EY691970 | Citrus Genome Database

Overview


Name	EY691970
Unique Name	EY691970
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	850

Libraries


Library Name	Type
Sweet orange bark, greenhouse plant	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

BLAST of EY691970 vs. ExPASy Swiss-Prot
Match: H2AV_PAGMA (Histone H2A.V OS=Pagrus major GN=h2afv PE=2 SV=3)

HSP 1 Score: 114.775 bits (286), Expect = 7.907e-27
Identity = 61/80 (76.25%), Postives = 63/80 (78.75%), Query Frame = 1

Query:  154 VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEEL 393
            VSRS RAGLQFPVGR+HR LK               Y+AAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEEL
Sbjct:   18 VSRSQRAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEEL 97

HSP 2 Score: 27.335 bits (59), Expect = 7.907e-27
Identity = 15/22 (68.18%), Postives = 17/22 (77.27%), Query Frame = 3

Query:  405 LKETIAGGGVIPSYPTKSLINK 470
            +K TIAGGGVIP +  KSLI K
Sbjct:  101 IKATIAGGGVIP-HIHKSLIGK 121

BLAST of EY691970 vs. ExPASy Swiss-Prot
Match: H2AV_MOUSE (Histone H2A.V OS=Mus musculus GN=H2afv PE=1 SV=3)

HSP 1 Score: 114.775 bits (286), Expect = 7.907e-27
Identity = 61/80 (76.25%), Postives = 63/80 (78.75%), Query Frame = 1

Query:  154 VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEEL 393
            VSRS RAGLQFPVGR+HR LK               Y+AAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEEL
Sbjct:   18 VSRSQRAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEEL 97

HSP 2 Score: 27.335 bits (59), Expect = 7.907e-27
Identity = 15/22 (68.18%), Postives = 17/22 (77.27%), Query Frame = 3

Query:  405 LKETIAGGGVIPSYPTKSLINK 470
            +K TIAGGGVIP +  KSLI K
Sbjct:  101 IKATIAGGGVIP-HIHKSLIGK 121

BLAST of EY691970 vs. ExPASy Swiss-Prot
Match: H2AV_HUMAN (Histone H2A.V OS=Homo sapiens GN=H2AFV PE=1 SV=3)

HSP 1 Score: 114.775 bits (286), Expect = 7.907e-27
Identity = 61/80 (76.25%), Postives = 63/80 (78.75%), Query Frame = 1

Query:  154 VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEEL 393
            VSRS RAGLQFPVGR+HR LK               Y+AAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEEL
Sbjct:   18 VSRSQRAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEEL 97

HSP 2 Score: 27.335 bits (59), Expect = 7.907e-27
Identity = 15/22 (68.18%), Postives = 17/22 (77.27%), Query Frame = 3

Query:  405 LKETIAGGGVIPSYPTKSLINK 470
            +K TIAGGGVIP +  KSLI K
Sbjct:  101 IKATIAGGGVIP-HIHKSLIGK 121

BLAST of EY691970 vs. ExPASy Swiss-Prot
Match: H2AV_DANRE (Histone H2A.V OS=Danio rerio GN=h2afv PE=2 SV=3)

HSP 1 Score: 114.775 bits (286), Expect = 7.907e-27
Identity = 61/80 (76.25%), Postives = 63/80 (78.75%), Query Frame = 1

Query:  154 VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEEL 393
            VSRS RAGLQFPVGR+HR LK               Y+AAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEEL
Sbjct:   18 VSRSQRAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEEL 97

HSP 2 Score: 27.335 bits (59), Expect = 7.907e-27
Identity = 15/22 (68.18%), Postives = 17/22 (77.27%), Query Frame = 3

Query:  405 LKETIAGGGVIPSYPTKSLINK 470
            +K TIAGGGVIP +  KSLI K
Sbjct:  101 IKATIAGGGVIP-HIHKSLIGK 121

BLAST of EY691970 vs. ExPASy Swiss-Prot
Match: H2AV_CHICK (Histone H2A.V OS=Gallus gallus GN=H2AFV PE=1 SV=2)

HSP 1 Score: 114.775 bits (286), Expect = 7.907e-27
Identity = 61/80 (76.25%), Postives = 63/80 (78.75%), Query Frame = 1

Query:  154 VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEEL 393
            VSRS RAGLQFPVGR+HR LK               Y+AAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEEL
Sbjct:   18 VSRSQRAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEEL 97

HSP 2 Score: 27.335 bits (59), Expect = 7.907e-27
Identity = 15/22 (68.18%), Postives = 17/22 (77.27%), Query Frame = 3

