EY690149

Overview
NameEY690149
Unique NameEY690149
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length887
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY690149 vs. ExPASy Swiss-Prot
Match: SSY23_ORYSJ (Soluble starch synthase 2-3, chloroplastic/amyloplastic OS=Oryza sativa subsp. japonica GN=SSII-3 PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.861e-15
Identity = 38/74 (51.35%), Postives = 53/74 (71.62%), Query Frame = 2
Query:    2 KTMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV 223
            + +E  L++ E  +  K RG   F++ +AH I AGAD +++PSRFEPCGL QL+AM YGTVP+V + GGL DT+
Sbjct:  664 RDLEVMLQRFEAQHNSKVRGWVGFSVKMAHRITAGADVLVMPSRFEPCGLNQLYAMAYGTVPVVHAVGGLRDTM 737          
BLAST of EY690149 vs. ExPASy Swiss-Prot
Match: GLGA_ANADE (Glycogen synthase OS=Anaeromyxobacter dehalogenans (strain 2CP-C) GN=glgA PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.861e-15
Identity = 40/72 (55.56%), Postives = 52/72 (72.22%), Query Frame = 2
Query:   41 YPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGS 256
            +P++      F+  LAH I AGAD  L+PSRFEPCGL Q++++RYGTVP+V S GGL DTVE+ F GF  G+
Sbjct:  346 HPDRVAARIGFDEGLAHRIEAGADLFLMPSRFEPCGLNQMYSLRYGTVPVVRSVGGLADTVED-FDGFARGT 416          
BLAST of EY690149 vs. ExPASy Swiss-Prot
Match: GLGA_BACST (Glycogen synthase OS=Bacillus stearothermophilus GN=glgA PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.737e-15
Identity = 41/72 (56.94%), Postives = 48/72 (66.67%), Query Frame = 2
Query:   11 EKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVE 226
            E+   Q+   YP K      F+ PLAH I AGAD  LIPS FEPCGL Q+ A+RYGT+PIV  TGGL DTV+
Sbjct:  336 EQFFSQMAAAYPGKVGVYIGFHEPLAHQIYAGADLFLIPSLFEPCGLSQMIALRYGTIPIVRETGGLNDTVQ 407          
BLAST of EY690149 vs. ExPASy Swiss-Prot
Match: GLGA_ANOFW (Glycogen synthase OS=Anoxybacillus flavithermus (strain DSM 21510 / WK1) GN=glgA PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.737e-15
Identity = 45/91 (49.45%), Postives = 58/91 (63.74%), Query Frame = 2
Query:   11 EKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVE-------EGFTGFQMGSFS 262
            E+  + + + YP++ R    F+  LAH I AGAD  L+PS+FEPCGL Q+ AMRYG VPIV  TGGL DTV+       EG TGF   +F+
Sbjct:  336 EQFFQDMTMTYPDRVRVYIGFSEQLAHQIYAGADMFLMPSKFEPCGLGQMIAMRYGAVPIVRETGGLNDTVQSFNELTKEG-TGFTFKNFN 425          
BLAST of EY690149 vs. ExPASy Swiss-Prot
Match: GLGA_FERNB (Glycogen synthase OS=Fervidobacterium nodosum (strain ATCC 35602 / DSM 5306 / Rt17-B1) GN=glgA PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.881e-15
Identity = 44/89 (49.44%), Postives = 55/89 (61.80%), Query Frame = 2
Query:   11 EKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEE-----------GFTGF 244
            E   ++L   YPEK     KF+I LA  I AG D  L+PSR+EPCGL Q++++RYGT+PIV  TGGL DTV+E           GF GF
Sbjct:  341 ENMFKKLGEKYPEKYSINLKFDIVLAQKIYAGCDMFLMPSRYEPCGLGQMYSLRYGTIPIVRYTGGLADTVKEYNPETKEGNGFGFEGF 429          
BLAST of EY690149 vs. ExPASy Swiss-Prot
Match: GLGA_PSEU2 (Glycogen synthase OS=Pseudomonas syringae pv. syringae (strain B728a) GN=glgA PE=3 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 6.375e-15
Identity = 36/86 (41.86%), Postives = 57/86 (66.28%), Query Frame = 2
Query:   11 EKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVD 268
            E+ + +L   +P +      FN   A  + AG+DF+L+PSR+EPCGL Q++A R+G++P+  +TGGL DT+E+G TGF     +V+
Sbjct:  342 EEAMRELAARFPGRVGVRIGFNETDARRMFAGSDFLLMPSRYEPCGLSQMYAQRFGSLPVARNTGGLADTIEDGVTGFLFNESTVE 427          
BLAST of EY690149 vs. ExPASy Swiss-Prot
Match: GLGA_LEPCP (Glycogen synthase OS=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) GN=glgA PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 6.375e-15
Identity = 42/95 (44.21%), Postives = 56/95 (58.95%), Query Frame = 2
Query:    8 MEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV--------EEGFTGFQMGSFSVD 268
