EY690137

Overview
NameEY690137
Unique NameEY690137
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length574
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY690137 vs. ExPASy Swiss-Prot
Match: UBIQ_PHYIN (Ubiquitin OS=Phytophthora infestans PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.217e-14
Identity = 38/48 (79.17%), Postives = 39/48 (81.25%), Query Frame = 2
Query:    5 KIQDKEGIPPDQHRLIFAGKQLEDGRTLTDYNIQKESTXXXXXXXXGG 148
            KIQDKEGIPPDQ RLIFAGKQLEDGRTL+DYNIQKEST        GG
Sbjct:   29 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76          
BLAST of EY690137 vs. ExPASy Swiss-Prot
Match: UBIQ_NEUCR (Ubiquitin OS=Neurospora crassa GN=ubi-1 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.217e-14
Identity = 38/48 (79.17%), Postives = 39/48 (81.25%), Query Frame = 2
Query:    5 KIQDKEGIPPDQHRLIFAGKQLEDGRTLTDYNIQKESTXXXXXXXXGG 148
            KIQDKEGIPPDQ RLIFAGKQLEDGRTL+DYNIQKEST        GG
Sbjct:   29 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76          
BLAST of EY690137 vs. ExPASy Swiss-Prot
Match: UBIQ_LUMTE (Ubiquitin (Fragment) OS=Lumbricus terrestris PE=1 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 3.217e-14
Identity = 37/39 (94.87%), Postives = 38/39 (97.44%), Query Frame = 2
Query:    2 AKIQDKEGIPPDQHRLIFAGKQLEDGRTLTDYNIQKEST 118
            AKIQDKEGIPPDQ RLIFAGKQLEDGRTL+DYNIQKEST
Sbjct:   17 AKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST 55          
BLAST of EY690137 vs. ExPASy Swiss-Prot
Match: UBIQ_LEIMA (Ubiquitin OS=Leishmania major GN=UB-EP52 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.217e-14
Identity = 38/49 (77.55%), Postives = 40/49 (81.63%), Query Frame = 2
Query:    2 AKIQDKEGIPPDQHRLIFAGKQLEDGRTLTDYNIQKESTXXXXXXXXGG 148
            AKIQDKEGIPPDQ RLIFAGKQLE+GRTL+DYNIQKEST        GG
Sbjct:   28 AKIQDKEGIPPDQQRLIFAGKQLEEGRTLSDYNIQKESTLHLVLRLRGG 76          
BLAST of EY690137 vs. ExPASy Swiss-Prot
Match: UBIQ_AGLNE (Ubiquitin OS=Aglaothamnion neglectum PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.217e-14
Identity = 38/48 (79.17%), Postives = 39/48 (81.25%), Query Frame = 2
Query:    5 KIQDKEGIPPDQHRLIFAGKQLEDGRTLTDYNIQKESTXXXXXXXXGG 148
            KIQDKEGIPPDQ RLIFAGKQLEDGRTL+DYNIQKEST        GG
Sbjct:   29 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76          
BLAST of EY690137 vs. ExPASy Swiss-Prot
Match: UBIQ_ACECL (Ubiquitin OS=Acetabularia cliftonii PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.217e-14
Identity = 38/49 (77.55%), Postives = 39/49 (79.59%), Query Frame = 2
Query:    2 AKIQDKEGIPPDQHRLIFAGKQLEDGRTLTDYNIQKESTXXXXXXXXGG 148
            +KIQDKEGIPPDQ RLIFAGKQLEDGRTL DYNIQKEST        GG
Sbjct:   28 SKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76          
BLAST of EY690137 vs. ExPASy Swiss-Prot
Match: RL40_TETPY (60S ribosomal protein L40 OS=Tetrahymena pyriformis GN=TUF11 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.217e-14
Identity = 33/51 (64.71%), Postives = 42/51 (82.35%), Query Frame = 2
Query:  152 IEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHNNQLRPKKKIK 304
            +EP++ ALA+KYN +K +CR CYARL P+A NCRK+KCGH+N LR KKK K
