EY688710

Overview
NameEY688710
Unique NameEY688710
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length679
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY688710 vs. ExPASy Swiss-Prot
Match: MSH3_ASPFU (DNA mismatch repair protein msh3 OS=Aspergillus fumigatus GN=msh3 PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.467e-20
Identity = 58/135 (42.96%), Postives = 80/135 (59.26%), Query Frame = 2
Query:    2 TETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSI 406
            +ETA +L++AT  SLVILDELGRGTST DG AIA AV   +V  I    LF THY  L+    S P   L+++   F   +E+ S  D+E+ FLY +  G    SYGL VA +A +P  ++E A   +  +++ I
Sbjct:  955 SETADILKQATPRSLVILDELGRGTSTHDGVAIAQAVLDYMVRTIRSLTLFITHYQHLSNMAQSFPDHELRNVHMRF---TESGSGKDEEITFLYEVGEGVAHRSYGLNVARLANLPAPLLEVARQKSSELEERI 1086          
BLAST of EY688710 vs. ExPASy Swiss-Prot
Match: MSH3_ASPFC (DNA mismatch repair protein msh3 OS=Aspergillus fumigatus (strain CEA10 / CBS 144.89 / FGSC A1163) GN=msh3 PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.467e-20
Identity = 58/135 (42.96%), Postives = 80/135 (59.26%), Query Frame = 2
Query:    2 TETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSI 406
            +ETA +L++AT  SLVILDELGRGTST DG AIA AV   +V  I    LF THY  L+    S P   L+++   F   +E+ S  D+E+ FLY +  G    SYGL VA +A +P  ++E A   +  +++ I
Sbjct:  955 SETADILKQATPRSLVILDELGRGTSTHDGVAIAQAVLDYMVRTIRSLTLFITHYQHLSNMAQSFPDHELRNVHMRF---TESGSGKDEEITFLYEVGEGVAHRSYGLNVARLANLPAPLLEVARQKSSELEERI 1086          
BLAST of EY688710 vs. ExPASy Swiss-Prot
Match: MUTS_SHESW (DNA mismatch repair protein mutS OS=Shewanella sp. (strain W3-18-1) GN=mutS PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.222e-20
Identity = 51/126 (40.48%), Postives = 77/126 (61.11%), Query Frame = 2
Query:    2 TETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASH 379
            TETA++L  AT  SLV++DE+GRGTST+DG ++A++    L ++I    LFATHY  LT+         L  +     +   +  + +  + F++ +  GA  +SYGLQVA +AGVP KV++AA H
Sbjct:  679 TETANILHNATAQSLVLMDEIGRGTSTYDGLSLAWSAAEYLAQQIGAMTLFATHYFELTQ---------LPDLMAGVYNVHLDAIEHEDTIAFMHAVQEGAASKSYGLQVAALAGVPAKVIKAAKH 795          
BLAST of EY688710 vs. ExPASy Swiss-Prot
Match: MUTS_SHEPC (DNA mismatch repair protein mutS OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=mutS PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.222e-20
Identity = 51/126 (40.48%), Postives = 77/126 (61.11%), Query Frame = 2
Query:    2 TETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASH 379
            TETA++L  AT  SLV++DE+GRGTST+DG ++A++    L ++I    LFATHY  LT+         L  +     +   +  + +  + F++ +  GA  +SYGLQVA +AGVP KV++AA H
Sbjct:  679 TETANILHNATAQSLVLMDEIGRGTSTYDGLSLAWSAAEYLAQQIGAMTLFATHYFELTQ---------LPDLMAGVYNVHLDAIEHEDTIAFMHAVQEGAASKSYGLQVAALAGVPAKVIKAAKH 795          
BLAST of EY688710 vs. ExPASy Swiss-Prot
Match: MUTS_SHEPA (DNA mismatch repair protein mutS OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1) GN=mutS PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.222e-20