            ME +  +L   +P  A     ++   AH +IAG+D IL+PSRFEPCGL QL+ ++YGT+P+V   GGLVDTV        +   TGF    FS D
Sbjct:  344 MENEFRRLAEQHPTAAAVRLGYDEAFAHRLIAGSDLILVPSRFEPCGLTQLYGLKYGTLPVVRRVGGLVDTVADARLETLDHDATGFVFDDFSAD 438          
BLAST of EY690149 vs. ExPASy Swiss-Prot
Match: GLGA_KOSOT (Glycogen synthase OS=Kosmotoga olearia (strain TBF 19.5.1) GN=glgA PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 6.375e-15
Identity = 39/73 (53.42%), Postives = 50/73 (68.49%), Query Frame = 2
Query:   11 EKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEE 229
            E+  + L   +PEK      FN+ LA  I AG+D  L+PSR+EPCGL Q+ AMRYGT+P+V  TGGL DTV+E
Sbjct:  327 ERLFKSLGERFPEKVSANITFNVDLAQKIYAGSDMFLMPSRYEPCGLGQMFAMRYGTIPVVRFTGGLRDTVKE 399          
BLAST of EY690149 vs. ExPASy Swiss-Prot
Match: GLGA_DESAP (Glycogen synthase OS=Desulforudis audaxviator (strain MP104C) GN=glgA PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 6.375e-15
Identity = 39/76 (51.32%), Postives = 50/76 (65.79%), Query Frame = 2
Query:    2 KTMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEE 229
            K  E    ++++ +P K      FN+ LA  I AG+D  L+PSRFEPCGL QL ++RYGT+PIV  TGGL DTV E
Sbjct:  345 KYYEDMFREMKVQHPGKIAAHIGFNVVLAQRIYAGSDMFLMPSRFEPCGLGQLISLRYGTIPIVRETGGLADTVNE 420          
BLAST of EY690149 vs. ExPASy Swiss-Prot
Match: GLGA_ANAD2 (Glycogen synthase OS=Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258) GN=glgA PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 6.375e-15
Identity = 39/72 (54.17%), Postives = 52/72 (72.22%), Query Frame = 2
Query:   41 YPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGS 256
            +P++      F+  LAH I AGAD  L+PSRFEPCGL Q++++RYGTVP+V + GGL DTVE+ F GF  G+
Sbjct:  346 HPDRVAARIGFDEGLAHRIEAGADLFLMPSRFEPCGLNQMYSLRYGTVPVVRAVGGLADTVED-FDGFARGT 416          
The following BLAST results are available for this feature:
BLAST of EY690149 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 343
Match NameE-valueIdentityDescription
SSY23_ORYSJ2.861e-1551.35Soluble starch synthase 2-3, chloroplastic/amylopl... [more]
GLGA_ANADE2.861e-1555.56Glycogen synthase OS=Anaeromyxobacter dehalogenans... [more]
GLGA_BACST3.737e-1556.94Glycogen synthase OS=Bacillus stearothermophilus G... [more]
GLGA_ANOFW3.737e-1549.45Glycogen synthase OS=Anoxybacillus flavithermus (s... [more]
GLGA_FERNB4.881e-1549.44Glycogen synthase OS=Fervidobacterium nodosum (str... [more]
GLGA_PSEU26.375e-1541.86Glycogen synthase OS=Pseudomonas syringae pv. syri... [more]
GLGA_LEPCP6.375e-1544.21Glycogen synthase OS=Leptothrix cholodnii (strain ... [more]
GLGA_KOSOT6.375e-1553.42Glycogen synthase OS=Kosmotoga olearia (strain TBF... [more]
GLGA_DESAP6.375e-1551.32Glycogen synthase OS=Desulforudis audaxviator (str... [more]
GLGA_ANAD26.375e-1554.17Glycogen synthase OS=Anaeromyxobacter dehalogenans... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C2-003-058-A10-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY690149 ID=EY690149; Name=EY690149; organism=Citrus sinensis; type=EST; length=887bp
AAAAACAATGGAGAAGCAGCTTGAACAGTTGGAGATACTGTACCCTGAGA
AAGCCAGAGGAGTAGCGAAATTCAATATTCCTCTGGCGCATATGATAATA
GCAGGAGCTGATTTTATTTTGATTCCAAGCAGATTTGAACCTTGTGGTCT
CATTCAATTACATGCCATGCGTTATGGAACCGTACCTATCGTGGCTTCCA
CTGGTGGTTTGGTTGACACTGTGGAAGAAGGCTTTACAGGATTCCAGATG
GGAAGCTTCAGTGTTGACTGTGAGGCTGTGGATCCCGTAAATGCGGCTGC
ACAGACCCACCACCCGCACGACCACCTCTCGCCACCAATCGGCACTCCGC
CCTCNGAAACAACTGAACGAAACTCGGATAGACACGGGAACCTTCGCGGA
GGGGGGGGGGAGGAAGCACACCGGACAGGACCCCCCCACGCGCCGCACGA
CCGAACGGGCCCCACACGCGACCGCCCCAAACCACGCACCCCCAGCGCGC
CGCCACGGCCGCGGCCCGCGCCCGACACACGCCCCCACACCACACCAACA
CACGCCACCCCAACAACCGGCGCCACACACACAACCACGCACAAGCACAC
ACAGAGCAGAAACCACGAACGACGTACCAACGAACCGACAACGAAAAGGC
CACCGAGACACGCGCCCGATAAAACCAACCAGGCCAAGACACAAAGCAGA
AGCGACACCCAGCGCGCACCCCGGACCGCGACCACAGAAACCCCCGCACA
CACACACCCCCGACCGACGCAGAACGCCGCGACGGCCGTGAGGACGAGCC
AACAAAACACCGAGCCACAACACCGACCGCACGACCCCAGACAAACCCCT
CCACGAGCGCCAGCCGACAAGACGCGGGACGACCACA
back to top