EY690137

Overview
NameEY690137
Unique NameEY690137
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length574
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2065 contig Csv1_Contig2065:140..711. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of EY690137 vs. ExPASy Swiss-Prot
Match: RL40_MOUSE (60S ribosomal protein L40 OS=Mus musculus GN=Uba52 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 6.052e-21
Identity = 45/52 (86.54%), Postives = 47/52 (90.38%), Query Frame = 2 
Query:  149 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHNNQLRPKKKIK 304
            IIEPSL  LA+KYN DKMICRKCYARLHPRAVNCRKKKCGH N LRPKKK+K
Sbjct:    1 IIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTNNLRPKKKVK 52
[Close]
BLAST of EY690137 vs. ExPASy Swiss-Prot
Match: RL40_MACFA (60S ribosomal protein L40 OS=Macaca fascicularis GN=UBA52 PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 6.052e-21
Identity = 45/52 (86.54%), Postives = 47/52 (90.38%), Query Frame = 2 
Query:  149 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHNNQLRPKKKIK 304
            IIEPSL  LA+KYN DKMICRKCYARLHPRAVNCRKKKCGH N LRPKKK+K
Sbjct:    1 IIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTNNLRPKKKVK 52
[Close]
BLAST of EY690137 vs. ExPASy Swiss-Prot
Match: RL40_HUMAN (60S ribosomal protein L40 OS=Homo sapiens GN=UBA52 PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 6.052e-21
Identity = 45/52 (86.54%), Postives = 47/52 (90.38%), Query Frame = 2 
Query:  149 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHNNQLRPKKKIK 304
            IIEPSL  LA+KYN DKMICRKCYARLHPRAVNCRKKKCGH N LRPKKK+K
Sbjct:    1 IIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTNNLRPKKKVK 52
[Close]
BLAST of EY690137 vs. ExPASy Swiss-Prot
Match: RL40_FELCA (60S ribosomal protein L40 OS=Felis catus GN=UBA52 PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 6.052e-21
Identity = 45/52 (86.54%), Postives = 47/52 (90.38%), Query Frame = 2 
Query:  149 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHNNQLRPKKKIK 304
            IIEPSL  LA+KYN DKMICRKCYARLHPRAVNCRKKKCGH N LRPKKK+K
Sbjct:    1 IIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTNNLRPKKKVK 52
[Close]
BLAST of EY690137 vs. ExPASy Swiss-Prot
Match: RL40_CHICK (60S ribosomal protein L40 OS=Gallus gallus GN=UBA52 PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 6.052e-21
Identity = 45/52 (86.54%), Postives = 47/52 (90.38%), Query Frame = 2 
Query:  149 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHNNQLRPKKKIK 304
            IIEPSL  LA+KYN DKMICRKCYARLHPRAVNCRKKKCGH N LRPKKK+K
Sbjct:    1 IIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTNNLRPKKKVK 52
[Close]
BLAST of EY690137 vs. ExPASy Swiss-Prot
Match: RL40_CANFA (60S ribosomal protein L40 OS=Canis familiaris GN=UBA52 PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 6.052e-21
Identity = 45/52 (86.54%), Postives = 47/52 (90.38%), Query Frame = 2 
Query:  149 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHNNQLRPKKKIK 304
            IIEPSL  LA+KYN DKMICRKCYARLHPRAVNCRKKKCGH N LRPKKK+K
Sbjct:    1 IIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTNNLRPKKKVK 52
[Close]
BLAST of EY690137 vs. ExPASy Swiss-Prot
Match: RL40_BOVIN (60S ribosomal protein L40 OS=Bos taurus GN=UBA52 PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 6.052e-21
Identity = 45/52 (86.54%), Postives = 47/52 (90.38%), Query Frame = 2 
Query:  149 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHNNQLRPKKKIK 304
