EY690154

Overview
NameEY690154
Unique NameEY690154
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length560
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY690154 vs. ExPASy Swiss-Prot
Match: RS6_YARLI (40S ribosomal protein S6 OS=Yarrowia lipolytica GN=RPS6 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.799e-14
Identity = 48/104 (46.15%), Postives = 59/104 (56.73%), Query Frame = 2
Query:   17 GPKRAS*IRKLFNLSKEDDVRKYVNTYRRTFTTKSGKKVSKAPKIQRLVTPLTLQRKRARISXXXXXXXXXXXXXXXXXXLLATRLKEQRERRSESLAKKRSRL 328
            GPKRA+ IRKLF LSKEDDVR+YV   RR  TTKSGK  +KAPKIQRL+TP  L  K                       LLA R+ E++  ++E   ++ S L
Sbjct:  134 GPKRANNIRKLFALSKEDDVRQYV--IRREVTTKSGKTYTKAPKIQRLITPRRLAHKAQLREKKVKAIQASKDAAAEYAQLLAKRVAEKKSEKAEEKKRRASSL 235          
BLAST of EY690154 vs. ExPASy Swiss-Prot
Match: RS6A_SCHPO (40S ribosomal protein S6-A OS=Schizosaccharomyces pombe GN=rps6a PE=1 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 1.799e-14
Identity = 49/105 (46.67%), Postives = 61/105 (58.10%), Query Frame = 2
Query:   17 GPKRAS*IRKLFNLSKEDDVRKYVNTYRRTFTTKSGKK-VSKAPKIQRLVTPLTLQRKRARISXXXXXXXXXXXXXXXXXXLLATRLKEQRERRSESLAKKRSRL 328
            GPKRAS IR+ FNLSKEDDVR++V   R     K GKK  +KAPKIQRLVTP TLQ KR R +                  L+A R+ E +++R    A++ S L
Sbjct:  134 GPKRASKIRRFFNLSKEDDVRQFV-IRREVVPKKEGKKPYTKAPKIQRLVTPRTLQHKRHRFALKRRQAEKNREEAAEFAQLMAKRVAEAKQKREVVKARRASSL 237          
BLAST of EY690154 vs. ExPASy Swiss-Prot
Match: RS6_DEBHA (40S ribosomal protein S6 OS=Debaryomyces hansenii GN=RPS6 PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.350e-14
Identity = 49/104 (47.12%), Postives = 60/104 (57.69%), Query Frame = 2
Query:   17 GPKRAS*IRKLFNLSKEDDVRKYVNTYRRTFTTKSGKKVSKAPKIQRLVTPLTLQRKRARISXXXXXXXXXXXXXXXXXXLLATRLKEQRERRSESLAKKRSRL 328
            GPKRA+ IRK F L+KEDDVR++V    R    K  KK +KAPKIQRLVTP TLQRKRA  +                  LLA RL E++  R+E   ++ S L
Sbjct:  134 GPKRANNIRKFFGLTKEDDVRQFVV---RREVVKGDKKYTKAPKIQRLVTPQTLQRKRALKAQKVKNAQQQRDAAAEYAQLLAQRLHERKAERAEIKKRRASSL 234          
BLAST of EY690154 vs. ExPASy Swiss-Prot
Match: RS6_BRAFL (40S ribosomal protein S6 OS=Branchiostoma floridae GN=RPS6 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 5.234e-14
Identity = 52/103 (50.49%), Postives = 58/103 (56.31%), Query Frame = 2
Query:   17 GPKRAS*IRKLFNLSKEDDVRKYVNTYRRTFTTKSGKKVS-KAPKIQRLVTPLTLQRKRARISXXXXXXXXXXXXXXXXXXLLATRLKEQRERRSESLAKKRS 322
            GPKRA  IRKLFNL+KEDDVR+YV   RR    K GKK   K PKIQRL+TP  LQRKR   +                  LLA R KE+RE      AK+RS
Sbjct:  134 GPKRAGRIRKLFNLNKEDDVRQYV--VRRPLPQKEGKKQKFKTPKIQRLITPQRLQRKRHMRAVKRRRYAKQREEEATYAKLLAKRKKEEREAH----AKRRS 230          
BLAST of EY690154 vs. ExPASy Swiss-Prot
