EY691908 | Citrus Genome Database

Overview


Name	EY691908
Unique Name	EY691908
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	951

Libraries


Library Name	Type
Sweet orange bark, greenhouse plant	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of EY691908 vs. ExPASy Swiss-Prot
Match: EFTU_SYNJB (Elongation factor Tu OS=Synechococcus sp. GN=tuf PE=3 SV=1)

HSP 1 Score: 247.669 bits (631), Expect = 1.611e-67
Identity = 119/157 (75.80%), Postives = 138/157 (87.90%), Query Frame = 3

Query:   12 PQRQTDLPFLLAVEDVFSITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPG 482
            P+R  D PFL+AVEDVFSITGRGTVATGR+ERG IKVGETV+LVGL+ETR+ TVTG+EMFQKTLDE +AGDNVG+LLRG+QK +++RGMVLAKP TITPHT F + VYVLKKEEGGRH+PFFAGYRPQFY+RTTDVTG +SS   D   + +MVMPG
Sbjct:  213 PERDVDKPFLMAVEDVFSITGRGTVATGRIERGRIKVGETVELVGLRETRSTTVTGLEMFQKTLDEGIAGDNVGVLLRGIQKNEVERGMVLAKPKTITPHTNFESEVYVLKKEEGGRHTPFFAGYRPQFYVRTTDVTGTISSFTADDGSQPEMVMPG 369

HSP 2 Score: 30.8018 bits (68), Expect = 1.611e-67
Identity = 13/22 (59.09%), Postives = 18/22 (81.82%), Query Frame = 1

Query:  508 ELIMPMACEQGMKFALQERRKT 573
            ELI P+A EQGM+FA++E  +T
Sbjct:  377 ELIQPIAIEQGMRFAIREGGRT 398

[Close]

BLAST of EY691908 vs. ExPASy Swiss-Prot
Match: EFTU_OLTVI (Elongation factor Tu, chloroplastic OS=Oltmannsiellopsis viridis GN=tufA PE=3 SV=1)

HSP 1 Score: 248.44 bits (633), Expect = 3.572e-67
Identity = 119/157 (75.80%), Postives = 139/157 (88.54%), Query Frame = 3

Query:   12 PQRQTDLPFLLAVEDVFSITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPG 482
            P+R TD PFL+AVEDVFSITGRGTVATGRVERG +K+G+TV+LVGLK+T   TVTG+EMFQKTLDE++AGDNVG+LLRGVQK +IQRGMVLAKPG+I+PHTKF A VYVL KEEGGRH+PFF GYRPQFY+RTTDVTG++ S + D    S+MVMPG
Sbjct:  214 PERDTDKPFLMAVEDVFSITGRGTVATGRVERGVVKIGDTVELVGLKDTTETTVTGLEMFQKTLDESVAGDNVGILLRGVQKENIQRGMVLAKPGSISPHTKFEAQVYVLTKEEGGRHTPFFPGYRPQFYVRTTDVTGKIESFVADDGSASQMVMPG 370

HSP 2 Score: 28.8758 bits (63), Expect = 3.572e-67
Identity = 13/24 (54.17%), Postives = 19/24 (79.17%), Query Frame = 1

Query:  502 LWELIMPMACEQGMKFALQERRKT 573
            L ELI P+A E+GM+FA++E  +T
Sbjct:  376 LVELINPIAVEKGMRFAIREGGRT 399

[Close]

BLAST of EY691908 vs. ExPASy Swiss-Prot
Match: EFTU_SYNJA (Elongation factor Tu OS=Synechococcus sp. (strain JA-3-3Ab) GN=tuf PE=3 SV=1)

HSP 1 Score: 246.514 bits (628), Expect = 3.573e-67
Identity = 118/157 (75.16%), Postives = 139/157 (88.54%), Query Frame = 3

