EY690149

Overview
NameEY690149
Unique NameEY690149
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length887
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY690149_ssr574 microsatellite EY690149_ssr574:574..583. BLAST: Citrus ESTs to Prunus persica proteins V1
EY690149_ssr747 microsatellite EY690149_ssr747:747..756. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY690149 vs. ExPASy Swiss-Prot
Match: GLGA_XANOM (Glycogen synthase OS=Xanthomonas oryzae pv. oryzae (strain MAFF 311018) GN=glgA PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 5.215e-17
Identity = 42/87 (48.28%), Postives = 59/87 (67.82%), Query Frame = 2
Query:    8 MEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVD 268
            +E+Q+ +L   YP +      F   LA  + AGADF+L+PSRFEPCGL Q++A R+G +PI  +TGGL+DTV++G TGF     SV+
Sbjct:  365 IERQVAELTRRYPGQVGAFIGFEEGLARRMFAGADFLLMPSRFEPCGLSQMYAQRFGCLPIAHATGGLIDTVDDGVTGFLFQHASVE 451          
BLAST of EY690149 vs. ExPASy Swiss-Prot
Match: GLGA_XANC5 (Glycogen synthase OS=Xanthomonas campestris pv. vesicatoria (strain 85-10) GN=glgA PE=3 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 5.215e-17
Identity = 42/87 (48.28%), Postives = 59/87 (67.82%), Query Frame = 2
Query:    8 MEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVD 268
            +E+Q+ +L   YP +      F   LA  + AGADF+L+PSRFEPCGL Q++A R+G +PI  +TGGL+DTV++G TGF     SV+
Sbjct:  365 IERQVAELTRRYPGQVGAFIGFEEGLARRMFAGADFLLMPSRFEPCGLSQMYAQRFGCLPIAHATGGLIDTVDDGVTGFLFQHASVE 451          
BLAST of EY690149 vs. ExPASy Swiss-Prot
Match: GLGA_XANAC (Glycogen synthase OS=Xanthomonas axonopodis pv. citri GN=glgA PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 6.811e-17
Identity = 42/87 (48.28%), Postives = 59/87 (67.82%), Query Frame = 2
Query:    8 MEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVD 268
            +E+Q+ +L   YP +      F   LA  + AGADF+L+PSRFEPCGL Q++A R+G +PI  +TGGL+DTV++G TGF     SV+
Sbjct:  330 IEQQVAELTRRYPGQVGAFIGFEEGLARRMFAGADFLLMPSRFEPCGLSQMYAQRFGCLPIAHATGGLIDTVDDGVTGFLFQHASVE 416          
BLAST of EY690149 vs. ExPASy Swiss-Prot
Match: SSY1_WHEAT (Starch synthase 1, chloroplastic/amyloplastic OS=Triticum aestivum GN=WSSI-2 PE=2 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 8.895e-17
Identity = 46/95 (48.42%), Postives = 59/95 (62.11%), Query Frame = 2
Query:   11 EKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVE---------EGFTGFQMGSFSVD 268
            E  +   E  Y +K RG   F++P++H I AG D +L+PSRFEPCGL QL+AM+YGTVP+V  TGGL DTVE         E  TG+     +VD
Sbjct:  497 EGWMRSTESSYKDKFRGWVGFSVPVSHRITAGCDILLMPSRFEPCGLNQLYAMQYGTVPVVHGTGGLRDTVETFNPFGAKGEEGTGWAFSPLTVD 591          
BLAST of EY690149 vs. ExPASy Swiss-Prot
Match: GLGA_MYXXD (Glycogen synthase OS=Myxococcus xanthus (strain DK 1622) GN=glgA PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 8.895e-17
Identity = 42/78 (53.85%), Postives = 58/78 (74.36%), Query Frame = 2
Query:    8 MEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTG 241
            +E+ L  L+  YP++      F+  L+H++ AGADF L+PSR+EPCGL Q++++RYGTVPIV +TGGLVDTVE G  G
Sbjct:  339 LEEGLLALQSRYPKQVGVHIGFDPGLSHLVEAGADFFLMPSRYEPCGLNQMYSLRYGTVPIVRATGGLVDTVEGGLDG 416          
BLAST of EY690149 vs. ExPASy Swiss-Prot
Match: SSY2_SOLTU (Granule-bound starch synthase 2, chloroplastic/amyloplastic OS=Solanum tuberosum GN=SS2 PE=1 SV=3)

HSP 1 Score: 87.0409 bits (214), Expect = 1.517e-16
Identity = 39/75 (52.00%), Postives = 55/75 (73.33%), Query Frame = 2
Query:    2 KTMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVE 226
            + +E+ L Q E  + +K RG   F++  +H I AGAD +L+PSRFEPCGL QL+AM+YGT+P+V + GGL DTV+
Sbjct:  621 RDLEQMLRQFECQHNDKIRGWVGFSVKTSHRITAGADILLMPSRFEPCGLNQLYAMKYGTIPVVHAVGGLRDTVQ 695          
BLAST of EY690149 vs. ExPASy Swiss-Prot
Match: GLGA_XANCP (Glycogen synthase OS=Xanthomonas campestris pv. campestris GN=glgA PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.517e-16
Identity = 40/79 (50.63%), Postives = 56/79 (70.89%), Query Frame = 2
Query:    8 MEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGF 244