Match: RS6B_SCHPO (40S ribosomal protein S6-B OS=Schizosaccharomyces pombe GN=rps6b PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 6.836e-14
Identity = 47/105 (44.76%), Postives = 61/105 (58.10%), Query Frame = 2
Query:   17 GPKRAS*IRKLFNLSKEDDVRKYVNTYRRTFTTKSGKK-VSKAPKIQRLVTPLTLQRKRARISXXXXXXXXXXXXXXXXXXLLATRLKEQRERRSESLAKKRSRL 328
            GPKRAS IR+ FNLSKEDDVR++V   R     K GKK  +KAPKIQRLVTP TLQ KR R +                  L+A R+ E ++++    A++ S +
Sbjct:  134 GPKRASKIRRFFNLSKEDDVRQFV-IRREVVPKKEGKKPYTKAPKIQRLVTPRTLQHKRHRFALKRRQAEKNREEAAEFAQLMAKRVAEAKQKKEVVKARRASSM 237          
BLAST of EY690154 vs. ExPASy Swiss-Prot
Match: RS6_KLULA (40S ribosomal protein S6 OS=Kluyveromyces lactis GN=RPS6 PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 8.928e-14
Identity = 48/104 (46.15%), Postives = 58/104 (55.77%), Query Frame = 2
Query:   17 GPKRAS*IRKLFNLSKEDDVRKYVNTYRRTFTTKSGKKVSKAPKIQRLVTPLTLQRKRARISXXXXXXXXXXXXXXXXXXLLATRLKEQRERRSESLAKKRSRL 328
            GPKRA+ IRK F L+KEDDVR YV    R   TK  K  +KAPKIQRLVTP  LQRKR + S                  LLA RL E++  ++E   ++ S L
Sbjct:  134 GPKRANNIRKFFGLTKEDDVRDYV---IRREVTKGDKSYTKAPKIQRLVTPQRLQRKRQQKSLKIKNAQAQREAAAEYAQLLAKRLSERKAEKAEVRKRRASSL 234          
BLAST of EY690154 vs. ExPASy Swiss-Prot
Match: RS6_YEAST (40S ribosomal protein S6 OS=Saccharomyces cerevisiae GN=RPS6A PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 5.787e-13
Identity = 47/104 (45.19%), Postives = 58/104 (55.77%), Query Frame = 2
Query:   17 GPKRAS*IRKLFNLSKEDDVRKYVNTYRRTFTTKSGKKVSKAPKIQRLVTPLTLQRKRARISXXXXXXXXXXXXXXXXXXLLATRLKEQRERRSESLAKKRSRL 328
            GPKRA+ IRK F LSKEDDVR +V    R   TK  K  +KAPKIQRLVTP  LQRKR + +                  LLA RL E++  ++E   ++ S L
Sbjct:  134 GPKRANNIRKFFGLSKEDDVRDFV---IRREVTKGEKTYTKAPKIQRLVTPQRLQRKRHQRALKVRNAQAQREAAAEYAQLLAKRLSERKAEKAEIRKRRASSL 234          
BLAST of EY690154 vs. ExPASy Swiss-Prot
Match: RS6_CANGA (40S ribosomal protein S6 OS=Candida glabrata GN=RPS6A PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 7.558e-13
Identity = 46/104 (44.23%), Postives = 59/104 (56.73%), Query Frame = 2
Query:   17 GPKRAS*IRKLFNLSKEDDVRKYVNTYRRTFTTKSGKKVSKAPKIQRLVTPLTLQRKRARISXXXXXXXXXXXXXXXXXXLLATRLKEQRERRSESLAKKRSRL 328
            GPKRA+ IRK F L+KEDDVR +V    R   TK  K  +KAPKIQRLVTP  LQRKR + +                  LLA RL E++  ++E+  ++ S L
Sbjct:  134 GPKRANHIRKFFGLTKEDDVRDFV---IRREVTKGEKTYTKAPKIQRLVTPQRLQRKRYQRNLKVRNAQAQREAAAEYAQLLAKRLAERKAEKAETRKRRASSL 234          
BLAST of EY690154 vs. ExPASy Swiss-Prot
Match: RS6_KLUMA (40S ribosomal protein S6 OS=Kluyveromyces marxianus GN=RPS6 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.289e-12
Identity = 49/101 (48.51%), Postives = 57/101 (56.44%), Query Frame = 2
