EY690166

Overview
NameEY690166
Unique NameEY690166
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length888
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY690166 vs. ExPASy Swiss-Prot
Match: KCS15_ARATH (3-ketoacyl-CoA synthase 15 OS=Arabidopsis thaliana GN=KCS15 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 5.215e-17
Identity = 42/90 (46.67%), Postives = 62/90 (68.89%), Query Frame = 3 
Query:   12 GNKKTMSLSNCLFRVGGSAVLLSNKAKDKRRAKYKLVHVVRTHKGADDNAFKCVYQEQDNAGKTGVSLSKDLMAIAGMALKANITTLGPL 281
            GN   +   NC FR+G +AV+LS++  D+ RAKY+L+ +VRTHKG +D ++K +   +D  GK G+ +S+D+M +   ALKANI TLG L
Sbjct:  261 GNDVALLPPNCFFRMGAAAVMLSSRRIDRWRAKYQLMQLVRTHKGMEDTSYKSIELREDRDGKQGLYVSRDVMEVGRHALKANIATLGRL 350
The following BLAST results are available for this feature:
BLAST of EY690166 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
KCS15_ARATH5.215e-1746.673-ketoacyl-CoA synthase 15 OS=Arabidopsis thaliana... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C2-003-058-C10-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY690166 ID=EY690166; Name=EY690166; organism=Citrus sinensis; type=EST; length=888bp
CCACGCGTCCGGGGAACAAGAAGACCATGTCGCTATCCAATTGTTTGTTT
AGAGTTGGGGGTTCCGCGGTTTTGCTATCAAATAAAGCCAAGGATAAGCG
CCGGGCTAAGTATAAGCTTGTTCATGTAGTGAGGACACATAAAGGAGCTG
ATGATAATGCATTTAAGTGTGTTTATCAAGAACAAGACAATGCTGGAAAA
ACTGGGGTGTCCTTGTCGAAAGATTTAATGGCTATTGCTGGTATGGCCCT
AAAGGCCAACATCACTACCTTAGGTCCCCTTGTTCTTCCTATAAGCGAGC
AACTTCTCTTCTTTGCAACTTTGGTTGCCAAGAAGTTTTCTAATGCCACA
GACAAGCCTTATATTCCTGATTTCAACCTCGCTTTTGATCATCTTTCGAT
ACATGATGGAGGGACAGCTGCGATTGACGAACTCGCAAAGAATTCGCACC
TTCTCCCACAGCACATACAGGCATCTACGATGACTACACATCAAACTGAC
ACCACATCCTACACCCCAAATTTAGAACGGACCCGCACTCAAGTGAACCA
AACAGGACAGAACCAAACACCCCCCCCAAACATCCCAACCAACCCACAAC
ACGAACACACCAAATAACAATACCCCCACCACTATCTCAAACACAACACA
AACAAAGCAGCACATACACCACCACCGGACAACTAAACCGACACAACACA
CAACGAACACCCCCCACCAGACACACAACACCCCAACCACCAACCGTCAC
CCCCCCAGCCTCTCCCTACACCCCCACCAGAACCAACCCCGACGACCGCC
GACGCCCCACCATCTCGAGAACCACGACACACAACTACAACAGCGGCCCC
AAACAAGCACACCACCACGCACCCAAACGCACCACACC
back to top