Query:   12 PQRQTDLPFLLAVEDVFSITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPG 482
            P+R  D PFL+AVEDVFSITGRGTVATGR+ERG IKVGETV+LVGL+ETR+ TVTG+EMFQKTLDE +AGDNVG+LLRG+QK +++RGMVLAKP TITPHT+F + VYVLKKEEGGRH+PFFAGYRPQFY+RTTDVTG ++S   D   + +MVMPG
Sbjct:  213 PERDVDKPFLMAVEDVFSITGRGTVATGRIERGRIKVGETVELVGLRETRSTTVTGLEMFQKTLDEGIAGDNVGVLLRGIQKNEVERGMVLAKPKTITPHTQFESEVYVLKKEEGGRHTPFFAGYRPQFYVRTTDVTGTITSFTADDGSKPEMVMPG 369

HSP 2 Score: 30.8018 bits (68), Expect = 3.573e-67
Identity = 13/22 (59.09%), Postives = 18/22 (81.82%), Query Frame = 1

Query:  508 ELIMPMACEQGMKFALQERRKT 573
            ELI P+A EQGM+FA++E  +T
Sbjct:  377 ELIQPIAIEQGMRFAIREGGRT 398

[Close]

BLAST of EY691908 vs. ExPASy Swiss-Prot
Match: EFTU_ACAM1 (Elongation factor Tu OS=Acaryochloris marina (strain MBIC 11017) GN=tuf PE=3 SV=1)

HSP 1 Score: 246.128 bits (627), Expect = 7.922e-67
Identity = 117/157 (74.52%), Postives = 138/157 (87.90%), Query Frame = 3

Query:   12 PQRQTDLPFLLAVEDVFSITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPG 482
            P+R  D PFL+AVEDVFSITGRGTVATGR+ERG + VGETV+LVG+++TR+ TVTGVEMFQKTLDE MAGDNVGLLLRGVQK DI+RGMVLAKPG+ITPHT+F + VY+LKK+EGGRH+PFF GYRPQFY+RTTDVTG +S+   D    ++MVMPG
Sbjct:  213 PERDVDKPFLMAVEDVFSITGRGTVATGRIERGKVVVGETVELVGIRDTRSTTVTGVEMFQKTLDEGMAGDNVGLLLRGVQKEDIERGMVLAKPGSITPHTQFESEVYILKKDEGGRHTPFFPGYRPQFYVRTTDVTGTISAFTADDGSAAEMVMPG 369

HSP 2 Score: 30.0314 bits (66), Expect = 7.922e-67
Identity = 13/22 (59.09%), Postives = 18/22 (81.82%), Query Frame = 1

Query:  508 ELIMPMACEQGMKFALQERRKT 573
            ELI P+A EQGM+FA++E  +T
Sbjct:  377 ELINPIAIEQGMRFAIREGGRT 398

[Close]

BLAST of EY691908 vs. ExPASy Swiss-Prot
Match: EFTU_SYNPW (Elongation factor Tu OS=Synechococcus sp. (strain WH7803) GN=tuf PE=3 SV=1)

HSP 1 Score: 244.973 bits (624), Expect = 7.924e-67
Identity = 114/157 (72.61%), Postives = 137/157 (87.26%), Query Frame = 3

Query:   12 PQRQTDLPFLLAVEDVFSITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPG 482
            P+R+ D PFL+A+EDVFSITGRGTVATGR+ERG +KVGE +++VG+K+TR  TVTGVEMF+K LDE MAGDNVGLLLRG+QK DI+RGMVL KPG+ITPHTKF   VYVLKKEEGGRH+PFFAGYRPQFY+RTTDVTG++++   D   + +MVMPG
Sbjct:  203 PEREVDKPFLMAIEDVFSITGRGTVATGRIERGIVKVGEEIEIVGIKDTRKTTVTGVEMFRKLLDEGMAGDNVGLLLRGIQKEDIERGMVLVKPGSITPHTKFEGEVYVLKKEEGGRHTPFFAGYRPQFYIRTTDVTGQITAFTADDGSDVEMVMPG 359

HSP 2 Score: 31.187 bits (69), Expect = 7.924e-67
Identity = 15/40 (37.50%), Postives = 23/40 (57.50%), Query Frame = 2

