EY690137

Overview
NameEY690137
Unique NameEY690137
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length574
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY690137 vs. ExPASy Swiss-Prot
Match: RL40_NEUCR (60S ribosomal protein L40 OS=Neurospora crassa GN=ubi-1 PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.543e-19
Identity = 43/52 (82.69%), Postives = 46/52 (88.46%), Query Frame = 2
Query:  149 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHNNQLRPKKKIK 304
            IIEPSL ALA K+N DKMICRKCYARL PRA NCRK+KCGH NQLRPKKK+K
Sbjct:    1 IIEPSLKALASKFNCDKMICRKCYARLPPRATNCRKRKCGHTNQLRPKKKLK 52          
BLAST of EY690137 vs. ExPASy Swiss-Prot
Match: RL40_SCHPO (60S ribosomal protein L40 OS=Schizosaccharomyces pombe GN=ubi1 PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 4.337e-19
Identity = 43/52 (82.69%), Postives = 45/52 (86.54%), Query Frame = 2
Query:  149 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHNNQLRPKKKIK 304
            IIEPSL ALA KYN +K ICRKCYARL PRA NCRKKKCGH NQLRPKKK+K
Sbjct:    1 IIEPSLKALASKYNCEKQICRKCYARLPPRATNCRKKKCGHTNQLRPKKKLK 52          
BLAST of EY690137 vs. ExPASy Swiss-Prot
Match: RL40_YEAST (60S ribosomal protein L40 OS=Saccharomyces cerevisiae GN=UBI1 PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 5.665e-19
Identity = 42/52 (80.77%), Postives = 45/52 (86.54%), Query Frame = 2
Query:  149 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHNNQLRPKKKIK 304
            IIEPSL ALA KYN DK +CRKCYARL PRA NCRK+KCGH NQLRPKKK+K
Sbjct:    1 IIEPSLKALASKYNCDKSVCRKCYARLPPRATNCRKRKCGHTNQLRPKKKLK 52          
BLAST of EY690137 vs. ExPASy Swiss-Prot
Match: RL40_CRYNE (60S ribosomal protein L40 OS=Cryptococcus neoformans GN=UBI1 PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.380e-17
Identity = 39/52 (75.00%), Postives = 45/52 (86.54%), Query Frame = 2
Query:  149 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHNNQLRPKKKIK 304
            IIEPSL ALA KYN +K ICRKCYARL PRA NCRK+KCGH++Q+RPKK +K
Sbjct:    1 IIEPSLKALASKYNCEKQICRKCYARLPPRATNCRKRKCGHSSQIRPKKALK 52          
BLAST of EY690137 vs. ExPASy Swiss-Prot
Match: RL40_EIMBO (60S ribosomal protein L40 OS=Eimeria bovis PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.108e-17
Identity = 41/52 (78.85%), Postives = 43/52 (82.69%), Query Frame = 2
Query:  149 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHNNQLRPKKKIK 304
            IIEPSL  LA KYN +K ICRKCYARL PRA NCRKKKCGH +QLRPKKK K
Sbjct:    1 IIEPSLALLASKYNCEKKICRKCYARLPPRATNCRKKKCGHTSQLRPKKKPK 52          
BLAST of EY690137 vs. ExPASy Swiss-Prot
Match: RL40_CAEEL (60S ribosomal protein L40 OS=Caenorhabditis elegans GN=ubq-2 PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 5.302e-17
Identity = 40/52 (76.92%), Postives = 45/52 (86.54%), Query Frame = 2
Query:  149 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHNNQLRPKKKIK 304
            IIEPSL  LA+KYN DK ICRKCYARL PRA NCRKKKCGH+++LR KKK+K
Sbjct:    1 IIEPSLRQLAQKYNCDKQICRKCYARLPPRASNCRKKKCGHSSELRIKKKLK 52          
BLAST of EY690137 vs. ExPASy Swiss-Prot
Match: RL40_TOBAC (60S ribosomal protein L40 OS=Nicotiana tabacum PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 8.465e-15
Identity = 41/72 (56.94%), Postives = 45/72 (62.50%), Query Frame = 2
Query:  149 IIEPSLMALARKYNQDKMICRKCY--------------------ARLHPRAVNCRKKKCGHNNQLRPKKKIK 304