Sbjct:    2 MEPTIAALAKKYNCEKKVCRDCYARLPPKATNCRKRKCGHSNSLRLKKKPK 52          
BLAST of EY690137 vs. ExPASy Swiss-Prot
Match: UBIQ_TRYBB (Ubiquitin OS=Trypanosoma brucei brucei PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 4.201e-14
Identity = 38/49 (77.55%), Postives = 39/49 (79.59%), Query Frame = 2
Query:    2 AKIQDKEGIPPDQHRLIFAGKQLEDGRTLTDYNIQKESTXXXXXXXXGG 148
            AKIQDKEGIPPDQ RLIFAGKQLE+GRTL DYNIQKEST        GG
Sbjct:   28 AKIQDKEGIPPDQQRLIFAGKQLEEGRTLADYNIQKESTLHLVLRLRGG 76          
BLAST of EY690137 vs. ExPASy Swiss-Prot
Match: UBIQ_EUPEU (Ubiquitin OS=Euplotes eurystomus PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 4.201e-14
Identity = 38/48 (79.17%), Postives = 38/48 (79.17%), Query Frame = 2
Query:    5 KIQDKEGIPPDQHRLIFAGKQLEDGRTLTDYNIQKESTXXXXXXXXGG 148
            KIQDKEGIPPDQ RLIFAGKQLEDGRTL DYNIQKEST        GG
Sbjct:   29 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76          
BLAST of EY690137 vs. ExPASy Swiss-Prot
Match: UBIQ_ACACA (Ubiquitin OS=Acanthamoeba castellanii PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 4.201e-14
Identity = 38/48 (79.17%), Postives = 38/48 (79.17%), Query Frame = 2
Query:    5 KIQDKEGIPPDQHRLIFAGKQLEDGRTLTDYNIQKESTXXXXXXXXGG 148
            KIQDKEGIPPDQ RLIFAGKQLEDGRTL DYNIQKEST        GG
Sbjct:   29 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76          
The following BLAST results are available for this feature:
BLAST of EY690137 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 107
Match NameE-valueIdentityDescription
UBIQ_PHYIN3.217e-1479.17Ubiquitin OS=Phytophthora infestans PE=1 SV=1[more]
UBIQ_NEUCR3.217e-1479.17Ubiquitin OS=Neurospora crassa GN=ubi-1 PE=1 SV=1[more]
UBIQ_LUMTE3.217e-1494.87Ubiquitin (Fragment) OS=Lumbricus terrestris PE=1 ... [more]
UBIQ_LEIMA3.217e-1477.55Ubiquitin OS=Leishmania major GN=UB-EP52 PE=3 SV=1[more]
UBIQ_AGLNE3.217e-1479.17Ubiquitin OS=Aglaothamnion neglectum PE=3 SV=1[more]
UBIQ_ACECL3.217e-1477.55Ubiquitin OS=Acetabularia cliftonii PE=3 SV=1[more]
RL40_TETPY3.217e-1464.7160S ribosomal protein L40 OS=Tetrahymena pyriformi... [more]
UBIQ_TRYBB4.201e-1477.55Ubiquitin OS=Trypanosoma brucei brucei PE=3 SV=1[more]
UBIQ_EUPEU4.201e-1479.17Ubiquitin OS=Euplotes eurystomus PE=3 SV=1[more]
UBIQ_ACACA4.201e-1479.17Ubiquitin OS=Acanthamoeba castellanii PE=3 SV=1[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C2-003-057-H06-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY690137 ID=EY690137; Name=EY690137; organism=Citrus sinensis; type=EST; length=574bp
AGCCAAGATCCAAGACAAGGAGGGTATTCCGCCGGACCAGCATAGACTTA
TCTTCGCTGGGAAGCAACTTGAGGATGGCCGTACTCTAACCGATTACAAT
ATCCAAAAGGAGTCAACTCTGCGTCTGGTTCTGAGGCTTCGTGGTGGTAT
TATTGAGCCTTCTTTGATGGCATTGGCAAGGAAGTATAACCAGGACAAGA
TGATCTGCCGAAAATGTTATGCACGCCTGCACCCCCGTGCTGTGAACTGC
AGGAAGAAGAAATGTGGGCACAACAACCAGCTGAGGCCAAAGAAGAAGAT
CAAGTAGATATTCTGCAGAGAAATGCTACATTTTATACTGAAACAGGATG
TTTTGCCTAGAATATGTAGCATCAACTATTGCCTAGTAATAGTTGTCACT
TAGTACGTGATTTCTGTTTCAAGATGTTTCCAGGGTTGAGAGTATTTGTA
AACTGATTACTATCGCCTCTATGTGCCCGTGACATTGAGCAATTTATTAA
TAACTTGCCTGAATCTACTATTTTCTTAAAAAAAAAAAAAAAAAAAAAAA
AAGGGAAGACAGACATCTAAAGAT
back to top