EY691852

Overview
NameEY691852
Unique NameEY691852
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length984
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY691852 vs. ExPASy Swiss-Prot
Match: RL10_PYRKO (50S ribosomal protein L10e OS=Pyrococcus kodakaraensis GN=rpl10e PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.110e-18
Identity = 50/122 (40.98%), Postives = 68/122 (55.74%), Query Frame = 2
Query:   47 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKP 412
            MG RPA+  R +    Y +  + RG P PKI I+D+G       EF + V L + +   +   ALEA RI  N+Y+ K  G+  +H ++RV+PF VLR N M +   ADR   GMR  FGKP
Sbjct:    1 MGLRPAKIDRDVDKPAYTRREYIRGAPGPKITIFDMGNLSA---EFEYEVSLHAEQAMQIRQNALEAIRIQVNRYLQKNVGRSNYHFKIRVYPFQVLRENPMATGRKADRYGNGMRRPFGKP 119          
BLAST of EY691852 vs. ExPASy Swiss-Prot
Match: RL10_THESM (50S ribosomal protein L10e OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.450e-18
Identity = 50/122 (40.98%), Postives = 68/122 (55.74%), Query Frame = 2
Query:   47 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKP 412
            M  RPA+  R +    Y +  + RG P P+I I+D+G       +F F V L + E   +   ALEAAR   N+Y++K  G+  FH ++RV+PF VLR N M +   ADR   GMR  FGKP
Sbjct:    1 MALRPAKIDRYVDKPAYTRREYIRGAPGPRITIFDMG---NPAGDFEFEVSLHTAEPVQIRQNALEAARTQLNRYLSKNVGRSNFHYKIRVYPFQVLRENPMATGRKADRYGNGMRRPFGKP 119          
BLAST of EY691852 vs. ExPASy Swiss-Prot
Match: RL10_METPE (50S ribosomal protein L10e OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.450e-18
Identity = 51/121 (42.15%), Postives = 70/121 (57.85%), Query Frame = 2
Query:   47 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGK 409
            M R+P + YR +  K Y + ++  GVP  KI  +++G   +   EFP  + L   E   +   ALEAARIA N+ M    G+  FH ++R +P HVLR NK  + AGADR+  GMR AFGK
Sbjct:    1 MVRKPGKMYRNLAKKAYTRRKYMGGVPGSKIVQFEMGNLSQ---EFPVEISLEVLESCQIRHTALEAARIAINRKMMDQVGRANFHFKIRTYPHHVLRENKQATGAGADRVSEGMRMAFGK 118          
BLAST of EY691852 vs. ExPASy Swiss-Prot
Match: RL10_UNCMA (50S ribosomal protein L10e OS=Uncultured methanogenic archaeon RC-I GN=rpl10e PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.894e-18
Identity = 50/121 (41.32%), Postives = 69/121 (57.02%), Query Frame = 2
Query:   47 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGK 409
            M R+P R Y++     Y +  +  GVP  K+  +D+G      +E P  V LV  E   +  +ALEAARI+ N+Y+    GK  +  +VRV+P  VLR NK  + AGADR+  GMR AFGK
Sbjct:    1 MARKPGRMYKKFSGPAYTRREYMGGVPGVKVAQFDMGNL---TEELPIAVTLVVNETCQIRHDALEAARISANRYLLNDVGKTNYRFKVRVYPHQVLRENKQATGAGADRVSDGMRRAFGK 118          
BLAST of EY691852 vs. ExPASy Swiss-Prot
Match: RL10_METMJ (50S ribosomal protein L10e OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.894e-18
Identity = 51/121 (42.15%), Postives = 71/121 (58.68%), Query Frame = 2
Query:   47 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGK 409
