1_XENLA3.047e-1964.56Histone H2A type 1 OS=Xenopus laevis PE=1 SV=2[more]
H2A1_PSAMI3.047e-1964.56Late histone H2A.1 OS=Psammechinus miliaris PE=2 S... [more]
H2A_CRYNE3.980e-1963.29Histone H2A OS=Cryptococcus neoformans GN=HTA1 PE=... [more]
H2A_ACRFO3.980e-1963.29Histone H2A OS=Acropora formosa PE=3 SV=2[more]
H2A4_RAT3.980e-1965.82Histone H2A type 4 OS=Rattus norvegicus PE=2 SV=2[more]
H2A3_CHICK3.980e-1965.82Histone H2A-III OS=Gallus gallus PE=1 SV=2[more]
H2A_URECA4.769e-1964.56Histone H2A OS=Urechis caupo PE=3 SV=2[more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-102-H08-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY691970 ID=EY691970; Name=EY691970; organism=Citrus sinensis; type=EST; length=850bp
AAAATTAAAAATAATTAATTATTTATTTAATTATTTTTAATTTAAAAGAA
GCTGTAGCAATTAGGCGGGAAAATGTCGGGCAAAGGAGCCAAAGGACTGA
TAACAGGCAAAACCACCATTAACAACAACAAGGATAAGGACAAGAAGAAA
CCCGTCTCCCGTTCTTCTCGTGCTGGTCTTCAGTTCCCAGTGGGAAGGGT
CCATCGTCTACTAAAGGAAAGGGCTGCTGCTCACGGAAGGGTTGGCGCAA
CAGCTGCTGTTTATACAGCAGCCATTTTGGAATATCTAACTGCCGAAGTG
TTGGAGTTGGCAGGGAATGCTAGCAAGGATTTGAAGGTCAAACGTATTAC
TCCAAGGCATTTGCAGCTTGCTATCCGAGGAGATGAAGAACTTTGACACT
CTCATTAAAGGAAACCATAGCCGGTGGAGGAGTTATTCCCTCATATCCCA
CCAAGTCCCTCATCAATAAATTCCTCCAAAAAATAAATTCGTGGACCCGT
CATCCTTCTCGGATTTTGTTTCTGGGTGAAAATATTAACGGAGCCGAAAT
ATTATACCTGAAAAATGGTTGCCACAAGAGGGGTTAAATGCCAAAGAACC
CACATTCCTCTCCATATCCCTCAATTCAGTCCACAACACATAATAGGACG
TCGTATTCATCTCGAGAAGAATTCAAACAGACTAACAGGTTCTATTCGAC
AGAAATCCACCCAGGTGTAGCCCTACAAACACGCTCAAGAACAAGCCAGT
GTTTTCAGACAGTCACATCAATTAGTATTTGCTAGCGCTTAGATAGTCTC
GCGCCCGTGCGTAAGAAGCCTGTACGCGACAGAACACAAAAAGCTCGAAG
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