EY688710

Overview
NameEY688710
Unique NameEY688710
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length679
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY688710_ssr509 microsatellite EY688710_ssr509:509..520. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig9088 contig Csv1_Contig9088:12..690. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY688710 vs. ExPASy Swiss-Prot
Match: MUTS_BURM7 (DNA mismatch repair protein mutS OS=Burkholderia mallei (strain NCTC 10247) GN=mutS PE=3 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 2.231e-21
Identity = 58/139 (41.73%), Postives = 81/139 (58.27%), Query Frame = 2
Query:    2 TETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAA-SHAALAMKKSIGES 415
            TE A++L  AT  SLV++DE+GRGTSTFDG A+A+A+ R L+    C  LFATHY  LT+  A  P     H++     +          +VFL+ +  G   +SYGLQVA +AGVP  V+ AA  H A   ++S  ++
Sbjct:  695 TEAAAILNDATPHSLVLMDEIGRGTSTFDGLALAWAIARHLLSHNRCYTLFATHYFELTQLPAEFPQAANVHLSAVEHGHG---------IVFLHAVEEGPANQSYGLQVAQLAGVPAPVIRAARKHLAHLEQQSAAQA 824          
BLAST of EY688710 vs. ExPASy Swiss-Prot
Match: MUTS_BURCJ (DNA mismatch repair protein mutS OS=Burkholderia cepacia (strain J2315 / LMG 16656) GN=mutS PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.231e-21
Identity = 58/138 (42.03%), Postives = 80/138 (57.97%), Query Frame = 2
Query:    2 TETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAA-SHAALAMKKSIGE 412
            TE A++L  AT  SLV++DE+GRGTSTFDG A+A+A+ R L+    C  LFATHY  LT+  A  P     H++     +          +VFL+ +  G   +SYGLQVA +AGVP  V+ AA  H A   ++S  +
Sbjct:  687 TEAAAILNDATPQSLVLMDEIGRGTSTFDGLALAWAIARHLLAHNACYTLFATHYFELTQLPAEFPQAANVHLSAVEHGHG---------IVFLHAVNEGPANQSYGLQVAQLAGVPAPVIRAARKHLAYLEQQSASQ 815          
BLAST of EY688710 vs. ExPASy Swiss-Prot
Match: MUTS_BURCH (DNA mismatch repair protein mutS OS=Burkholderia cenocepacia (strain HI2424) GN=mutS PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.231e-21
Identity = 58/138 (42.03%), Postives = 80/138 (57.97%), Query Frame = 2
Query:    2 TETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAA-SHAALAMKKSIGE 412
            TE A++L  AT  SLV++DE+GRGTSTFDG A+A+A+ R L+    C  LFATHY  LT+  A  P     H++     +          +VFL+ +  G   +SYGLQVA +AGVP  V+ AA  H A   ++S  +
Sbjct:  687 TEAAAILNDATPQSLVLMDEIGRGTSTFDGLALAWAIARHLLAHNACYTLFATHYFELTQLPAEFPQAANVHLSAVEHGHG---------IVFLHAVNEGPANQSYGLQVAQLAGVPAPVIRAARKHLAYLEQQSASQ 815          
BLAST of EY688710 vs. ExPASy Swiss-Prot
Match: MUTS_BURCC (DNA mismatch repair protein mutS OS=Burkholderia cenocepacia (strain MC0-3) GN=mutS PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.231e-21
Identity = 58/138 (42.03%), Postives = 80/138 (57.97%), Query Frame = 2
Query:    2 TETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAA-SHAALAMKKSIGE 412
            TE A++L  AT  SLV++DE+GRGTSTFDG A+A+A+ R L+    C  LFATHY  LT+  A  P     H++     +          +VFL+ +  G   +SYGLQVA +AGVP  V+ AA  H A   ++S  +
Sbjct:  687 TEAAAILNDATPQSLVLMDEIGRGTSTFDGLALAWAIARHLLAHNACYTLFATHYFELTQLPAEFPQAANVHLSAVEHGHG---------IVFLHAVNEGPANQSYGLQVAQLAGVPAPVIRAARKHLAYLEQQSASQ 815          
BLAST of EY688710 vs. ExPASy Swiss-Prot
Match: MUTS_BURCA (DNA mismatch repair protein mutS OS=Burkholderia cenocepacia (strain AU 1054) GN=mutS PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.231e-21