Identity = 55/145 (37.93%), Postives = 86/145 (59.31%), Query Frame = 2
Query:    2 TETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSIGESFKSSEQR 436
            TETA++L  AT +SLV++DE+GRGTST+DG ++A++    L +++    LFATHY  LT+      +V   H+        +    GD  +VF++ +  GA   SYGLQVA +AGVP  V+ AA H    ++    +  +++EQ+
Sbjct:  679 TETANILHNATPNSLVLMDEIGRGTSTYDGLSLAWSAAEYLAKQLQAMTLFATHYFELTQLPEQLSNVENVHL--------DAVEHGD-SIVFMHAVQEGAASRSYGLQVAALAGVPNCVISAAKHKLHQLESRDHDVQQNTEQQ 814          
BLAST of EY688710 vs. ExPASy Swiss-Prot
Match: MUTS_RHOPA (DNA mismatch repair protein mutS OS=Rhodopseudomonas palustris GN=mutS PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.222e-20
Identity = 54/123 (43.90%), Postives = 76/123 (61.79%), Query Frame = 2
Query:    5 ETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAA 373
            ETA++L +A++ +LVILDE+GRGT+TFDG +IA+A    L E+  CR LFATHYH LT   A  P +          + +    +   E+VFL+ +  G+   SYG+QVA +AG+P  VV  A
Sbjct:  718 ETAAILNQASERALVILDEIGRGTATFDGLSIAWAAIEHLHEQNRCRSLFATHYHELTALSAKLPRLF---------NATVRVKEWRGEVVFLHEVLPGSADRSYGIQVAKLAGLPPSVVSRA 831          
BLAST of EY688710 vs. ExPASy Swiss-Prot
Match: MUTS_LEGPH (DNA mismatch repair protein mutS OS=Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) GN=mutS PE=3 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 3.222e-20
Identity = 56/127 (44.09%), Postives = 80/127 (62.99%), Query Frame = 2
Query:    2 TETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLT---KEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAA 373
            TETA +L++AT  SLV++DE+GRGTST+DG A+AYA    L   I    LF+THY  LT   KEF+   +V   H+  + K+          ++VFLYR+  G    SYGL+VA +AG+P++V++ A
Sbjct:  671 TETAQILRQATSQSLVLIDEIGRGTSTYDGMALAYASCAFLASTIKAYTLFSTHYLELTELPKEFSCIRNV---HLQASIKTG---------QIVFLYRVEEGCANRSYGLEVAELAGIPKEVLKLA 785          
BLAST of EY688710 vs. ExPASy Swiss-Prot
Match: MUTS_LEGPC (DNA mismatch repair protein mutS OS=Legionella pneumophila (strain Corby) GN=mutS PE=3 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 3.222e-20
Identity = 56/127 (44.09%), Postives = 80/127 (62.99%), Query Frame = 2
Query:    2 TETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLT---KEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAA 373
            TETA +L++AT  SLV++DE+GRGTST+DG A+AYA    L   I    LF+THY  LT   KEF+   +V   H+  + K+          ++VFLYR+  G    SYGL+VA +AG+P++V++ A
Sbjct:  671 TETAQILRQATSQSLVLIDEIGRGTSTYDGMALAYASCAFLASTIKAYTLFSTHYLELTELPKEFSCIRNV---HLQASIKTG---------QIVFLYRVEEGCANRSYGLEVAELAGIPKEVLKLA 785          
BLAST of EY688710 vs. ExPASy Swiss-Prot
Match: MUTS_LEGPA (DNA mismatch repair protein mutS OS=Legionella pneumophila (strain Paris) GN=mutS PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.222e-20
Identity = 56/127 (44.09%), Postives = 80/127 (62.99%), Query Frame = 2
Query:    2 TETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLT---KEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAA 373