Query:  488 RVKMVCGSLLCPWLVSRG*NLPSKKGEKLVGAGGFQSIIE 607
            R+KM  G L+CP  + +G     ++G + +GAG    IIE
Sbjct:  361 RIKMT-GELICPVAIEQGMRFAIREGGRTIGAGVVSKIIE 399

[Close]

BLAST of EY691908 vs. ExPASy Swiss-Prot
Match: EFTU_CHLVU (Elongation factor Tu, chloroplastic OS=Chlorella vulgaris GN=tufA PE=3 SV=1)

HSP 1 Score: 246.128 bits (627), Expect = 1.347e-66
Identity = 116/157 (73.89%), Postives = 140/157 (89.17%), Query Frame = 3

Query:   12 PQRQTDLPFLLAVEDVFSITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPG 482
            P+R+T+ PFL+AVEDVFSITGRGTVATGRVERG +K+G+TV+LVGL++T+  TVTG+EMFQKTLDE++AGDNVG+LLRGVQK DI+RGMVLAKPG+I PHTKF A VYVL KEEGGRH+PFF GYRPQFY+RTTDVTG++ S   D +  ++MVMPG
Sbjct:  213 PERETEKPFLMAVEDVFSITGRGTVATGRVERGCVKIGDTVELVGLRDTKTTTVTGLEMFQKTLDESVAGDNVGILLRGVQKIDIERGMVLAKPGSILPHTKFEAQVYVLNKEEGGRHTPFFPGYRPQFYVRTTDVTGKIESFRADDNTATQMVMPG 369

HSP 2 Score: 29.261 bits (64), Expect = 1.347e-66
Identity = 12/22 (54.55%), Postives = 18/22 (81.82%), Query Frame = 1

Query:  508 ELIMPMACEQGMKFALQERRKT 573
            ELI P+A E+GM+FA++E  +T
Sbjct:  377 ELIQPIAIEKGMRFAIREGGRT 398

[Close]

BLAST of EY691908 vs. ExPASy Swiss-Prot
Match: EFTU_SYNP2 (Elongation factor Tu OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=tuf PE=3 SV=1)

HSP 1 Score: 244.202 bits (622), Expect = 2.987e-66
Identity = 116/157 (73.89%), Postives = 136/157 (86.62%), Query Frame = 3

Query:   12 PQRQTDLPFLLAVEDVFSITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPG 482
            P+R  D PFL+AVEDVFSITGRGTVATGR+ERG +KVGET+++VG+++TR+ TVTGVEMFQKTLDE MAGDNVG+LLRGVQK DI+RGMVLAKPG+ITPHT F A VYVL KEEGGRH+PFF  YRPQFY+RTTDVTG +S+   D    ++MVMPG
Sbjct:  213 PERDVDKPFLMAVEDVFSITGRGTVATGRIERGRVKVGETIEIVGIRDTRSTTVTGVEMFQKTLDEGMAGDNVGVLLRGVQKDDIERGMVLAKPGSITPHTNFEAEVYVLTKEEGGRHTPFFPNYRPQFYVRTTDVTGTISAFTADDGSSAEMVMPG 369

HSP 2 Score: 30.0314 bits (66), Expect = 2.987e-66
Identity = 13/22 (59.09%), Postives = 18/22 (81.82%), Query Frame = 1

Query:  508 ELIMPMACEQGMKFALQERRKT 573
            ELI P+A EQGM+FA++E  +T
Sbjct:  377 ELINPIAIEQGMRFAIREGGRT 398

[Close]

BLAST of EY691908 vs. ExPASy Swiss-Prot
Match: EFTU_OSTTA (Elongation factor Tu, chloroplastic OS=Ostreococcus tauri GN=tufA PE=3 SV=1)

HSP 1 Score: 244.973 bits (624), Expect = 3.895e-66
Identity = 115/157 (73.25%), Postives = 141/157 (89.81%), Query Frame = 3