Query:  405 LKETIAGGGVIPSYPTKSLINK 470
            +K TIAGGGVIP +  KSLI K
Sbjct:  101 IKATIAGGGVIP-HIHKSLIGK 121

BLAST of EY691970 vs. ExPASy Swiss-Prot
Match: H2AV_BOVIN (Histone H2A.V OS=Bos taurus GN=H2AFV PE=2 SV=3)

HSP 1 Score: 114.775 bits (286), Expect = 7.907e-27
Identity = 61/80 (76.25%), Postives = 63/80 (78.75%), Query Frame = 1

Query:  154 VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEEL 393
            VSRS RAGLQFPVGR+HR LK               Y+AAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEEL
Sbjct:   18 VSRSQRAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEEL 97

HSP 2 Score: 27.335 bits (59), Expect = 7.907e-27
Identity = 15/22 (68.18%), Postives = 17/22 (77.27%), Query Frame = 3

Query:  405 LKETIAGGGVIPSYPTKSLINK 470
            +K TIAGGGVIP +  KSLI K
Sbjct:  101 IKATIAGGGVIP-HIHKSLIGK 121

BLAST of EY691970 vs. ExPASy Swiss-Prot
Match: H2AV_CAEEL (Histone H2A.V OS=Caenorhabditis elegans GN=htz-1 PE=2 SV=3)

HSP 1 Score: 115.546 bits (288), Expect = 2.252e-26
Identity = 60/80 (75.00%), Postives = 64/80 (80.00%), Query Frame = 1

Query:  154 VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEEL 393
            VSRS+RAGLQFPVGR+HR LK+              Y+AAILEYLTAEVLELAGNASKDLKVKRITPRHL LAIRGDEEL
Sbjct:   20 VSRSARAGLQFPVGRIHRFLKQRTTSSGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLHLAIRGDEEL 99

HSP 2 Score: 25.0238 bits (53), Expect = 2.252e-26
Identity = 13/22 (59.09%), Postives = 17/22 (77.27%), Query Frame = 3

Query:  405 LKETIAGGGVIPSYPTKSLINK 470
            +K TIAGGGVIP +  + L+NK
Sbjct:  103 IKATIAGGGVIP-HIHRYLMNK 123

BLAST of EY691970 vs. ExPASy Swiss-Prot
Match: H2AV_RABIT (Histone H2A.V OS=Oryctolagus cuniculus GN=H2AFV PE=2 SV=3)

HSP 1 Score: 114.775 bits (286), Expect = 2.271e-26
Identity = 61/80 (76.25%), Postives = 63/80 (78.75%), Query Frame = 1

Query:  154 VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEEL 393
            VSRS RAGLQFPVGR+HR LK               Y+AAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEEL
Sbjct:   18 VSRSQRAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEEL 97

HSP 2 Score: 25.7942 bits (55), Expect = 2.271e-26
Identity = 14/22 (63.64%), Postives = 16/22 (72.73%), Query Frame = 3

Query:  405 LKETIAGGGVIPSYPTKSLINK 470
            +K TIAGGG IP +  KSLI K
Sbjct:  101 IKATIAGGGAIP-HIHKSLIGK 121

BLAST of EY691970 vs. ExPASy Swiss-Prot
Match: H2AV_TETTH (Histone H2A.Z OS=Tetrahymena thermophila GN=HTA3 PE=1 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 6.917e-25
Identity = 57/81 (70.37%), Postives = 60/81 (74.07%), Query Frame = 1

Query:  151 PVSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEEL 393
            P SRS +AGLQFPVGR+HR LK               Y AAILEYLTAEVLELAGNASKD KV+RITPRHL LAIRGDEEL
Sbjct:   27 PQSRSYKAGLQFPVGRIHRFLKGRVSAKNRVGATAAVYAAAILEYLTAEVLELAGNASKDFKVRRITPRHLLLAIRGDEEL 107

HSP 2 Score: 27.335 bits (59), Expect = 6.917e-25
Identity = 16/33 (48.48%), Postives = 21/33 (63.64%), Query Frame = 3

Query:  393 LTLSLKETIAGGGVIPSYPTKSLINKFLQKINS 491
            L + +K TIAGGGVIP +  K+L+ K   K  S
Sbjct:  107 LDILIKATIAGGGVIP-HIHKALLGKHSTKNRS 138

BLAST of EY691970 vs. ExPASy Swiss-Prot
Match: H2AZ_CRYNE (Histone H2A.Z OS=Cryptococcus neoformans GN=HTZ1 PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.532e-24
Identity = 54/79 (68.35%), Postives = 62/79 (78.48%), Query Frame = 1

