EY690154

Overview
NameEY690154
Unique NameEY690154
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length560
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY690154 vs. ExPASy Swiss-Prot
Match: RS6_CAEEL (40S ribosomal protein S6 OS=Caenorhabditis elegans GN=rps-6 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.175e-11
Identity = 43/102 (42.16%), Postives = 57/102 (55.88%), Query Frame = 2 
Query:   17 GPKRAS*IRKLFNLSKEDDVRKYVNTYRRTFTTKSGKKVSKAPKIQRLVTPLTLQRKRARISXXXXXXXXXXXXXXXXXXLLATRLKEQRERRSESLAKKRS 322
            GPKRAS IRKLFNL+K DDV KYV T+ +TF     K +  APKIQRL+TP  + RK+  +                   LLA   KE+ + +   +A++RS
Sbjct:  134 GPKRASKIRKLFNLTKHDDVTKYVITHDKTFPDGVTKTI--APKIQRLITPARIARKKYLLRQKRNQKIKMRDDAAAYHKLLAKYSKEEHDAK---IARRRS 230
The following BLAST results are available for this feature:
BLAST of EY690154 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
RS6_CAEEL3.175e-1142.1640S ribosomal protein S6 OS=Caenorhabditis elegans... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-058-B05-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY690154 ID=EY690154; Name=EY690154; organism=Citrus sinensis; type=EST; length=560bp
CCACGCGTCCGTGAGAGGTCCCAAGAGAGCCTCTTAGATCAGGAAGTTGT
TCAACCTTTCCAAGGAGGATGATGTTAGGAAGTACGTTAACACCTATCGT
CGGACCTTCACAACAAAATCTGGTAAGAAGGTTAGCAAGGCACCGAAAAT
TCAGAGGTTGGTAACTCCTTTGACTCTGCAAAGGAAGCGTGCAAGAATTT
CAGAAAAGAAGCAGAGAATTGCCAAGGCCAAGGCTGAAGCAGCGGAATAC
CAGAAGCTCCTTGCTACCAGGTTGAAGGAGCAGCGTGAACGCCGCAGTGA
GAGTTTGGCAAAGAAGAGGTCTAGGCTCTCTGCTGCCTCAAAGCCATCTA
TTGCAGCTTAGATTCTTTGCTATAGTTGTTCTTTGGTCGGTTATGTATTG
TCCTGCTGAATACTTTCTAATAGGTTGAGGAAATTTCGAGTGTTTTTGAC
TTAATATCCCATGGAATGTGATACAATAACCTTCATAGACACTTTTCCGA
TTTTGTTTACTTAAATTGGTTGATGCTCCCGCTATTCTTCTTTCCCCCAA
CACCCCCACA
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