Query:   12 PQRQTDLPFLLAVEDVFSITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPG 482
            P R+TD  FL+AVEDVFSITGRGTVATGRVERGT+KVG +++++G  +TR  TVTG+EMFQKTL+E++AGDNVG+LLRG+QK DI+RGMVLA+PGTITPHTKF A VYVLKKEEGGRH+PFF GYRPQFY+RTTDVTG++ S ++D+ +E+ MVMPG
Sbjct:  213 PARETDKTFLMAVEDVFSITGRGTVATGRVERGTVKVGASIEIIGYVDTRVATVTGLEMFQKTLEESVAGDNVGVLLRGIQKEDIERGMVLAQPGTITPHTKFEAQVYVLKKEEGGRHTPFFPGYRPQFYVRTTDVTGKIESFISDEGDEATMVMPG 369

HSP 2 Score: 28.8758 bits (63), Expect = 3.895e-66
Identity = 12/22 (54.55%), Postives = 17/22 (77.27%), Query Frame = 1

Query:  508 ELIMPMACEQGMKFALQERRKT 573
            ELI P+A E GM+FA++E  +T
Sbjct:  377 ELIQPIAIENGMRFAIREGGRT 398

[Close]

BLAST of EY691908 vs. ExPASy Swiss-Prot
Match: EFTU_SYNSC (Elongation factor Tu OS=Synechococcus sp. (strain CC9605) GN=tuf PE=3 SV=1)

HSP 1 Score: 243.047 bits (619), Expect = 5.081e-66
Identity = 114/157 (72.61%), Postives = 136/157 (86.62%), Query Frame = 3

Query:   12 PQRQTDLPFLLAVEDVFSITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPG 482
            P+R+ D PFL+AVEDVFSITGRGTVATGR+ERG +KVGE +++VG+K+TR  TVTGVEMF+K LDE MAGDNVGLLLRG+QK DI+RGMVL KPG+ITPHTKF   VYVLKKEEGGRH+PFFAGYRPQFY+RTTDVTG++++   +     +MVMPG
Sbjct:  203 PEREVDKPFLMAVEDVFSITGRGTVATGRIERGIVKVGEEIEIVGIKDTRKTTVTGVEMFRKLLDEGMAGDNVGLLLRGIQKEDIERGMVLVKPGSITPHTKFEGQVYVLKKEEGGRHTPFFAGYRPQFYIRTTDVTGQITAFTAEDGSNVEMVMPG 359

HSP 2 Score: 30.4166 bits (67), Expect = 5.081e-66
Identity = 13/22 (59.09%), Postives = 18/22 (81.82%), Query Frame = 1

Query:  508 ELIMPMACEQGMKFALQERRKT 573
            ELI P+A EQGM+FA++E  +T
Sbjct:  367 ELICPVAIEQGMRFAIREGGRT 388

[Close]

BLAST of EY691908 vs. ExPASy Swiss-Prot
Match: EFTU_TRIEI (Elongation factor Tu OS=Trichodesmium erythraeum (strain IMS101) GN=tuf PE=3 SV=1)

HSP 1 Score: 244.202 bits (622), Expect = 6.624e-66
Identity = 120/157 (76.43%), Postives = 134/157 (85.35%), Query Frame = 3

Query:   12 PQRQTDLPFLLAVEDVFSITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPG 482
            P+R  D PFL+AVEDVFSITGRGTVATGR+ERG IKVGETV+LVG+K+TRN TVTGVEMFQK LDE MAGDNVGLLLRG+QK DIQRGMVLAK G+ITPH KF + VYVLKKEEGGRH+PFF  YRPQFY+RTTDVTG + S   D    ++MVMPG
Sbjct:  213 PERDVDKPFLMAVEDVFSITGRGTVATGRIERGKIKVGETVELVGIKDTRNSTVTGVEMFQKILDEGMAGDNVGLLLRGMQKDDIQRGMVLAKSGSITPHKKFESEVYVLKKEEGGRHTPFFPNYRPQFYIRTTDVTGAIESFTADDGSVAEMVMPG 369

HSP 2 Score: 28.8758 bits (63), Expect = 6.624e-66
Identity = 12/22 (54.55%), Postives = 18/22 (81.82%), Query Frame = 1