            IIEPSL  LA+KYN DKMICRKCYARLHPRAVNCRKKKCGH N LRPKKK+K
Sbjct:    1 IIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTNNLRPKKKVK 52
[Close]
BLAST of EY690137 vs. ExPASy Swiss-Prot
Match: RL40_DROME (60S ribosomal protein L40 OS=Drosophila melanogaster GN=RpL40 PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.300e-20
Identity = 44/52 (84.62%), Postives = 46/52 (88.46%), Query Frame = 2 
Query:  149 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHNNQLRPKKKIK 304
            IIEPSL  LA+KYN DKMICRKCYARLHPRA NCRKKKCGH N LRPKKK+K
Sbjct:    1 IIEPSLRILAQKYNCDKMICRKCYARLHPRATNCRKKKCGHTNNLRPKKKLK 52
[Close]
BLAST of EY690137 vs. ExPASy Swiss-Prot
Match: RL40_ACACA (60S ribosomal protein L40 OS=Acanthamoeba castellanii PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.004e-20
Identity = 42/52 (80.77%), Postives = 47/52 (90.38%), Query Frame = 2 
Query:  149 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHNNQLRPKKKIK 304
            +IEPSL  LARKYN DK++CRKCYARLHPRAVNCRKKKCGH+N  RPKKK+K
Sbjct:    1 VIEPSLQVLARKYNCDKVVCRKCYARLHPRAVNCRKKKCGHSNHWRPKKKLK 52
[Close]
BLAST of EY690137 vs. ExPASy Swiss-Prot
Match: RL40_DICDI (60S ribosomal protein L40 OS=Dictyostelium discoideum GN=ubqB PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 6.692e-20
Identity = 43/50 (86.00%), Postives = 46/50 (92.00%), Query Frame = 2 
Query:  152 IEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHNNQLRPKKKI 301
            IEPSL+ LARKY  DKMICRKCYARLHPRAVNCRKKKCGH+N LRPKKK+
Sbjct:    1 IEPSLVILARKYKCDKMICRKCYARLHPRAVNCRKKKCGHSNNLRPKKKL 50
The following BLAST results are available for this feature:
BLAST of EY690137 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 107
Match NameE-valueIdentityDescription
RL40_MOUSE6.052e-2186.5460S ribosomal protein L40 OS=Mus musculus GN=Uba52... [more]
RL40_MACFA6.052e-2186.5460S ribosomal protein L40 OS=Macaca fascicularis G... [more]
RL40_HUMAN6.052e-2186.5460S ribosomal protein L40 OS=Homo sapiens GN=UBA52... [more]
RL40_FELCA6.052e-2186.5460S ribosomal protein L40 OS=Felis catus GN=UBA52 ... [more]
RL40_CHICK6.052e-2186.5460S ribosomal protein L40 OS=Gallus gallus GN=UBA5... [more]
RL40_CANFA6.052e-2186.5460S ribosomal protein L40 OS=Canis familiaris GN=U... [more]
RL40_BOVIN6.052e-2186.5460S ribosomal protein L40 OS=Bos taurus GN=UBA52 P... [more]
RL40_DROME2.300e-2084.6260S ribosomal protein L40 OS=Drosophila melanogast... [more]
RL40_ACACA3.004e-2080.7760S ribosomal protein L40 OS=Acanthamoeba castella... [more]
RL40_DICDI6.692e-2086.0060S ribosomal protein L40 OS=Dictyostelium discoid... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-057-H06-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY690137 ID=EY690137; Name=EY690137; organism=Citrus sinensis; type=EST; length=574bp
AGCCAAGATCCAAGACAAGGAGGGTATTCCGCCGGACCAGCATAGACTTA
TCTTCGCTGGGAAGCAACTTGAGGATGGCCGTACTCTAACCGATTACAAT
ATCCAAAAGGAGTCAACTCTGCGTCTGGTTCTGAGGCTTCGTGGTGGTAT
TATTGAGCCTTCTTTGATGGCATTGGCAAGGAAGTATAACCAGGACAAGA
TGATCTGCCGAAAATGTTATGCACGCCTGCACCCCCGTGCTGTGAACTGC
AGGAAGAAGAAATGTGGGCACAACAACCAGCTGAGGCCAAAGAAGAAGAT
CAAGTAGATATTCTGCAGAGAAATGCTACATTTTATACTGAAACAGGATG
TTTTGCCTAGAATATGTAGCATCAACTATTGCCTAGTAATAGTTGTCACT
TAGTACGTGATTTCTGTTTCAAGATGTTTCCAGGGTTGAGAGTATTTGTA
AACTGATTACTATCGCCTCTATGTGCCCGTGACATTGAGCAATTTATTAA
TAACTTGCCTGAATCTACTATTTTCTTAAAAAAAAAAAAAAAAAAAAAAA
AAGGGAAGACAGACATCTAAAGAT
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