Query:   17 GPKRAS*IRKLFNLSKEDDVRKYVNTYRRTFTTKSGKKVSKAPKIQRLVTPLTLQRKRARISXXXXXXXXXXXXXXXXXXLLATRLKEQ----RERRSESL 307
            GPKRA+ IRK F L+KEDDVR YV    R   TK  K  +KAPKIQRLVTP  LQRKR + +                  LLA RL E+    R+RR+ SL
Sbjct:  134 GPKRANNIRKFFGLTKEDDVRDYV---IRREVTKGEKTYTKAPKIQRLVTPQRLQRKRQQKALKIKNAQAQREAAAEYAQLLAKRLAERKAEVRKRRASSL 231          
BLAST of EY690154 vs. ExPASy Swiss-Prot
Match: RS6_ASHGO (40S ribosomal protein S6 OS=Ashbya gossypii GN=RPS6 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 6.398e-12
Identity = 44/104 (42.31%), Postives = 57/104 (54.81%), Query Frame = 2
Query:   17 GPKRAS*IRKLFNLSKEDDVRKYVNTYRRTFTTKSGKKVSKAPKIQRLVTPLTLQRKRARISXXXXXXXXXXXXXXXXXXLLATRLKEQRERRSESLAKKRSRL 328
            GPKRA+ IRK F L+K+DDVR +V    R    K  K  +KAPKIQRLVTP  LQRKR + +                  LLA RL E++  ++E   ++ S L
Sbjct:  134 GPKRANNIRKFFGLTKDDDVRDFVI---RREVVKGDKTYTKAPKIQRLVTPQRLQRKRHQRALKVRNAQAQREAAAEYAQLLAKRLTEKKAEKAEERKRRASSL 234          
The following BLAST results are available for this feature:
BLAST of EY690154 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
RS6_YARLI1.799e-1446.1540S ribosomal protein S6 OS=Yarrowia lipolytica GN... [more]
RS6A_SCHPO1.799e-1446.6740S ribosomal protein S6-A OS=Schizosaccharomyces ... [more]
RS6_DEBHA2.350e-1447.1240S ribosomal protein S6 OS=Debaryomyces hansenii ... [more]
RS6_BRAFL5.234e-1450.4940S ribosomal protein S6 OS=Branchiostoma floridae... [more]
RS6B_SCHPO6.836e-1444.7640S ribosomal protein S6-B OS=Schizosaccharomyces ... [more]
RS6_KLULA8.928e-1446.1540S ribosomal protein S6 OS=Kluyveromyces lactis G... [more]
RS6_YEAST5.787e-1345.1940S ribosomal protein S6 OS=Saccharomyces cerevisi... [more]
RS6_CANGA7.558e-1344.2340S ribosomal protein S6 OS=Candida glabrata GN=RP... [more]
RS6_KLUMA1.289e-1248.5140S ribosomal protein S6 OS=Kluyveromyces marxianu... [more]
RS6_ASHGO6.398e-1242.3140S ribosomal protein S6 OS=Ashbya gossypii GN=RPS... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-058-B05-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY690154 ID=EY690154; Name=EY690154; organism=Citrus sinensis; type=EST; length=560bp
CCACGCGTCCGTGAGAGGTCCCAAGAGAGCCTCTTAGATCAGGAAGTTGT
TCAACCTTTCCAAGGAGGATGATGTTAGGAAGTACGTTAACACCTATCGT
CGGACCTTCACAACAAAATCTGGTAAGAAGGTTAGCAAGGCACCGAAAAT
TCAGAGGTTGGTAACTCCTTTGACTCTGCAAAGGAAGCGTGCAAGAATTT
CAGAAAAGAAGCAGAGAATTGCCAAGGCCAAGGCTGAAGCAGCGGAATAC
CAGAAGCTCCTTGCTACCAGGTTGAAGGAGCAGCGTGAACGCCGCAGTGA
GAGTTTGGCAAAGAAGAGGTCTAGGCTCTCTGCTGCCTCAAAGCCATCTA
TTGCAGCTTAGATTCTTTGCTATAGTTGTTCTTTGGTCGGTTATGTATTG
TCCTGCTGAATACTTTCTAATAGGTTGAGGAAATTTCGAGTGTTTTTGAC
TTAATATCCCATGGAATGTGATACAATAACCTTCATAGACACTTTTCCGA
TTTTGTTTACTTAAATTGGTTGATGCTCCCGCTATTCTTCTTTCCCCCAA
CACCCCCACA
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