Query:  508 ELIMPMACEQGMKFALQERRKT 573
            +LI P+A EQGM+FA++E  +T
Sbjct:  377 QLINPVAIEQGMRFAIREGGRT 398

The following BLAST results are available for this feature:

BLAST of EY691908 vs. ExPASy Swiss-Prot

BLAST of EY691908 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500


Match Name	E-value	Identity	Description
EFTU_SYNJB	1.611e-67	75.80	Elongation factor Tu OS=Synechococcus sp. GN=tuf P...	[more]
EFTU_OLTVI	3.572e-67	75.80	Elongation factor Tu, chloroplastic OS=Oltmannsiel...	[more]
EFTU_SYNJA	3.573e-67	75.16	Elongation factor Tu OS=Synechococcus sp. (strain ...	[more]
EFTU_ACAM1	7.922e-67	74.52	Elongation factor Tu OS=Acaryochloris marina (stra...	[more]
EFTU_SYNPW	7.924e-67	72.61	Elongation factor Tu OS=Synechococcus sp. (strain ...	[more]
EFTU_CHLVU	1.347e-66	73.89	Elongation factor Tu, chloroplastic OS=Chlorella v...	[more]
EFTU_SYNP2	2.987e-66	73.89	Elongation factor Tu OS=Synechococcus sp. (strain ...	[more]
EFTU_OSTTA	3.895e-66	73.25	Elongation factor Tu, chloroplastic OS=Ostreococcu...	[more]
EFTU_SYNSC	5.081e-66	72.61	Elongation factor Tu OS=Synechococcus sp. (strain ...	[more]
EFTU_TRIEI	6.624e-66	76.43	Elongation factor Tu OS=Trichodesmium erythraeum (...	[more]

Pages

Properties


Property Name	Value
Genbank description	CS00-C2-003-102-B02-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>EY691908 ID=EY691908; Name=EY691908; organism=Citrus sinensis; type=EST; length=951bp
TACATTCCTATCCCCAAAGACAAACTGATTTGCCCTTTTTGTTAGCTGTT
GAAGATGTGTTTTCAATTACTGGTCGTGGTACTGTGGCCACTGGCCGTGT
TGAGAGAGGTACTATTAAGGTTGGAGAGACTGTTGATCTTGTGGGATTGA
AGGAAACTAGGAATTTCACTGTAACTGGGGTTGAAATGTTTCAAAAGACT
CTAGACGAGGCAATGGCTGGGGATAATGTCGGGTTGTTACTTAGAGGTGT
ACAAAAGGCTGATATTCAGAGAGGGATGGTGTTGGCCAAGCCCGGAACAA
TTACTCCCCATACTAAGTTCCTGGCCATTGTGTATGTGTTGAAGAAGGAA
GAAGGTGGTAGGCACTCACCTTTCTTTGCGGGTTACAGGCCTCAATTTTA
CATGAGGACCACTGATGTGACTGGAAGGGTGTCTTCTATTATGAACGACA
AGGACGAGGAGTCCAAGATGGTTATGCCTGGGCGACCCGTGTCAAGATGG
TTTGTGGGAGCTTATTATGCCCATGGCTTGTGAGCAGGGGATGAAATTTG
CCCTCCAAGAAAGGAGAAAAACTGGTTGGAGCTGGGGGTTTTCAGTCCAT
CATTGAATGAAAATATTAGGAACTTTTAGGGGCAGTGGAATTTTCTTTTT
CTTTTTTGAGCGGGGGTTAAAACTTCTAATTCTTTTAATTTTTTATGGGA
ATTATTTCCCCCTTCCTCGGAACTTTCCCAAACCCAAGGTCCATAAAAAT
TTGCGAGTTTTTGTTCCTTTTTTTAGATTTGAAACTCCATTTAAAATTCA
CATTTGGGAAAAATGGTATCCTAGAGGAAAATTTCATCAATAAACACCCA
CCCCTTTTTTCCCCCACCATGTGTGTCTCACCCCTTAAAAAAAAAAAAAA
AAAAAAATAAAAAAAATAACAGGGGGGGGGGGTGCCCCCCTCCTCCTTTT
A