EY688710

Overview
NameEY688710
Unique NameEY688710
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length679
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY688710 vs. ExPASy Swiss-Prot
Match: MUTS_CLOBM (DNA mismatch repair protein mutS OS=Clostridium botulinum (strain Loch Maree / Type A3) GN=mutS PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.889e-20
Identity = 58/179 (32.40%), Postives = 100/179 (55.87%), Query Frame = 2
Query:    5 ETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLV--ERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSIGESFKSSEQRSEFSSLHEEWLKTIVNVSRVDCNSDDDDAYDTL 535
            E +++L+ AT  SLV+LDE+GRGTST+DG +IA++V   +   + + C+ LFATHYH LTK         L+      K+ S + S+ + E+VFL ++  G   +SYG++VA +AG+P  V+  A      ++    E+  +     E+ S  +++++   +      N + +  +DTL
Sbjct:  677 EVSNILKNATSKSLVLLDEVGRGTSTYDGLSIAWSVIEYICNNKNLRCKTLFATHYHELTK---------LEDNIKGVKNYSVSVSELENEIVFLRKIIRGGADQSYGIEVAKLAGLPSPVINRAKEILQHIEGDKEENSLNITPSKEYKS--KDYIEVSKDTLNTKNNLESEIKHDTL 844          
BLAST of EY688710 vs. ExPASy Swiss-Prot
Match: MSH3_EMENI (DNA mismatch repair protein msh3 OS=Emericella nidulans GN=msh3 PE=3 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 1.889e-20
Identity = 57/135 (42.22%), Postives = 80/135 (59.26%), Query Frame = 2
Query:    2 TETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSI 406
            +ETA +L++AT  SLVILDELGRGTST DG AIA AV   +V  I    LF THY  L+    S P   L+++   F   SE+ +  D+++ FLY +  G    SYGL VA +A +P  ++E A   +  +++ I
Sbjct:  938 SETADILKQATPRSLVILDELGRGTSTHDGVAIAQAVLDYMVRSIRSLTLFITHYQHLSAMVHSFPDGELRNVHMRF---SESGTGADEDITFLYEIGEGVAHRSYGLNVARLANLPAPLLEMAKQKSAELEEKI 1069          
BLAST of EY688710 vs. ExPASy Swiss-Prot
Match: MUTS_SHEB9 (DNA mismatch repair protein mutS OS=Shewanella baltica (strain OS195) GN=mutS PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.467e-20
Identity = 50/126 (39.68%), Postives = 77/126 (61.11%), Query Frame = 2
Query:    2 TETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASH 379
            TETA++L  A+  SLV++DE+GRGTST+DG ++A++    L +++    LFATHY  LT+         L  +     +   +  + D  + F++ +  GA  +SYGLQVA +AGVP KV++AA H
Sbjct:  679 TETANILHNASASSLVLMDEIGRGTSTYDGLSLAWSAAEYLAQQVGAMTLFATHYFELTQ---------LPELMAGVYNVHLDAIEHDDTIAFMHAVQEGAASKSYGLQVAALAGVPNKVIKAAKH 795          
BLAST of EY688710 vs. ExPASy Swiss-Prot
Match: MUTS_PSEHT (DNA mismatch repair protein mutS OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=mutS PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.467e-20
Identity = 61/189 (32.28%), Postives = 98/189 (51.85%), Query Frame = 2
Query:    2 TETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAA--------SHAALAMKKSIGESFKSSEQRSEFSSLHEEWLKTIVNVSRVDCNSDDDDAYDTLFCL 544
            TETA++L  AT  SLV++DE+GRGTST+DG ++AYA    L  +I+ + LFATHY  LT+     P +   H+         +  + +  + F++ +  GA  +S+GLQVA +AGVP+ V+  A        +H ++       ++F  + Q  + S    E   T ++      N     A+D L+ L
Sbjct:  682 TETATILNNATAQSLVLMDEIGRGTSTYDGLSLAYATADHLASKISAKTLFATHYFELTELAEQTPGLVNVHL---------DAIEHNDTIAFMHTVLDGAASKSFGLQVAALAGVPRSVINQAKQKLKLLENHQSVTAPNIEQQAFTFNNQAQQISPSEVELQLTAIDPD----NLSPRQAHDLLYKL 857          
BLAST of EY688710 vs. ExPASy Swiss-Prot
