EY691917

Overview
NameEY691917
Unique NameEY691917
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length862
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY691917_ssr476 microsatellite EY691917_ssr476:476..485. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
[Close]
BLAST of EY691917 vs. ExPASy Swiss-Prot
Match: ACT2_LUMTE (Actin-2 OS=Lumbricus terrestris GN=ACT2 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 7.889e-23
Identity = 52/72 (72.22%), Postives = 58/72 (80.56%), Query Frame = 3 
Query:   12 GRVGAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIAERMSKEITALATRNMKIQVQDPPK*KYRI 227
            G    GIHETTYNSIMKCDVDIRKDLY N VLSGG+TMFPGIA+RM KEITALA   MKI++  PP+ KY +
Sbjct:  269 GMESVGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMFPGIADRMQKEITALAPPTMKIKIIAPPERKYSV 340
[Close]
BLAST of EY691917 vs. ExPASy Swiss-Prot
Match: ACT_SCHPO (Actin OS=Schizosaccharomyces pombe GN=act1 PE=1 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 1.030e-22
Identity = 49/72 (68.06%), Postives = 60/72 (83.33%), Query Frame = 3 
Query:   12 GRVGAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIAERMSKEITALATRNMKIQVQDPPK*KYRI 227
            G   AGIHE TYNSIMKCDVDIRKDLYGN+V+SGG+TM+PGIA+RM KEI ALA  +MK+++  PP+ KY +
Sbjct:  268 GLENAGIHEATYNSIMKCDVDIRKDLYGNVVMSGGTTMYPGIADRMQKEIQALAPSSMKVKIVAPPERKYSV 339
[Close]
BLAST of EY691917 vs. ExPASy Swiss-Prot
Match: ACTSB_TAKRU (Actin, alpha skeletal muscle B OS=Takifugu rubripes GN=acta1b PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 1.030e-22
Identity = 51/72 (70.83%), Postives = 59/72 (81.94%), Query Frame = 3 
Query:   12 GRVGAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIAERMSKEITALATRNMKIQVQDPPK*KYRI 227
            G   AGIHETTYNSIMKCD+DIRKDLY N VLSGG+TM+PGIA+RM KEITALA   MKI++  PP+ KY +
Sbjct:  270 GMESAGIHETTYNSIMKCDIDIRKDLYANNVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSV 341
[Close]
BLAST of EY691917 vs. ExPASy Swiss-Prot
Match: ACTN_STYCL (Actin, muscle OS=Styela clava GN=TB12 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 1.030e-22
Identity = 51/72 (70.83%), Postives = 59/72 (81.94%), Query Frame = 3 
Query:   12 GRVGAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIAERMSKEITALATRNMKIQVQDPPK*KYRI 227
            G   AGIHETTYNSIMKCD+DIRKDLY N VLSGG+TM+PGIA+RM KEITALA   MKI++  PP+ KY +
Sbjct:  271 GMESAGIHETTYNSIMKCDIDIRKDLYANNVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSV 342
[Close]
BLAST of EY691917 vs. ExPASy Swiss-Prot
Match: ACTM_STYCL (Actin, muscle OS=Styela clava PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 1.030e-22
Identity = 51/72 (70.83%), Postives = 59/72 (81.94%), Query Frame = 3 
Query:   12 GRVGAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIAERMSKEITALATRNMKIQVQDPPK*KYRI 227
            G   AGIHETTYNSIMKCD+DIRKDLY N VLSGG+TM+PGIA+RM KEITALA   MKI++  PP+ KY +
Sbjct:  271 GMESAGIHETTYNSIMKCDIDIRKDLYANNVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSV 342
[Close]
BLAST of EY691917 vs. ExPASy Swiss-Prot
Match: ACTM_MOLOC (Actin, larval muscle-type OS=Molgula oculata PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 1.030e-22
Identity = 51/72 (70.83%), Postives = 59/72 (81.94%), Query Frame = 3 
Query:   12 GRVGAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIAERMSKEITALATRNMKIQVQDPPK*KYRI 227
            G   AGIHETTYNSIMKCD+DIRKDLY N VLSGG+TM+PGIA+RM KEITALA   MKI++  PP+ KY +
Sbjct:  271 GMESAGIHETTYNSIMKCDIDIRKDLYANNVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSV 342
[Close]
BLAST of EY691917 vs. ExPASy Swiss-Prot
Match: ACTM_CIOSA (Actin, muscle OS=Ciona savignyi PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 1.030e-22
Identity = 51/72 (70.83%), Postives = 59/72 (81.94%), Query Frame = 3 
Query:   12 GRVGAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIAERMSKEITALATRNMKIQVQDPPK*KYRI 227
            G   AGIHETTYNSIMKCD+DIRKDLY N VLSGG+TM+PGIA+RM KEITALA   MKI++  PP+ KY +
