EY690149

Overview
NameEY690149
Unique NameEY690149
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length887
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY690149_ssr574 microsatellite EY690149_ssr574:574..583. BLAST: Citrus ESTs to Prunus persica proteins V1
EY690149_ssr747 microsatellite EY690149_ssr747:747..756. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY690149 vs. ExPASy Swiss-Prot
Match: SSG1_ORYGL (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Oryza glaberrima GN=WAXY PE=1 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.728e-28
Identity = 70/126 (55.56%), Postives = 80/126 (63.49%), Query Frame = 2
Query:    2 KTMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDP--VNAAAQTHHPHDHLSPPIGTPPSETTERN 373
            K  EK L+ +E  YP K R V KFN PLAH+I+AGAD + +PSRFEPCGLIQL  MRYGT    ASTGGLVDTV EG TGF MG  SV+C+ V+P  V   A T          +GTP  E   RN
Sbjct:  440 KKFEKLLKSMEEKYPGKVRAVVKFNAPLAHLIMAGADVLAVPSRFEPCGLIQLQGMRYGTPCACASTGGLVDTVIEGKTGFHMGRLSVNCKVVEPSDVKKVAAT---LKRAIKVVGTPAYEEMVRN 562          
BLAST of EY690149 vs. ExPASy Swiss-Prot
Match: SSG1_HORVU (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Hordeum vulgare GN=WAXY PE=1 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 7.260e-27
Identity = 57/97 (58.76%), Postives = 69/97 (71.13%), Query Frame = 2
Query:    2 KTMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVN 292
            K  EK L+ +E  +P K R V +FN PLAH ++AGAD + + SRFEPCGLIQL  MRYGT  + ASTGGLVDT+ EG TGF MG  SVDC  V+P +
Sbjct:  434 KKFEKLLKSMEEKFPGKVRAVVRFNAPLAHQMMAGADLLAVTSRFEPCGLIQLQGMRYGTPCVCASTGGLVDTIVEGKTGFHMGRLSVDCNVVEPAD 530          
BLAST of EY690149 vs. ExPASy Swiss-Prot
Match: SSG1_WHEAT (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Triticum aestivum GN=WAXY PE=1 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 6.146e-26
Identity = 56/97 (57.73%), Postives = 68/97 (70.10%), Query Frame = 2
Query:    2 KTMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVN 292
            K  E+ L+ +E  +P K R V +FN PLAH ++AGAD + + SRFEPCGLIQL  MRYGT    ASTGGLVDT+ EG TGF MG  SVDC  V+P +
Sbjct:  446 KKFERLLKSVEEKFPTKVRAVVRFNAPLAHQMMAGADVLAVTSRFEPCGLIQLQGMRYGTPCACASTGGLVDTIVEGKTGFHMGRLSVDCNVVEPAD 542          
BLAST of EY690149 vs. ExPASy Swiss-Prot
Match: SSG1_SORBI (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Sorghum bicolor GN=WAXY PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 6.146e-26
Identity = 58/97 (59.79%), Postives = 66/97 (68.04%), Query Frame = 2
Query:    2 KTMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVN 292
            K  E+ L   E  YP+K R V KFN  LAH I+AGAD + + SRFEPCGLIQL  MRYGT    ASTGGLVDT+ EG TGF MG  SVDC  V+P +
Sbjct:  439 KKFERMLMSAEEKYPDKVRAVVKFNAALAHHIMAGADLLAVTSRFEPCGLIQLQGMRYGTPCACASTGGLVDTIIEGKTGFHMGRLSVDCNVVEPAD 535          
BLAST of EY690149 vs. ExPASy Swiss-Prot