Match: MUTS_OCHA4 (DNA mismatch repair protein mutS OS=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) GN=mutS PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.467e-20
Identity = 53/123 (43.09%), Postives = 75/123 (60.98%), Query Frame = 2
Query:    5 ETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAA 373
            ETA++L +A + SLVILDE+GRGT+TFDG +IA+A    L E+  CR LFATH+H +T          L        + +    + D ++VFL+ +  GA   SYG+QVA +AG+P+ VV  A
Sbjct:  720 ETAAILNQAGERSLVILDEIGRGTATFDGLSIAWAAVEYLHEKNRCRALFATHFHEMT---------ALSEKLERLSNVTMRVKEWDNDVVFLHEVAKGAADRSYGVQVARLAGLPEAVVNRA 833          
BLAST of EY688710 vs. ExPASy Swiss-Prot
Match: MUTS_LACGA (DNA mismatch repair protein mutS OS=Lactobacillus gasseri (strain ATCC 33323 / DSM 20243) GN=mutS PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.467e-20
Identity = 67/201 (33.33%), Postives = 103/201 (51.24%), Query Frame = 2
Query:    2 TETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVV-EAASHAALAMKKSIGESFKSSEQRSEFSSLHEEWLKTIVNVSRVDCNSDDDDAYDTLFCLWHELKNSYQLHN*KRRWQR 601
            +E    LQ AT+ SLV+ DE+GRGT+T+DG A+A A+ + L +++  + LFATHYH LT         TL+H+       +E   K    L+FL+++  G   +SYG+ VA +AG+P KV+ EA +      K+  GE   +SEQ   F         T    S    + D+ D  D +  ++   K   Q+     +WQ+
Sbjct:  669 SEANDALQHATKRSLVLFDEIGRGTATYDGMALAGAIVKYLHDKVGAKTLFATHYHELT-----DLDQTLKHLKNIHVGATEENGK----LIFLHKILPGPADQSYGIHVAQLAGLPHKVLREATTMLKRLEKQGAGELQPASEQLDLF---------TAEEASVPAISDDEKDVLDDIQNVYLADKTPLQVMELVAQWQQ 851          
BLAST of EY688710 vs. ExPASy Swiss-Prot
Match: MUTS_CLOBK (DNA mismatch repair protein mutS OS=Clostridium botulinum (strain Okra / Type B1) GN=mutS PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.467e-20
Identity = 58/179 (32.40%), Postives = 100/179 (55.87%), Query Frame = 2
Query:    5 ETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLV--ERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSIGESFKSSEQRSEFSSLHEEWLKTIVNVSRVDCNSDDDDAYDTL 535
            E +++L+ AT  SLV+LDE+GRGTST+DG +IA++V   +   + + C+ LFATHYH LTK         L+      K+ S + S+ + E+VFL ++  G   +SYG++VA +AG+P  V+  A      ++    E+  +     E+ S  +++++   +      N + +  +DTL
Sbjct:  677 EVSNILKNATSKSLVLLDEVGRGTSTYDGLSIAWSVIEYICNNKNLRCKTLFATHYHELTK---------LEDNIEGVKNYSVSVSELENEIVFLRKIIRGGADQSYGIEVAKLAGLPSPVINRAKEILQHIEGDKEENSLNITPSKEYKS--KDYIEASKDTLNTKNNLESEIKHDTL 844          
BLAST of EY688710 vs. ExPASy Swiss-Prot
Match: MUTS_CLOB6 (DNA mismatch repair protein mutS OS=Clostridium botulinum (strain 657 / Type Ba4) GN=mutS PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.467e-20
Identity = 58/179 (32.40%), Postives = 100/179 (55.87%), Query Frame = 2
Query:    5 ETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLV--ERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSIGESFKSSEQRSEFSSLHEEWLKTIVNVSRVDCNSDDDDAYDTL 535
            E +++L+ AT  SLV+LDE+GRGTST+DG +IA++V   +   + + C+ LFATHYH LTK         L+      K+ S + S+ + E+VFL ++  G   +SYG++VA +AG+P  V+  A      ++    E+  +     E+ S  +++++   +      N + +  +DTL
Sbjct:  677 EVSNILKNATSKSLVLLDEVGRGTSTYDGLSIAWSVIEYICNNKNLRCKTLFATHYHELTK---------LEDNIEGVKNYSVSVSELENEIVFLRKIIRGGADQSYGIEVAKLAGLPSPVINRAKEILQHIEGDKEENSLNITPSKEYKS--KDYIEVSKDTLNTKNNLESEIKHDTL 844          
