EY688710

Overview
NameEY688710
Unique NameEY688710
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length679
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY688710_ssr509 microsatellite EY688710_ssr509:509..520. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig9088 contig Csv1_Contig9088:12..690. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY688710 vs. ExPASy Swiss-Prot
Match: MUTS_ACIBC (DNA mismatch repair protein mutS OS=Acinetobacter baumannii (strain ACICU) GN=mutS PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.308e-21
Identity = 56/154 (36.36%), Postives = 88/154 (57.14%), Query Frame = 2
Query:    2 TETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSIGESFKSSEQRSEFSSLHEE 463
            TET+ +L  AT  SLV++DE+GRGTST+DG ++A+A    L +R+ C  LFATHY  LT E  S P +   H+            + +  L+ L+++  G   +S+GLQVA +AG+P  V++ A      ++K   +  ++S Q   F++L  E
Sbjct:  688 TETSQILHHATNQSLVLMDEVGRGTSTYDGLSLAWACVVDLTKRVKCLCLFATHYFELT-ELGSEPGIDNYHVTA---------QELNGNLILLHKVQQGPASQSHGLQVAKLAGIPANVIKEAQKRLRILEKQQQQHLQTSVQSDLFATLDSE 831          
BLAST of EY688710 vs. ExPASy Swiss-Prot
Match: MUTS_ACIB5 (DNA mismatch repair protein mutS OS=Acinetobacter baumannii (strain AB0057) GN=mutS PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.308e-21
Identity = 56/154 (36.36%), Postives = 88/154 (57.14%), Query Frame = 2
Query:    2 TETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSIGESFKSSEQRSEFSSLHEE 463
            TET+ +L  AT  SLV++DE+GRGTST+DG ++A+A    L +R+ C  LFATHY  LT E  S P +   H+            + +  L+ L+++  G   +S+GLQVA +AG+P  V++ A      ++K   +  ++S Q   F++L  E
Sbjct:  688 TETSQILHHATNQSLVLMDEVGRGTSTYDGLSLAWACVVDLTKRVKCLCLFATHYFELT-ELGSEPGIDNYHVTA---------QELNGNLILLHKVQQGPASQSHGLQVAKLAGIPANVIKEAQKRLRILEKQQQQHLQTSVQSDLFATLDSE 831          
BLAST of EY688710 vs. ExPASy Swiss-Prot
Match: MUTS_ACIB3 (DNA mismatch repair protein mutS OS=Acinetobacter baumannii (strain AB307-0294) GN=mutS PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.308e-21
Identity = 56/154 (36.36%), Postives = 88/154 (57.14%), Query Frame = 2
Query:    2 TETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSIGESFKSSEQRSEFSSLHEE 463
            TET+ +L  AT  SLV++DE+GRGTST+DG ++A+A    L +R+ C  LFATHY  LT E  S P +   H+            + +  L+ L+++  G   +S+GLQVA +AG+P  V++ A      ++K   +  ++S Q   F++L  E
Sbjct:  688 TETSQILHHATNQSLVLMDEVGRGTSTYDGLSLAWACVVDLTKRVKCLCLFATHYFELT-ELGSEPGIDNYHVTA---------QELNGNLILLHKVQQGPASQSHGLQVAKLAGIPANVIKEAQKRLRILEKQQQQHLQTSVQSDLFATLDSE 831          
BLAST of EY688710 vs. ExPASy Swiss-Prot
Match: MUTS_CHRVO (DNA mismatch repair protein mutS OS=Chromobacterium violaceum GN=mutS PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.708e-21
Identity = 56/129 (43.41%), Postives = 79/129 (61.24%), Query Frame = 2
Query:    2 TETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVV-EAASHAA 385
            TETA++L  A++ SLV++DE+GRGTSTFDG A+A+A+ R L+E+     LFATHY  LT     +P V   H++           +    +VFL+ +  G   +SYGL VA +AGVP KV+ +A  H A