Match: SSG1_MAIZE (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Zea mays GN=WAXY PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 2.335e-25
Identity = 63/124 (50.81%), Postives = 73/124 (58.87%), Query Frame = 2
Query:    2 KTMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVNAAAQTHHPHDHLSPPIGTPPSETTERN 373
            K  E+ L   E  +P K R V KFN  LAH I+AGAD + + SRFEPCGLIQL  MRYGT    ASTGGLVDT+ EG TGF MG  SVDC  V+P +   +           +GTP  E   RN
Sbjct:  436 KKFERMLMSAEEKFPGKVRAVVKFNAALAHHIMAGADVLAVTSRFEPCGLIQLQGMRYGTPCACASTGGLVDTIIEGKTGFHMGRLSVDCNVVEPAD-VKKVATTLQRAIKVVGTPAYEEMVRN 558          
BLAST of EY690149 vs. ExPASy Swiss-Prot
Match: SSY1_ARATH (Soluble starch synthase, chloroplastic/amyloplastic OS=Arabidopsis thaliana GN=At5g24300 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.611e-18
Identity = 42/72 (58.33%), Postives = 53/72 (73.61%), Query Frame = 2
Query:   11 EKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVE 226
            E  +  +E  Y +K RG   FN+P++H I AG D +L+PSRFEPCGL QL+AMRYGT+P+V  TGGL DTVE
Sbjct:  501 ESWMRSMEETYRDKFRGWVGFNVPISHRITAGCDILLMPSRFEPCGLNQLYAMRYGTIPVVHGTGGLRDTVE 572          
BLAST of EY690149 vs. ExPASy Swiss-Prot
Match: GLGA_THEYD (Glycogen synthase OS=Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87) GN=glgA PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.611e-18
Identity = 45/84 (53.57%), Postives = 56/84 (66.67%), Query Frame = 2
Query:   11 EKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFS 262
            E ++ +L+  YP K      F+  LAH I AGAD +L+PSR+EPCGL QL AMRYGT+PI   TGGL DTVE+  TGF    +S
Sbjct:  354 EHKIRELQNSYPSKVFAFIGFDEALAHKIYAGADSLLVPSRYEPCGLSQLIAMRYGTIPICRKTGGLSDTVEDKVTGFLFSEYS 437          
BLAST of EY690149 vs. ExPASy Swiss-Prot
Match: SSY1_SOLTU (Soluble starch synthase 1, chloroplastic/amyloplastic OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 4.717e-18
Identity = 58/138 (42.03%), Postives = 74/138 (53.62%), Query Frame = 2
Query:    2 KTMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVNAAAQTHHPHDHLSPPIGTPPSETTERNSDRHGNLRGGGGEE 415
            K  E  +   E L+ +K R    FN+P++H I AG D +L+PSRFEPCGL QL+AMRYGT+PIV STGGL DTV++     Q G          P+ +        D L   IGT     TE  S   G +R G G +
Sbjct:  487 KQYEDWMRHTENLFKDKFRAWVGFNVPVSHRITAGCDILLMPSRFEPCGLNQLYAMRYGTIPIVHSTGGLRDTVKDFNPYAQEGIGEGTGWTFSPLTSEKLL----DTLKLAIGT----YTEHKSSWEGLMRRGMGRD 616          
BLAST of EY690149 vs. ExPASy Swiss-Prot
Match: GLGA_XANOR (Glycogen synthase OS=Xanthomonas oryzae pv. oryzae GN=glgA PE=3 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 5.215e-17
Identity = 42/87 (48.28%), Postives = 59/87 (67.82%), Query Frame = 2
Query:    8 MEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVD 268
            +E+Q+ +L   YP +      F   LA  + AGADF+L+PSRFEPCGL Q++A R+G +PI  +TGGL+DTV++G TGF     SV+
