EY690154

Overview
NameEY690154
Unique NameEY690154
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length560
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY690154 vs. ExPASy Swiss-Prot
Match: RS6_HUMAN (40S ribosomal protein S6 OS=Homo sapiens GN=RPS6 PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.054e-18
Identity = 53/101 (52.48%), Postives = 63/101 (62.38%), Query Frame = 2
Query:   17 GPKRAS*IRKLFNLSKEDDVRKYVNTYRRTFTTKSGKKVSKAPKIQRLVTPLTLQRKRARISXXXXXXXXXXXXXXXXXXLLATRLKEQRERRSESLAKKR 319
            GPKRAS IRKLFNLSKEDDVR+YV   R+    +  K  +KAPKIQRLVTP  LQ KR RI+                  LLA R+KE +E+R E +AK+R
Sbjct:  134 GPKRASRIRKLFNLSKEDDVRQYV--VRKPLNKEGKKPRTKAPKIQRLVTPRVLQHKRRRIALKKQRTKKNKEEAAEYAKLLAKRMKEAKEKRQEQIAKRR 232          
BLAST of EY690154 vs. ExPASy Swiss-Prot
Match: RS6_CHICK (40S ribosomal protein S6 OS=Gallus gallus GN=RPS6 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.054e-18
Identity = 53/101 (52.48%), Postives = 63/101 (62.38%), Query Frame = 2
Query:   17 GPKRAS*IRKLFNLSKEDDVRKYVNTYRRTFTTKSGKKVSKAPKIQRLVTPLTLQRKRARISXXXXXXXXXXXXXXXXXXLLATRLKEQRERRSESLAKKR 319
            GPKRAS IRKLFNLSKEDDVR+YV   R+    +  K  +KAPKIQRLVTP  LQ KR RI+                  LLA R+KE +E+R E +AK+R
Sbjct:  134 GPKRASRIRKLFNLSKEDDVRQYV--VRKPLNKEGKKPRTKAPKIQRLVTPRVLQHKRRRIALKKQRTQKNKEEAADYAKLLAKRMKEAKEKRQEQIAKRR 232          
BLAST of EY690154 vs. ExPASy Swiss-Prot
Match: RS6_BOVIN (40S ribosomal protein S6 OS=Bos taurus GN=RPS6 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 3.503e-18
Identity = 53/101 (52.48%), Postives = 62/101 (61.39%), Query Frame = 2
Query:   17 GPKRAS*IRKLFNLSKEDDVRKYVNTYRRTFTTKSGKKVSKAPKIQRLVTPLTLQRKRARISXXXXXXXXXXXXXXXXXXLLATRLKEQRERRSESLAKKR 319
            GPKRAS IRKLFNLSKEDDVR+YV   R+       K  +KAPKIQRLVTP  LQ KR RI+                  LLA R+KE +E+R E +AK+R
Sbjct:  134 GPKRASRIRKLFNLSKEDDVRQYV--VRKPLNKDGKKPRTKAPKIQRLVTPRVLQHKRRRIALKKQRTKKNKEEAAEYAKLLAKRMKEAKEKRQEQIAKRR 232          
BLAST of EY690154 vs. ExPASy Swiss-Prot
Match: RS6_XENLA (40S ribosomal protein S6 OS=Xenopus laevis GN=rps6 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 5.975e-18
Identity = 53/101 (52.48%), Postives = 62/101 (61.39%), Query Frame = 2
Query:   17 GPKRAS*IRKLFNLSKEDDVRKYVNTYRRTFTTKSGKKVSKAPKIQRLVTPLTLQRKRARISXXXXXXXXXXXXXXXXXXLLATRLKEQRERRSESLAKKR 319
            GPKRAS IRKLFNLSKEDDVR+YV   R+    +  K  +KAPKIQRLVTP  LQ KR RI+                  LLA R KE +E+R E +AK+R
Sbjct:  134 GPKRASRIRKLFNLSKEDDVRQYV--VRKPLAKEGKKPRTKAPKIQRLVTPRVLQHKRRRIALKKQRTQKNKEEASEYAKLLAKRSKEAKEKRQEQIAKRR 232          
BLAST of EY690154 vs. ExPASy Swiss-Prot
Match: RS6_SPOFR (40S ribosomal protein S6 OS=Spodoptera frugiperda GN=RpS6 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.331e-17