Sbjct:  696 TETANILNNASEHSLVLMDEVGRGTSTFDGLALAWAIARALIEKNRAYTLFATHYFELTTLAGEYPAVANVHLSAV---------EHKDRIVFLHHVEDGPASQSYGLAVAQLAGVPAKVIRDARRHLA 815          
BLAST of EY688710 vs. ExPASy Swiss-Prot
Match: MUTS_BURTA (DNA mismatch repair protein mutS OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=mutS PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.708e-21
Identity = 58/139 (41.73%), Postives = 81/139 (58.27%), Query Frame = 2
Query:    2 TETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAA-SHAALAMKKSIGES 415
            TE A++L  AT  SLV++DE+GRGTSTFDG A+A+A+ R L+    C  LFATHY  LT+  A  P     H++     +          +VFL+ +  G   +SYGLQVA +AGVP  V+ AA  H A   ++S  ++
Sbjct:  698 TEAAAILNDATPQSLVLMDEIGRGTSTFDGLALAWAIARHLLSHNRCYTLFATHYFELTQLPAEFPQAANVHLSAVEHGHG---------IVFLHAVEEGPANQSYGLQVAQLAGVPAPVIRAARKHLAHLEQQSAAQA 827          
BLAST of EY688710 vs. ExPASy Swiss-Prot
Match: MUTS_AZOSE (DNA mismatch repair protein mutS OS=Azoarcus sp. (strain EbN1) GN=mutS PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.708e-21
Identity = 52/132 (39.39%), Postives = 79/132 (59.85%), Query Frame = 2
Query:    2 TETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMK 397
            TE +++L  AT+ SLV++DE+GRGTSTFDG A+A+A+ R L+E+  C  LFATHY  LT+    +P     H+     ++          +VFL+ +  G   +SYG++VA +AG+P  VV  A     A++
Sbjct:  700 TEASAILHGATEQSLVLMDEIGRGTSTFDGLALAFAIARHLLEKNRCLTLFATHYFELTRLNGDYPECANVHLDAVEHAH---------RIVFLHAVEDGPASQSYGIEVAALAGIPGSVVREAKRRLRALE 822          
BLAST of EY688710 vs. ExPASy Swiss-Prot
Match: MUTS_THIDA (DNA mismatch repair protein mutS OS=Thiobacillus denitrificans (strain ATCC 25259) GN=mutS PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.231e-21
Identity = 57/124 (45.97%), Postives = 76/124 (61.29%), Query Frame = 2
Query:    2 TETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAA 373
            TETA++L  AT DSLV+LDE+GRGTSTFDG A+A+AV R LV       LFATHY  LT+    +  +   H+         +  +   +LVFL+ +  G   +SYG+QVA +AGVP  V+ AA
Sbjct:  669 TETANILHSATADSLVLLDEIGRGTSTFDGLALAWAVARHLVSATRAFTLFATHYFELTQLAQEYRQLANVHL---------DAKEHGADLVFLHAVEDGPASQSYGIQVARLAGVPGPVIHAA 783          
BLAST of EY688710 vs. ExPASy Swiss-Prot
Match: MUTS_PROM9 (DNA mismatch repair protein mutS OS=Prochlorococcus marinus (strain MIT 9312) GN=mutS PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.231e-21
Identity = 49/124 (39.52%), Postives = 82/124 (66.13%), Query Frame = 2
Query:    2 TETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAA 373
            +ETAS+L +AT  SLV+LDE+GRGTSTFDG +IA++V   L ++I C  +FATHYH L   +  + +  +++     + N++       +++F +++  G   +SYG++ A +AGVP++V+E A
Sbjct:  781 SETASILNQATSSSLVLLDEIGRGTSTFDGLSIAWSVSEYLAKKIKCNTIFATHYHEL--NYLKNSNKNIENFQVLVEQNND-------QIIFSHKIKKGGSNKSYGIEAAKLAGVPREVIEKA 895          
BLAST of EY688710 vs. ExPASy Swiss-Prot
Match: MUTS_NITOC (DNA mismatch repair protein mutS OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=mutS PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.231e-21
Identity = 54/134 (40.30%), Postives = 80/134 (59.70%), Query Frame = 2
Query:    2 TETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKS 403