Sbjct:  365 IERQVAELTRRYPGQVGAFIGFEEGLARRMFAGADFLLMPSRFEPCGLSQMYAQRFGCLPIAHATGGLIDTVDDGVTGFLFQHASVE 451          
BLAST of EY690149 vs. ExPASy Swiss-Prot
Match: GLGA_XANOP (Glycogen synthase OS=Xanthomonas oryzae pv. oryzae (strain PXO99A) GN=glgA PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 5.215e-17
Identity = 42/87 (48.28%), Postives = 59/87 (67.82%), Query Frame = 2
Query:    8 MEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVD 268
            +E+Q+ +L   YP +      F   LA  + AGADF+L+PSRFEPCGL Q++A R+G +PI  +TGGL+DTV++G TGF     SV+
Sbjct:  365 IERQVAELTRRYPGQVGAFIGFEEGLARRMFAGADFLLMPSRFEPCGLSQMYAQRFGCLPIAHATGGLIDTVDDGVTGFLFQHASVE 451          
The following BLAST results are available for this feature:
BLAST of EY690149 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 343
Match NameE-valueIdentityDescription
SSG1_ORYGL1.728e-2855.56Granule-bound starch synthase 1, chloroplastic/amy... [more]
SSG1_HORVU7.260e-2758.76Granule-bound starch synthase 1, chloroplastic/amy... [more]
SSG1_WHEAT6.146e-2657.73Granule-bound starch synthase 1, chloroplastic/amy... [more]
SSG1_SORBI6.146e-2659.79Granule-bound starch synthase 1, chloroplastic/amy... [more]
SSG1_MAIZE2.335e-2550.81Granule-bound starch synthase 1, chloroplastic/amy... [more]
SSY1_ARATH3.611e-1858.33Soluble starch synthase, chloroplastic/amyloplasti... [more]
GLGA_THEYD3.611e-1853.57Glycogen synthase OS=Thermodesulfovibrio yellowsto... [more]
SSY1_SOLTU4.717e-1842.03Soluble starch synthase 1, chloroplastic/amyloplas... [more]
GLGA_XANOR5.215e-1748.28Glycogen synthase OS=Xanthomonas oryzae pv. oryzae... [more]
GLGA_XANOP5.215e-1748.28Glycogen synthase OS=Xanthomonas oryzae pv. oryzae... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-058-A10-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY690149 ID=EY690149; Name=EY690149; organism=Citrus sinensis; type=EST; length=887bp
AAAAACAATGGAGAAGCAGCTTGAACAGTTGGAGATACTGTACCCTGAGA
AAGCCAGAGGAGTAGCGAAATTCAATATTCCTCTGGCGCATATGATAATA
GCAGGAGCTGATTTTATTTTGATTCCAAGCAGATTTGAACCTTGTGGTCT
CATTCAATTACATGCCATGCGTTATGGAACCGTACCTATCGTGGCTTCCA
CTGGTGGTTTGGTTGACACTGTGGAAGAAGGCTTTACAGGATTCCAGATG
GGAAGCTTCAGTGTTGACTGTGAGGCTGTGGATCCCGTAAATGCGGCTGC
ACAGACCCACCACCCGCACGACCACCTCTCGCCACCAATCGGCACTCCGC
CCTCNGAAACAACTGAACGAAACTCGGATAGACACGGGAACCTTCGCGGA
GGGGGGGGGGAGGAAGCACACCGGACAGGACCCCCCCACGCGCCGCACGA
CCGAACGGGCCCCACACGCGACCGCCCCAAACCACGCACCCCCAGCGCGC
CGCCACGGCCGCGGCCCGCGCCCGACACACGCCCCCACACCACACCAACA
CACGCCACCCCAACAACCGGCGCCACACACACAACCACGCACAAGCACAC
ACAGAGCAGAAACCACGAACGACGTACCAACGAACCGACAACGAAAAGGC
CACCGAGACACGCGCCCGATAAAACCAACCAGGCCAAGACACAAAGCAGA
AGCGACACCCAGCGCGCACCCCGGACCGCGACCACAGAAACCCCCGCACA
CACACACCCCCGACCGACGCAGAACGCCGCGACGGCCGTGAGGACGAGCC
AACAAAACACCGAGCCACAACACCGACCGCACGACCCCAGACAAACCCCT
CCACGAGCGCCAGCCGACAAGACGCGGGACGACCACA
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