            +E+Q+ +L   YP +      F   LA  + AGADF+L+PSRFEPCGL Q++A R+G +PI  +TGGL+DTV++G TGF
Sbjct:  330 IEQQVAELTRRYPGQVGAFIGFEEGLARRMFAGADFLLMPSRFEPCGLSQMYAQRFGCLPIAHATGGLIDTVDDGVTGF 408          
BLAST of EY690149 vs. ExPASy Swiss-Prot
Match: GLGA_XANC8 (Glycogen synthase OS=Xanthomonas campestris pv. campestris (strain 8004) GN=glgA PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.517e-16
Identity = 40/79 (50.63%), Postives = 56/79 (70.89%), Query Frame = 2
Query:    8 MEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGF 244
            +E+Q+ +L   YP +      F   LA  + AGADF+L+PSRFEPCGL Q++A R+G +PI  +TGGL+DTV++G TGF
Sbjct:  330 IEQQVAELTRRYPGQVGAFIGFEEGLARRMFAGADFLLMPSRFEPCGLSQMYAQRFGCLPIAHATGGLIDTVDDGVTGF 408          
BLAST of EY690149 vs. ExPASy Swiss-Prot
Match: SSY21_ORYSJ (Soluble starch synthase 2-1, chloroplastic/amyloplastic OS=Oryza sativa subsp. japonica GN=SSII-1 PE=2 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 2.588e-16
Identity = 42/73 (57.53%), Postives = 54/73 (73.97%), Query Frame = 2
Query:    8 MEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVE 226
            +E  L +LE  + ++ RG   F+I LAH + AGAD +L+PSRFEPCGL QL+AM YGTVP+V + GGL DTVE
Sbjct:  605 LEDTLRRLESQHYDRVRGWVGFSIRLAHRMTAGADILLMPSRFEPCGLNQLYAMMYGTVPVVHAVGGLRDTVE 677          
BLAST of EY690149 vs. ExPASy Swiss-Prot
Match: SSY1_ORYSJ (Soluble starch synthase 1, chloroplastic/amyloplastic OS=Oryza sativa subsp. japonica GN=Os06g0160700 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.588e-16
Identity = 41/72 (56.94%), Postives = 52/72 (72.22%), Query Frame = 2
Query:   11 EKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVE 226
            E  +   E  Y +K RG   F++P++H I AG D +L+PSRFEPCGL QL+AM+YGTVP+V  TGGL DTVE
Sbjct:  491 EGWMRSTESGYRDKFRGWVGFSVPVSHRITAGCDILLMPSRFEPCGLNQLYAMQYGTVPVVHGTGGLRDTVE 562          
The following BLAST results are available for this feature:
BLAST of EY690149 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 343
Match NameE-valueIdentityDescription
GLGA_XANOM5.215e-1748.28Glycogen synthase OS=Xanthomonas oryzae pv. oryzae... [more]
GLGA_XANC55.215e-1748.28Glycogen synthase OS=Xanthomonas campestris pv. ve... [more]
GLGA_XANAC6.811e-1748.28Glycogen synthase OS=Xanthomonas axonopodis pv. ci... [more]
SSY1_WHEAT8.895e-1748.42Starch synthase 1, chloroplastic/amyloplastic OS=T... [more]
GLGA_MYXXD8.895e-1753.85Glycogen synthase OS=Myxococcus xanthus (strain DK... [more]
SSY2_SOLTU1.517e-1652.00Granule-bound starch synthase 2, chloroplastic/amy... [more]
GLGA_XANCP1.517e-1650.63Glycogen synthase OS=Xanthomonas campestris pv. ca... [more]
GLGA_XANC81.517e-1650.63Glycogen synthase OS=Xanthomonas campestris pv. ca... [more]
SSY21_ORYSJ2.588e-1657.53Soluble starch synthase 2-1, chloroplastic/amylopl... [more]
SSY1_ORYSJ2.588e-1656.94Soluble starch synthase 1, chloroplastic/amyloplas... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-058-A10-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY690149 ID=EY690149; Name=EY690149; organism=Citrus sinensis; type=EST; length=887bp
AAAAACAATGGAGAAGCAGCTTGAACAGTTGGAGATACTGTACCCTGAGA
AAGCCAGAGGAGTAGCGAAATTCAATATTCCTCTGGCGCATATGATAATA
GCAGGAGCTGATTTTATTTTGATTCCAAGCAGATTTGAACCTTGTGGTCT
CATTCAATTACATGCCATGCGTTATGGAACCGTACCTATCGTGGCTTCCA
CTGGTGGTTTGGTTGACACTGTGGAAGAAGGCTTTACAGGATTCCAGATG
GGAAGCTTCAGTGTTGACTGTGAGGCTGTGGATCCCGTAAATGCGGCTGC
ACAGACCCACCACCCGCACGACCACCTCTCGCCACCAATCGGCACTCCGC
CCTCNGAAACAACTGAACGAAACTCGGATAGACACGGGAACCTTCGCGGA
GGGGGGGGGGAGGAAGCACACCGGACAGGACCCCCCCACGCGCCGCACGA
CCGAACGGGCCCCACACGCGACCGCCCCAAACCACGCACCCCCAGCGCGC
CGCCACGGCCGCGGCCCGCGCCCGACACACGCCCCCACACCACACCAACA
CACGCCACCCCAACAACCGGCGCCACACACACAACCACGCACAAGCACAC
ACAGAGCAGAAACCACGAACGACGTACCAACGAACCGACAACGAAAAGGC
CACCGAGACACGCGCCCGATAAAACCAACCAGGCCAAGACACAAAGCAGA
AGCGACACCCAGCGCGCACCCCGGACCGCGACCACAGAAACCCCCGCACA
CACACACCCCCGACCGACGCAGAACGCCGCGACGGCCGTGAGGACGAGCC
AACAAAACACCGAGCCACAACACCGACCGCACGACCCCAGACAAACCCCT
CCACGAGCGCCAGCCGACAAGACGCGGGACGACCACA
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