BLAST of EY688710 vs. ExPASy Swiss-Prot
Match: MUTS_BRUSU (DNA mismatch repair protein mutS OS=Brucella suis GN=mutS PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.467e-20
Identity = 52/123 (42.28%), Postives = 75/123 (60.98%), Query Frame = 2
Query:    5 ETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAA 373
            ETA++L +A + SLVILDE+GRGT+TFDG +IA+A    L E+  CR LFATH+H +T          L        + +    + D +++FL+ +  GA   SYG+QVA +AG+P+ VV  A
Sbjct:  720 ETAAILNQAGEHSLVILDEIGRGTATFDGLSIAWAAVEYLHEKNRCRALFATHFHEMT---------ALSEKLERLSNVTMRVKEWDNDVIFLHEVAKGAADRSYGVQVARLAGLPEAVVNRA 833          
BLAST of EY688710 vs. ExPASy Swiss-Prot
Match: MUTS_BRUSI (DNA mismatch repair protein mutS OS=Brucella suis (strain ATCC 23445 / NCTC 10510) GN=mutS PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.467e-20
Identity = 52/123 (42.28%), Postives = 75/123 (60.98%), Query Frame = 2
Query:    5 ETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAA 373
            ETA++L +A + SLVILDE+GRGT+TFDG +IA+A    L E+  CR LFATH+H +T          L        + +    + D +++FL+ +  GA   SYG+QVA +AG+P+ VV  A
Sbjct:  720 ETAAILNQAGEHSLVILDEIGRGTATFDGLSIAWAAVEYLHEKNRCRALFATHFHEMT---------ALSEKLERLSNVTMRVKEWDNDVIFLHEVAKGAADRSYGVQVARLAGLPEAVVNRA 833          
The following BLAST results are available for this feature:
BLAST of EY688710 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
MUTS_CLOBM1.889e-2032.40DNA mismatch repair protein mutS OS=Clostridium bo... [more]
MSH3_EMENI1.889e-2042.22DNA mismatch repair protein msh3 OS=Emericella nid... [more]
MUTS_SHEB92.467e-2039.68DNA mismatch repair protein mutS OS=Shewanella bal... [more]
MUTS_PSEHT2.467e-2032.28DNA mismatch repair protein mutS OS=Pseudoalteromo... [more]
MUTS_OCHA42.467e-2043.09DNA mismatch repair protein mutS OS=Ochrobactrum a... [more]
MUTS_LACGA2.467e-2033.33DNA mismatch repair protein mutS OS=Lactobacillus ... [more]
MUTS_CLOBK2.467e-2032.40DNA mismatch repair protein mutS OS=Clostridium bo... [more]
MUTS_CLOB62.467e-2032.40DNA mismatch repair protein mutS OS=Clostridium bo... [more]
MUTS_BRUSU2.467e-2042.28DNA mismatch repair protein mutS OS=Brucella suis ... [more]
MUTS_BRUSI2.467e-2042.28DNA mismatch repair protein mutS OS=Brucella suis ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-091-F07-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY688710 ID=EY688710; Name=EY688710; organism=Citrus sinensis; type=EST; length=679bp
CACAGAGACGGCATCAGTTCTTCAGAAAGCCACTCAAGATTCTCTGGTAA
TTCTTGATGAACTGGGTCGAGGAACAAGCACTTTTGATGGATATGCCATT
GCCTACGCTGTATTCCGCCAACTTGTTGAAAGGATCAATTGTCGGTTGCT
ATTTGCAACACATTACCATCCACTCACAAAAGAATTTGCTTCTCATCCGC
ATGTTACTCTACAACATATGGCTTGTGCTTTCAAGTCAAACTCTGAAAAC
TATTCGAAAGGTGATCAAGAGCTGGTTTTTCTCTACCGCCTTACTTCCGG
AGCATGCCCAGAGAGCTATGGGTTGCAAGTGGCTGTAATGGCTGGGGTTC
CACAAAAGGTGGTTGAGGCAGCATCACATGCTGCTCTAGCAATGAAAAAA
TCAATAGGAGAAAGTTTCAAGTCGAGTGAACAGAGATCAGAGTTCTCAAG
TCTCCATGAAGAGTGGTTGAAGACCATTGTAAATGTCTCAAGGGTTGATT
GTAATTCCGATGATGATGATGCTTATGACACATTGTTTTGTTTGTGGCAT
GAGCTAAAGAATTCATATCAGTTGCACAACTAAAAGAGAAGGTGGCAAAG
ATAATGATTGCTACATGACTTTGCCTAATTGCCTTAATCAATTTTTCTTT
GTGTAAAAAAAAAAAAAAAAAAAAAAAAA
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