            TETA +L++AT  SLV++DE+GRGTST+DG A+AYA    L   I    LF+THY  LT   KEF+   +V   H+  + K+          ++VFLYR+  G    SYGL+VA +AG+P++V++ A
Sbjct:  671 TETAQILRQATSQSLVLIDEIGRGTSTYDGMALAYASCAFLASTIKAYTLFSTHYLELTELPKEFSCIRNV---HLQASIKTG---------QIVFLYRVEEGCANRSYGLEVAELAGIPKEVLKLA 785          
BLAST of EY688710 vs. ExPASy Swiss-Prot
Match: MUTS_BARHE (DNA mismatch repair protein mutS OS=Bartonella henselae GN=mutS PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.222e-20
Identity = 59/169 (34.91%), Postives = 90/169 (53.25%), Query Frame = 2
Query:    5 ETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKK-----------------SIGESFKSSEQRSEFSSLHE 460
            ETA++L  ATQ SLVILDE+GRGTSTFDG +IA+A    L E  +CR + ATH+H +T          L        + +      D +++FL+ +T GA   SYG+QVA +AG+P+ V+  A+     +++                 S+  +   +E  +++S LHE
Sbjct:  724 ETATILNHATQHSLVILDEIGRGTSTFDGLSIAWATVEYLHEVNHCRAILATHFHEMT---------ALTEKLDRLHNVTMKVKNWDGDVIFLHEVTPGAADRSYGVQVAKLAGLPKAVITRATDVLQQLEQGEMAGKGHKLIDDLPLFSLKTTSSLNEDTNKYSMLHE 883          
The following BLAST results are available for this feature:
BLAST of EY688710 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
MSH3_ASPFU2.467e-2042.96DNA mismatch repair protein msh3 OS=Aspergillus fu... [more]
MSH3_ASPFC2.467e-2042.96DNA mismatch repair protein msh3 OS=Aspergillus fu... [more]
MUTS_SHESW3.222e-2040.48DNA mismatch repair protein mutS OS=Shewanella sp.... [more]
MUTS_SHEPC3.222e-2040.48DNA mismatch repair protein mutS OS=Shewanella put... [more]
MUTS_SHEPA3.222e-2037.93DNA mismatch repair protein mutS OS=Shewanella pea... [more]
MUTS_RHOPA3.222e-2043.90DNA mismatch repair protein mutS OS=Rhodopseudomon... [more]
MUTS_LEGPH3.222e-2044.09DNA mismatch repair protein mutS OS=Legionella pne... [more]
MUTS_LEGPC3.222e-2044.09DNA mismatch repair protein mutS OS=Legionella pne... [more]
MUTS_LEGPA3.222e-2044.09DNA mismatch repair protein mutS OS=Legionella pne... [more]
MUTS_BARHE3.222e-2034.91DNA mismatch repair protein mutS OS=Bartonella hen... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C2-003-091-F07-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY688710 ID=EY688710; Name=EY688710; organism=Citrus sinensis; type=EST; length=679bp
CACAGAGACGGCATCAGTTCTTCAGAAAGCCACTCAAGATTCTCTGGTAA
TTCTTGATGAACTGGGTCGAGGAACAAGCACTTTTGATGGATATGCCATT
GCCTACGCTGTATTCCGCCAACTTGTTGAAAGGATCAATTGTCGGTTGCT
ATTTGCAACACATTACCATCCACTCACAAAAGAATTTGCTTCTCATCCGC
ATGTTACTCTACAACATATGGCTTGTGCTTTCAAGTCAAACTCTGAAAAC
TATTCGAAAGGTGATCAAGAGCTGGTTTTTCTCTACCGCCTTACTTCCGG
AGCATGCCCAGAGAGCTATGGGTTGCAAGTGGCTGTAATGGCTGGGGTTC
CACAAAAGGTGGTTGAGGCAGCATCACATGCTGCTCTAGCAATGAAAAAA
TCAATAGGAGAAAGTTTCAAGTCGAGTGAACAGAGATCAGAGTTCTCAAG
TCTCCATGAAGAGTGGTTGAAGACCATTGTAAATGTCTCAAGGGTTGATT
GTAATTCCGATGATGATGATGCTTATGACACATTGTTTTGTTTGTGGCAT
GAGCTAAAGAATTCATATCAGTTGCACAACTAAAAGAGAAGGTGGCAAAG
ATAATGATTGCTACATGACTTTGCCTAATTGCCTTAATCAATTTTTCTTT
GTGTAAAAAAAAAAAAAAAAAAAAAAAAA
back to top