Query:  157 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEEL 393
            +RSS+AGLQFPVGR+HR L+               Y A+I+EYLTAEVLELAGNA+KDL+VKRITPRHLQLAIRGDEEL
Sbjct:   24 TRSSKAGLQFPVGRIHRFLRNKNANNVRIGAKAAVYVASIMEYLTAEVLELAGNAAKDLRVKRITPRHLQLAIRGDEEL 102

HSP 2 Score: 26.1794 bits (56), Expect = 1.532e-24
Identity = 14/26 (53.85%), Postives = 19/26 (73.08%), Query Frame = 3

Query:  393 LTLSLKETIAGGGVIPSYPTKSLINK 470
            L L ++ TIAGGGV+P +  KSL+ K
Sbjct:  102 LDLLIRATIAGGGVLP-HIHKSLVAK 126

The following BLAST results are available for this feature:

BLAST of EY691970 vs. ExPASy Swiss-Prot

BLAST of EY691970 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 233


Match Name	E-value	Identity	Description
H2AV_PAGMA	7.907e-27	76.25	Histone H2A.V OS=Pagrus major GN=h2afv PE=2 SV=3	[more]
H2AV_MOUSE	7.907e-27	76.25	Histone H2A.V OS=Mus musculus GN=H2afv PE=1 SV=3	[more]
H2AV_HUMAN	7.907e-27	76.25	Histone H2A.V OS=Homo sapiens GN=H2AFV PE=1 SV=3	[more]
H2AV_DANRE	7.907e-27	76.25	Histone H2A.V OS=Danio rerio GN=h2afv PE=2 SV=3	[more]
H2AV_CHICK	7.907e-27	76.25	Histone H2A.V OS=Gallus gallus GN=H2AFV PE=1 SV=2	[more]
H2AV_BOVIN	7.907e-27	76.25	Histone H2A.V OS=Bos taurus GN=H2AFV PE=2 SV=3	[more]
H2AV_CAEEL	2.252e-26	75.00	Histone H2A.V OS=Caenorhabditis elegans GN=htz-1 P...	[more]
H2AV_RABIT	2.271e-26	76.25	Histone H2A.V OS=Oryctolagus cuniculus GN=H2AFV PE...	[more]
H2AV_TETTH	6.917e-25	70.37	Histone H2A.Z OS=Tetrahymena thermophila GN=HTA3 P...	[more]
H2AZ_CRYNE	1.532e-24	68.35	Histone H2A.Z OS=Cryptococcus neoformans GN=HTZ1 P...	[more]

Pages

Properties


Property Name	Value
Genbank description	CS00-C2-003-102-H08-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>EY691970 ID=EY691970; Name=EY691970; organism=Citrus sinensis; type=EST; length=850bp
AAAATTAAAAATAATTAATTATTTATTTAATTATTTTTAATTTAAAAGAA
GCTGTAGCAATTAGGCGGGAAAATGTCGGGCAAAGGAGCCAAAGGACTGA
TAACAGGCAAAACCACCATTAACAACAACAAGGATAAGGACAAGAAGAAA
CCCGTCTCCCGTTCTTCTCGTGCTGGTCTTCAGTTCCCAGTGGGAAGGGT
CCATCGTCTACTAAAGGAAAGGGCTGCTGCTCACGGAAGGGTTGGCGCAA
CAGCTGCTGTTTATACAGCAGCCATTTTGGAATATCTAACTGCCGAAGTG
TTGGAGTTGGCAGGGAATGCTAGCAAGGATTTGAAGGTCAAACGTATTAC
TCCAAGGCATTTGCAGCTTGCTATCCGAGGAGATGAAGAACTTTGACACT
CTCATTAAAGGAAACCATAGCCGGTGGAGGAGTTATTCCCTCATATCCCA
CCAAGTCCCTCATCAATAAATTCCTCCAAAAAATAAATTCGTGGACCCGT
CATCCTTCTCGGATTTTGTTTCTGGGTGAAAATATTAACGGAGCCGAAAT
ATTATACCTGAAAAATGGTTGCCACAAGAGGGGTTAAATGCCAAAGAACC
CACATTCCTCTCCATATCCCTCAATTCAGTCCACAACACATAATAGGACG
TCGTATTCATCTCGAGAAGAATTCAAACAGACTAACAGGTTCTATTCGAC
AGAAATCCACCCAGGTGTAGCCCTACAAACACGCTCAAGAACAAGCCAGT
GTTTTCAGACAGTCACATCAATTAGTATTTGCTAGCGCTTAGATAGTCTC
GCGCCCGTGCGTAAGAAGCCTGTACGCGACAGAACACAAAAAGCTCGAAG