Identity = 54/106 (50.94%), Postives = 65/106 (61.32%), Query Frame = 2
Query:   17 GPKRAS*IRKLFNLSKEDDVRKYVNTYRRTFTTKSGKKVS----KAPKIQRLVTPLTLQRKRARISXXXXXXXXXXXXXXXXXXLLATRLKEQRERRSESLAKKRS 322
            GPKRAS IRKLFNLSKEDDVR+YV   +R    K GK+ +    KAPKIQRLVTP+ LQR+R R++                  LLA R KE + RR E L ++RS
Sbjct:  134 GPKRASKIRKLFNLSKEDDVRRYV--VKRLLPAKEGKENAKPRYKAPKIQRLVTPVVLQRRRHRLALKKKRLAKRKQSENDYAKLLAQRKKESKVRRQEELKRRRS 237          
BLAST of EY690154 vs. ExPASy Swiss-Prot
Match: RS6_MANSE (40S ribosomal protein S6 OS=Manduca sexta GN=RpS6 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.127e-16
Identity = 52/106 (49.06%), Postives = 64/106 (60.38%), Query Frame = 2
Query:   17 GPKRAS*IRKLFNLSKEDDVRKYVNTYRRTFTTKSGKKVS----KAPKIQRLVTPLTLQRKRARISXXXXXXXXXXXXXXXXXXLLATRLKEQRERRSESLAKKRS 322
            GPKRAS IRKLFNLSKEDDVR+YV   +     K GK+ +    KAPKIQRLVTP+ LQR+R R++                  LLA R KE + RR E + ++RS
Sbjct:  134 GPKRASKIRKLFNLSKEDDVRRYV--VKALLPAKEGKENAKPRYKAPKIQRLVTPVVLQRRRHRLALKKKRLAKRKSAEADYAKLLAQRKKESKVRRQEEIKRRRS 237          
BLAST of EY690154 vs. ExPASy Swiss-Prot
Match: RS6_GLOMM (40S ribosomal protein S6 OS=Glossina morsitans morsitans GN=RpS6 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.922e-16
Identity = 54/102 (52.94%), Postives = 62/102 (60.78%), Query Frame = 2
Query:   17 GPKRAS*IRKLFNLSKEDDVRKYVNTYRRTFTTKSGKK-VSKAPKIQRLVTPLTLQRKRARISXXXXXXXXXXXXXXXXXXLLATRLKEQRERRSESLAKKR 319
            GPKRAS IRKL+NLSK DDVR YV   RR    K  KK +SKAPKIQRL+TP+ LQRKR RI+                  LLA R KE + +R E  AK+R
Sbjct:  134 GPKRASKIRKLYNLSKVDDVRPYV--IRRPLPAKDNKKAISKAPKIQRLITPVVLQRKRRRIALKKKRQAASKEAAADYAKLLAQRKKESKAKREE--AKRR 231          
BLAST of EY690154 vs. ExPASy Swiss-Prot
Match: RS6_DROME (40S ribosomal protein S6 OS=Drosophila melanogaster GN=RpS6 PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 9.539e-16
Identity = 52/102 (50.98%), Postives = 61/102 (59.80%), Query Frame = 2
Query:   17 GPKRAS*IRKLFNLSKEDDVRKYVNTYRRTFTTKSGKK-VSKAPKIQRLVTPLTLQRKRARISXXXXXXXXXXXXXXXXXXLLATRLKEQRERRSESLAKKR 319
            GPKRAS IRKL+NLSKEDDVR++V   RR    K  KK  SKAPKIQRL+TP+ LQRK  RI+                  LL  R KE + +R E  AK+R
Sbjct:  134 GPKRASKIRKLYNLSKEDDVRRFV--VRRPLPAKDNKKATSKAPKIQRLITPVVLQRKHRRIALKKKRQIASKEASADYAKLLVQRKKESKAKREE--AKRR 231          
BLAST of EY690154 vs. ExPASy Swiss-Prot
Match: RS6_AEDAL (40S ribosomal protein S6 OS=Aedes albopictus GN=RpS6 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 4.734e-15
Identity = 48/102 (47.06%), Postives = 62/102 (60.78%), Query Frame = 2
Query:   17 GPKRAS*IRKLFNLSKEDDVRKYVNTYRRTFTTKSGKKV-SKAPKIQRLVTPLTLQRKRARISXXXXXXXXXXXXXXXXXXLLATRLKEQRERRSESLAKKR 319