            TETA++L  AT+ SLV+LDE+GRGTSTFDG ++A+AV   L  ++    LFATHY  LT      P V   H+           ++  + +VFL+ +  G   +SYGLQVA +AGVPQ+++  A    + ++ +
Sbjct:  681 TETANILHNATEHSLVLLDEVGRGTSTFDGLSLAWAVVSHLANKVRSLTLFATHYFELTTLPECLPGVVNLHLTA---------TEHKEHIVFLHAVKEGPASQSYGLQVAALAGVPQEIIAQARQQLMELENN 805          
BLAST of EY688710 vs. ExPASy Swiss-Prot
Match: MUTS_NITMU (DNA mismatch repair protein mutS OS=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) GN=mutS PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.231e-21
Identity = 65/171 (38.01%), Postives = 93/171 (54.39%), Query Frame = 2
Query:    2 TETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTK---EFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSIGESFKSSEQRSEFSSLHEEWLKTIVNVSRVDCN 505
            TE A++L  AT  SLV++DE+GRGTSTFDG A+A+A+ R L+E+     LFATHY  LT+   EFA   +V L+ +            +    +VFL+ +  G   +SYGLQVA +AGVP  V+  A    L +++   E+  +  Q   FS     W +  +    VD N
Sbjct:  708 TEAANILHNATAQSLVLMDEVGRGTSTFDGLALAFAIARYLLEKNRSYTLFATHYFELTRLAEEFAQVANVHLRAV------------EHKHHIVFLHAVNEGPASQSYGLQVAALAGVPDPVIRTARRYLLKLEQ---EALSNQPQGDLFSRDDLFWKQDRMPEGSVDKN 863          
The following BLAST results are available for this feature:
BLAST of EY688710 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
MUTS_ACIBC1.308e-2136.36DNA mismatch repair protein mutS OS=Acinetobacter ... [more]
MUTS_ACIB51.308e-2136.36DNA mismatch repair protein mutS OS=Acinetobacter ... [more]
MUTS_ACIB31.308e-2136.36DNA mismatch repair protein mutS OS=Acinetobacter ... [more]
MUTS_CHRVO1.708e-2143.41DNA mismatch repair protein mutS OS=Chromobacteriu... [more]
MUTS_BURTA1.708e-2141.73DNA mismatch repair protein mutS OS=Burkholderia t... [more]
MUTS_AZOSE1.708e-2139.39DNA mismatch repair protein mutS OS=Azoarcus sp. (... [more]
MUTS_THIDA2.231e-2145.97DNA mismatch repair protein mutS OS=Thiobacillus d... [more]
MUTS_PROM92.231e-2139.52DNA mismatch repair protein mutS OS=Prochlorococcu... [more]
MUTS_NITOC2.231e-2140.30DNA mismatch repair protein mutS OS=Nitrosococcus ... [more]
MUTS_NITMU2.231e-2138.01DNA mismatch repair protein mutS OS=Nitrosospira m... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-091-F07-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY688710 ID=EY688710; Name=EY688710; organism=Citrus sinensis; type=EST; length=679bp
CACAGAGACGGCATCAGTTCTTCAGAAAGCCACTCAAGATTCTCTGGTAA
TTCTTGATGAACTGGGTCGAGGAACAAGCACTTTTGATGGATATGCCATT
GCCTACGCTGTATTCCGCCAACTTGTTGAAAGGATCAATTGTCGGTTGCT
ATTTGCAACACATTACCATCCACTCACAAAAGAATTTGCTTCTCATCCGC
ATGTTACTCTACAACATATGGCTTGTGCTTTCAAGTCAAACTCTGAAAAC
TATTCGAAAGGTGATCAAGAGCTGGTTTTTCTCTACCGCCTTACTTCCGG
AGCATGCCCAGAGAGCTATGGGTTGCAAGTGGCTGTAATGGCTGGGGTTC
CACAAAAGGTGGTTGAGGCAGCATCACATGCTGCTCTAGCAATGAAAAAA
TCAATAGGAGAAAGTTTCAAGTCGAGTGAACAGAGATCAGAGTTCTCAAG
TCTCCATGAAGAGTGGTTGAAGACCATTGTAAATGTCTCAAGGGTTGATT
GTAATTCCGATGATGATGATGCTTATGACACATTGTTTTGTTTGTGGCAT
GAGCTAAAGAATTCATATCAGTTGCACAACTAAAAGAGAAGGTGGCAAAG
ATAATGATTGCTACATGACTTTGCCTAATTGCCTTAATCAATTTTTCTTT
GTGTAAAAAAAAAAAAAAAAAAAAAAAAA
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