            IIEPSL ALA K+N DKMICRKCY                    ARL PRA NCRK+KCGH N +RPKKK+K
Sbjct:    1 IIEPSLKALASKFNCDKMICRKCYVRCPRRTPQRTCRVLTWIPQARLPPRATNCRKRKCGHTNHVRPKKKLK 72          
BLAST of EY690137 vs. ExPASy Swiss-Prot
Match: UBIQ_XENLA (Ubiquitin OS=Xenopus laevis PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.106e-14
Identity = 39/49 (79.59%), Postives = 40/49 (81.63%), Query Frame = 2
Query:    2 AKIQDKEGIPPDQHRLIFAGKQLEDGRTLTDYNIQKESTXXXXXXXXGG 148
            AKIQDKEGIPPDQ RLIFAGKQLEDGRTL+DYNIQKEST        GG
Sbjct:   28 AKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76          
BLAST of EY690137 vs. ExPASy Swiss-Prot
Match: UBIQ_TETPY (Ubiquitin OS=Tetrahymena pyriformis GN=TUF11 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.106e-14
Identity = 39/49 (79.59%), Postives = 40/49 (81.63%), Query Frame = 2
Query:    2 AKIQDKEGIPPDQHRLIFAGKQLEDGRTLTDYNIQKESTXXXXXXXXGG 148
            AKIQDKEGIPPDQ RLIFAGKQLEDGRTL+DYNIQKEST        GG
Sbjct:   28 AKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76          
BLAST of EY690137 vs. ExPASy Swiss-Prot
Match: UBIQ_STRPU (Ubiquitin OS=Strongylocentrotus purpuratus PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.106e-14
Identity = 39/49 (79.59%), Postives = 40/49 (81.63%), Query Frame = 2
Query:    2 AKIQDKEGIPPDQHRLIFAGKQLEDGRTLTDYNIQKESTXXXXXXXXGG 148
            AKIQDKEGIPPDQ RLIFAGKQLEDGRTL+DYNIQKEST        GG
Sbjct:   28 AKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76          
The following BLAST results are available for this feature:
BLAST of EY690137 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 107
Match NameE-valueIdentityDescription
RL40_NEUCR2.543e-1982.6960S ribosomal protein L40 OS=Neurospora crassa GN=... [more]
RL40_SCHPO4.337e-1982.6960S ribosomal protein L40 OS=Schizosaccharomyces p... [more]
RL40_YEAST5.665e-1980.7760S ribosomal protein L40 OS=Saccharomyces cerevis... [more]
RL40_CRYNE2.380e-1775.0060S ribosomal protein L40 OS=Cryptococcus neoforma... [more]
RL40_EIMBO3.108e-1778.8560S ribosomal protein L40 OS=Eimeria bovis PE=2 SV... [more]
RL40_CAEEL5.302e-1776.9260S ribosomal protein L40 OS=Caenorhabditis elegan... [more]
RL40_TOBAC8.465e-1556.9460S ribosomal protein L40 OS=Nicotiana tabacum PE=... [more]
UBIQ_XENLA1.106e-1479.59Ubiquitin OS=Xenopus laevis PE=1 SV=1[more]
UBIQ_TETPY1.106e-1479.59Ubiquitin OS=Tetrahymena pyriformis GN=TUF11 PE=3 ... [more]
UBIQ_STRPU1.106e-1479.59Ubiquitin OS=Strongylocentrotus purpuratus PE=3 SV... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-057-H06-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY690137 ID=EY690137; Name=EY690137; organism=Citrus sinensis; type=EST; length=574bp
AGCCAAGATCCAAGACAAGGAGGGTATTCCGCCGGACCAGCATAGACTTA
TCTTCGCTGGGAAGCAACTTGAGGATGGCCGTACTCTAACCGATTACAAT
ATCCAAAAGGAGTCAACTCTGCGTCTGGTTCTGAGGCTTCGTGGTGGTAT
TATTGAGCCTTCTTTGATGGCATTGGCAAGGAAGTATAACCAGGACAAGA
TGATCTGCCGAAAATGTTATGCACGCCTGCACCCCCGTGCTGTGAACTGC
AGGAAGAAGAAATGTGGGCACAACAACCAGCTGAGGCCAAAGAAGAAGAT
CAAGTAGATATTCTGCAGAGAAATGCTACATTTTATACTGAAACAGGATG
TTTTGCCTAGAATATGTAGCATCAACTATTGCCTAGTAATAGTTGTCACT
TAGTACGTGATTTCTGTTTCAAGATGTTTCCAGGGTTGAGAGTATTTGTA
AACTGATTACTATCGCCTCTATGTGCCCGTGACATTGAGCAATTTATTAA
TAACTTGCCTGAATCTACTATTTTCTTAAAAAAAAAAAAAAAAAAAAAAA
AAGGGAAGACAGACATCTAAAGAT
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