            M R+PA+ YR +  K Y +  +  GVP  KI  +D+G      +++P  + +V  E   +   ALEAARI  N+ + K  G+  FHL++R  P HVLR NK  + AGADR+  GMR AFGK
Sbjct:    1 MVRKPAKMYRNLAKKAYTRREYMGGVPGSKIVQFDMGNL---TEDYPVELSIVVDETCQIRHTALEAARIGINRQLQKEVGRANFHLKIRTFPHHVLRENKQATGAGADRVSEGMRLAFGK 118          
BLAST of EY691852 vs. ExPASy Swiss-Prot
Match: RL10_METAC (50S ribosomal protein L10e OS=Methanosarcina acetivorans GN=rpl10e PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 2.473e-18
Identity = 47/121 (38.84%), Postives = 73/121 (60.33%), Query Frame = 2
Query:   47 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGK 409
            M R+P   YR ++ + + + ++  GVP  ++  YD+G K      FP  + L+  EK  +   ALEAARI  N+++    GK  F++++RV+P  V+R NK  + AGADR+ +GMR AFGK
Sbjct:    1 MVRKPGSMYRNVRQRSFTRRKYMGGVPGSQVIHYDMGDKAN--TSFPVKISLIVEEKCQIRHTALEAARITANRHLVADTGKMGFYMKLRVYPHEVIRENKQATGAGADRVSSGMRRAFGK 119          
BLAST of EY691852 vs. ExPASy Swiss-Prot
Match: RL10_SULAC (50S ribosomal protein L10e OS=Sulfolobus acidocaldarius GN=rpl10e PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 3.230e-18
Identity = 51/123 (41.46%), Postives = 73/123 (59.35%), Query Frame = 2
Query:   47 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAK-YAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKP 412
            M  RP RCYR+     Y +  +  G+P PKI  + +G       ++ + + L++ EK  +   ALEAAR+   KY++K  A +  F L V  +P HV+R NKM++ AGADRLQ GMR +FGKP
Sbjct:    1 MPLRPGRCYRKFSGPAYTRREYIPGIPMPKITKFVMGNVN---GDYDYELRLITTEKGQIRHNALEAARVIALKYLSKKLASEQNFALVVTKYPHHVIRENKMMAFAGADRLQDGMRLSFGKP 120          
BLAST of EY691852 vs. ExPASy Swiss-Prot
Match: RL10_PYRFU (50S ribosomal protein L10e OS=Pyrococcus furiosus GN=rpl10e PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 3.230e-18
Identity = 50/122 (40.98%), Postives = 67/122 (54.92%), Query Frame = 2
Query:   47 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKP 412
            M  RPA+  R +    Y +  + RG P PKI I+D+G       +F F V L + E   +   ALEAAR   N+Y+ K  G+  +H ++RV+PF VLR N M +   ADR   GMR  FGKP
Sbjct:    1 MALRPAKIDRYVDKPAYTRREYIRGAPGPKITIFDMG---NPAGDFEFEVSLHTAEPVQIRQNALEAARQQVNRYLQKNVGRSNYHFKIRVYPFQVLRENPMATGRKADRYGNGMRRPFGKP 119          
BLAST of EY691852 vs. ExPASy Swiss-Prot
Match: RL10_METST (50S ribosomal protein L10e OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 3.230e-18
Identity = 48/107 (44.86%), Postives = 68/107 (63.55%), Query Frame = 2
Query:   89 KPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGK 409
            +PY +  + R +P  KI  YD+G       EFP  V L   E  ++S  +LEAARIA N+Y+ +  GK  + L++R +P H++R N M + AGADR+Q+GMRGAFGK
Sbjct:    3 RPYTRKDYIRKIPASKIVQYDMGNLS---GEFPLEVTLAVKEHTHLSHNSLEAARIAANRYLQRTTGKLGYRLKIRTYPHHIVRENPMATGAGADRVQSGMRGAFGK 106          
BLAST of EY691852 vs. ExPASy Swiss-Prot