            GPKRAS IRKL+NL+KEDDVR+YV   +R    K GKK  +KAPKIQRL+TP+ LQRKR R++                  +L  R +++R RR   L+  R
Sbjct:  134 GPKRASNIRKLYNLTKEDDVRQYV--VKRPLPEKDGKKPRTKAPKIQRLITPVVLQRKRHRLAIKKRRVESRKEAEAEYMKILHLRRRQERIRRRSRLSSMR 233          
BLAST of EY690154 vs. ExPASy Swiss-Prot
Match: RS6_AEDAE (40S ribosomal protein S6 OS=Aedes aegypti GN=RpS6 PE=2 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 8.075e-15
Identity = 47/102 (46.08%), Postives = 62/102 (60.78%), Query Frame = 2
Query:   17 GPKRAS*IRKLFNLSKEDDVRKYVNTYRRTFTTKSGKKV-SKAPKIQRLVTPLTLQRKRARISXXXXXXXXXXXXXXXXXXLLATRLKEQRERRSESLAKKR 319
            GPKRAS IRKL+NL+KEDDVR++V   +R    K GKK  +KAPKIQRL+TP+ LQRKR R++                  +L  R +++R RR   L+  R
Sbjct:  134 GPKRASNIRKLYNLTKEDDVRQFV--VKRPLPEKDGKKARTKAPKIQRLITPVVLQRKRHRLAIKKRRVESRKEAEAEYMKILHLRRRQERIRRRSRLSSMR 233          
The following BLAST results are available for this feature:
BLAST of EY690154 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
RS6_HUMAN2.054e-1852.4840S ribosomal protein S6 OS=Homo sapiens GN=RPS6 P... [more]
RS6_CHICK2.054e-1852.4840S ribosomal protein S6 OS=Gallus gallus GN=RPS6 ... [more]
RS6_BOVIN3.503e-1852.4840S ribosomal protein S6 OS=Bos taurus GN=RPS6 PE=... [more]
RS6_XENLA5.975e-1852.4840S ribosomal protein S6 OS=Xenopus laevis GN=rps6... [more]
RS6_SPOFR1.331e-1750.9440S ribosomal protein S6 OS=Spodoptera frugiperda ... [more]
RS6_MANSE1.127e-1649.0640S ribosomal protein S6 OS=Manduca sexta GN=RpS6 ... [more]
RS6_GLOMM1.922e-1652.9440S ribosomal protein S6 OS=Glossina morsitans mor... [more]
RS6_DROME9.539e-1650.9840S ribosomal protein S6 OS=Drosophila melanogaste... [more]
RS6_AEDAL4.734e-1547.0640S ribosomal protein S6 OS=Aedes albopictus GN=Rp... [more]
RS6_AEDAE8.075e-1546.0840S ribosomal protein S6 OS=Aedes aegypti GN=RpS6 ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-058-B05-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY690154 ID=EY690154; Name=EY690154; organism=Citrus sinensis; type=EST; length=560bp
CCACGCGTCCGTGAGAGGTCCCAAGAGAGCCTCTTAGATCAGGAAGTTGT
TCAACCTTTCCAAGGAGGATGATGTTAGGAAGTACGTTAACACCTATCGT
CGGACCTTCACAACAAAATCTGGTAAGAAGGTTAGCAAGGCACCGAAAAT
TCAGAGGTTGGTAACTCCTTTGACTCTGCAAAGGAAGCGTGCAAGAATTT
CAGAAAAGAAGCAGAGAATTGCCAAGGCCAAGGCTGAAGCAGCGGAATAC
CAGAAGCTCCTTGCTACCAGGTTGAAGGAGCAGCGTGAACGCCGCAGTGA
GAGTTTGGCAAAGAAGAGGTCTAGGCTCTCTGCTGCCTCAAAGCCATCTA
TTGCAGCTTAGATTCTTTGCTATAGTTGTTCTTTGGTCGGTTATGTATTG
TCCTGCTGAATACTTTCTAATAGGTTGAGGAAATTTCGAGTGTTTTTGAC
TTAATATCCCATGGAATGTGATACAATAACCTTCATAGACACTTTTCCGA
TTTTGTTTACTTAAATTGGTTGATGCTCCCGCTATTCTTCTTTCCCCCAA
CACCCCCACA
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