Sbjct:  271 GMESAGIHETTYNSIMKCDIDIRKDLYANNVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSV 342
[Close]
BLAST of EY691917 vs. ExPASy Swiss-Prot
Match: ACTH_RAT (Actin, gamma-enteric smooth muscle OS=Rattus norvegicus GN=Actg2 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 1.030e-22
Identity = 51/72 (70.83%), Postives = 59/72 (81.94%), Query Frame = 3 
Query:   12 GRVGAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIAERMSKEITALATRNMKIQVQDPPK*KYRI 227
            G   AGIHETTYNSIMKCD+DIRKDLY N VLSGG+TM+PGIA+RM KEITALA   MKI++  PP+ KY +
Sbjct:  269 GMESAGIHETTYNSIMKCDIDIRKDLYANNVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSV 340
[Close]
BLAST of EY691917 vs. ExPASy Swiss-Prot
Match: ACTH_MOUSE (Actin, gamma-enteric smooth muscle OS=Mus musculus GN=Actg2 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 1.030e-22
Identity = 51/72 (70.83%), Postives = 59/72 (81.94%), Query Frame = 3 
Query:   12 GRVGAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIAERMSKEITALATRNMKIQVQDPPK*KYRI 227
            G   AGIHETTYNSIMKCD+DIRKDLY N VLSGG+TM+PGIA+RM KEITALA   MKI++  PP+ KY +
Sbjct:  269 GMESAGIHETTYNSIMKCDIDIRKDLYANNVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSV 340
[Close]
BLAST of EY691917 vs. ExPASy Swiss-Prot
Match: ACTH_HUMAN (Actin, gamma-enteric smooth muscle OS=Homo sapiens GN=ACTG2 PE=1 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 1.030e-22
Identity = 51/72 (70.83%), Postives = 59/72 (81.94%), Query Frame = 3 
Query:   12 GRVGAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIAERMSKEITALATRNMKIQVQDPPK*KYRI 227
            G   AGIHETTYNSIMKCD+DIRKDLY N VLSGG+TM+PGIA+RM KEITALA   MKI++  PP+ KY +
Sbjct:  269 GMESAGIHETTYNSIMKCDIDIRKDLYANNVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSV 340
The following BLAST results are available for this feature:
BLAST of EY691917 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 344
Match NameE-valueIdentityDescription
ACT2_LUMTE7.889e-2372.22Actin-2 OS=Lumbricus terrestris GN=ACT2 PE=2 SV=1[more]
ACT_SCHPO1.030e-2268.06Actin OS=Schizosaccharomyces pombe GN=act1 PE=1 SV... [more]
ACTSB_TAKRU1.030e-2270.83Actin, alpha skeletal muscle B OS=Takifugu rubripe... [more]
ACTN_STYCL1.030e-2270.83Actin, muscle OS=Styela clava GN=TB12 PE=2 SV=1[more]
ACTM_STYCL1.030e-2270.83Actin, muscle OS=Styela clava PE=2 SV=1[more]
ACTM_MOLOC1.030e-2270.83Actin, larval muscle-type OS=Molgula oculata PE=3 ... [more]
ACTM_CIOSA1.030e-2270.83Actin, muscle OS=Ciona savignyi PE=2 SV=1[more]
ACTH_RAT1.030e-2270.83Actin, gamma-enteric smooth muscle OS=Rattus norve... [more]
ACTH_MOUSE1.030e-2270.83Actin, gamma-enteric smooth muscle OS=Mus musculus... [more]
ACTH_HUMAN1.030e-2270.83Actin, gamma-enteric smooth muscle OS=Homo sapiens... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-102-B12-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY691917 ID=EY691917; Name=EY691917; organism=Citrus sinensis; type=EST; length=862bp
CCCGCGTCCGCGGACGCGTGGGTGCTGGTATTCATGAGACTACCTACAAC
TCCATCATGAAGTGTGATGTGGATATTAGAAAGGATCTGTATGGTAACAT
TGTTCTCAGTGGGGGTTCAACTATGTTCCCTGGTATTGCGGAACGTATGA
GCAAGGAAATCACAGCGCTTGCAACAAGAAACATGAAGATCCAGGTCCAG
GATCCACCAAAATGAAAATACAGAATATCGAAATGAACGAACAAAACTTA
CGTCCACTCCGCCCTTGACACCCGAAGCCCGAACCAAACAAGAAAGCAAA
AGAAAACAGACGCCCAAGAGGGCGGACAAAAAGGGGAAAAACAAAGAGAA
AGACACACAACGACAACAGACAGCAGAACGAAAACAAAACAAAAAAAGCA
ACAAAAAACAGAAAAGAACAAAAGAAAAAAAGAGAAGAGAAAAAAAAGAA
AAAAAACAAGAAAAAAGACAAAACAAGAGAGAGAGACAAAAGAGCGACAC
CGAACAACGCACGAGACAGAACGCGACACCAAGACACAACAAGACGAAGG
AAAAGAGACAAAAACAGCCAAGCGCAGACCCCCAAAGAACCCACAACCAG
CCACCGTCACACCGAGAACGACAAACGGACACAACAAACAAAACAACAGC
AGAGAAAACAAGAAAGACAACAACCAACAAGGACAAAAACACAAGCAAGA
CAGAAAAGCCAGAACCACACCAAGAAACACACAAAACAAGAAAACAAAGA
AGAACAAAGCCGAAAACAGGAACCAAAGAAAGCACGACGCACAAGCGAAC
AAGAAAAAAGAAAAGACACCAACCAAGACAGAGAGAGCAACCCACACGAA
AGAAACAGCCAA
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