Match: RL10_PYRHO (50S ribosomal protein L10e OS=Pyrococcus horikoshii GN=rpl10e PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 4.219e-18
Identity = 50/122 (40.98%), Postives = 67/122 (54.92%), Query Frame = 2
Query:   47 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKP 412
            M  RPA+  R +    Y +  + RG P PKI I+D+G       +F F V L + E   +   ALEAAR   N+Y+ K  G+  +H ++RV+PF VLR N M +   ADR   GMR  FGKP
Sbjct:    1 MALRPAKIDRYVDKPAYTRREYIRGAPGPKITIFDMG---NPAGDFEFEVALHTAEPVQIRQNALEAARQQVNRYLQKNVGRSNYHFKIRVYPFQVLRENPMATGRKADRYGNGMRRPFGKP 119          
The following BLAST results are available for this feature:
BLAST of EY691852 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 91
Match NameE-valueIdentityDescription
RL10_PYRKO1.110e-1840.9850S ribosomal protein L10e OS=Pyrococcus kodakarae... [more]
RL10_THESM1.450e-1840.9850S ribosomal protein L10e OS=Thermococcus sibiric... [more]
RL10_METPE1.450e-1842.1550S ribosomal protein L10e OS=Methanosphaerula pal... [more]
RL10_UNCMA1.894e-1841.3250S ribosomal protein L10e OS=Uncultured methanoge... [more]
RL10_METMJ1.894e-1842.1550S ribosomal protein L10e OS=Methanoculleus maris... [more]
RL10_METAC2.473e-1838.8450S ribosomal protein L10e OS=Methanosarcina aceti... [more]
RL10_SULAC3.230e-1841.4650S ribosomal protein L10e OS=Sulfolobus acidocald... [more]
RL10_PYRFU3.230e-1840.9850S ribosomal protein L10e OS=Pyrococcus furiosus ... [more]
RL10_METST3.230e-1844.8650S ribosomal protein L10e OS=Methanosphaera stadt... [more]
RL10_PYRHO4.219e-1840.9850S ribosomal protein L10e OS=Pyrococcus horikoshi... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-027-D05-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY691852 ID=EY691852; Name=EY691852; organism=Citrus sinensis; type=EST; length=984bp
CCACGCGTCCGGAGAGAATAGCTGAGACCGAACACGAACGCTCGCCATGG
GAAGAAGACCGGCAAGGTGTTACCGCCAAATCAAGAACAAACCCTACCCA
AAGTCCCGCTTTTGCCGCGGTGTCCCCGATCCCAAGATCAGAATCTACGA
TGTCGGGATGAAGAAGAAAGGCGTCGACGAGTTCCCCTTCTGCGTTCACC
TCGTCAGTTGGGAGAAGGAGAACGTGTCGAGCGAGGCCTTGGAAGCTGCC
CGTATCGCTTGCAACAAGTACATGGCCAAGTACGCCGGCAAGGATGCTTT
CCATTTGCGAGTGAGGGTGCACCCCTTCCATGTTCTGCGTATTAACAAGA
TGCTTTCGTGTGCTGGGGCTGATAGGCTCCAGACTGGAATGAGGGGTGCT
TTTGGAAAGCCCCAAGGAACCTGTGGCTCGTGTTTGCTATCGGGCAGGTC
TTTGCTTTTCTGTCCGTTGCAAGGGATAGTAACAGCCCCCCATGCTCAGG
AGGGCCTTCGCCCTGGCTAACGTTCAGGTTTCTGAGGCGTCAAAGGATTA
TTGGTCACCAAGAAAAGGGGATTTACCCAGCATCTACCGAGGAGATAATT
CGGGAGTGGGAAGACAGATATAAAGGGATAGTTACATGAAGGGTTGTCAA
GGGTCACTTTCTCCGGATTAATGGTACAATTGGATGATCCTACCACCAGT
ACAATCTATCATTGGGAAATACAGGACAAGAGAATTATTGTAAATACAAC
TAATAAGTGAGGGAAGTGTCGGCGAGCTCGTGAATAAAAATCATACTACG
CTCATGTAATTAACGATGGTACGTGAAAGAGTGCACGCAAGAGGAATTAA
GATGTAAAATTAAAAGAGGGAAATTATAACGTTTAATTGAGAGATTCATA
TGGAATAACATTACCTATGAAGGCAGATAATCGAAGAAAAAAGGAACTGG
AATCTATTGAAGAAGTAATAACAACGGACAAATA
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