Identity = 58/138 (42.03%), Postives = 80/138 (57.97%), Query Frame = 2
Query:    2 TETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAA-SHAALAMKKSIGE 412
            TE A++L  AT  SLV++DE+GRGTSTFDG A+A+A+ R L+    C  LFATHY  LT+  A  P     H++     +          +VFL+ +  G   +SYGLQVA +AGVP  V+ AA  H A   ++S  +
Sbjct:  687 TEAAAILNDATPQSLVLMDEIGRGTSTFDGLALAWAIARHLLAHNACYTLFATHYFELTQLPAEFPQAANVHLSAVEHGHG---------IVFLHAVNEGPANQSYGLQVAQLAGVPAPVIRAARKHLAYLEQQSASQ 815          
BLAST of EY688710 vs. ExPASy Swiss-Prot
Match: MSH2_BOVIN (DNA mismatch repair protein Msh2 OS=Bos taurus GN=MSH2 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.231e-21
Identity = 51/132 (38.64%), Postives = 79/132 (59.85%), Query Frame = 2
Query:    5 ETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKK 400
            ETAS+L+ AT+DSL+I+DELGRGTST+DG+ +A+A+   +  +I    +FATH+H LT      P V   H+              ++ L  LY++  G C +S+G+ VA +A  P+ V+E A   AL +++
Sbjct:  731 ETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTALANQIPTVNNLHVTAL---------TTEETLTMLYQVKKGVCDQSFGIHVAELANFPRHVIECAKQKALELEE 853          
BLAST of EY688710 vs. ExPASy Swiss-Prot
Match: MUTS_TREPS (DNA mismatch repair protein mutS OS=Treponema pallidum subsp. pallidum (strain SS14) GN=mutS PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.914e-21
Identity = 56/142 (39.44%), Postives = 89/142 (62.68%), Query Frame = 2
Query:    2 TETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSIGESFKSS 427
            +ETA +L+ AT+DSLVI+DE+GRGT+T DG +IA AV   L+  +  + LFATHYH L++   +HP   L+H+         +  + D  +VFL ++T G+C  SYG+ VA +AG+P+ V+  A      +++  G + ++S
Sbjct:  687 SETAHILRAATRDSLVIMDEVGRGTATEDGLSIAQAVSEYLLHHVRAKTLFATHYHELSR--LAHPQ--LEHLKL-------DVLETDNTIVFLKKVTPGSCGSSYGIYVARLAGLPESVLARACELLKQLQQRAGSAPRAS 817          
BLAST of EY688710 vs. ExPASy Swiss-Prot
Match: MUTS_TREPA (DNA mismatch repair protein mutS OS=Treponema pallidum GN=mutS PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.914e-21
Identity = 56/142 (39.44%), Postives = 89/142 (62.68%), Query Frame = 2
Query:    2 TETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSIGESFKSS 427
            +ETA +L+ AT+DSLVI+DE+GRGT+T DG +IA AV   L+  +  + LFATHYH L++   +HP   L+H+         +  + D  +VFL ++T G+C  SYG+ VA +AG+P+ V+  A      +++  G + ++S
Sbjct:  687 SETAHILRAATRDSLVIMDEVGRGTATEDGLSIAQAVSEYLLHHVRAKTLFATHYHELSR--LAHPQ--LEHLKL-------DVLETDNTIVFLKKVTPGSCGSSYGIYVARLAGLPESVLARACELLKQLQQRAGSAPRAS 817          
BLAST of EY688710 vs. ExPASy Swiss-Prot
Match: MUTS_SHEAM (DNA mismatch repair protein mutS OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=mutS PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.914e-21
Identity = 53/132 (40.15%), Postives = 81/132 (61.36%), Query Frame = 2
Query:    2 TETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMK 397
            TETA++L  AT +SLV++DE+GRGTST+DG ++A++    L +++    LFATHY  LT+     P V   H+         +  + D  + F++ +  GA  +SYGLQVA +AGVP  V++AA H  L ++
Sbjct:  679 TETANILHNATANSLVLMDEIGRGTSTYDGMSLAWSAAEYLAQKLGAMTLFATHYFELTQLPEMLPGVHNVHL---------DAIEHDDTIAFMHAVQEGAASKSYGLQVAALAGVPANVIKAAKHKLLQLE 801          
BLAST of EY688710 vs. ExPASy Swiss-Prot
Match: MUTS_MARMS (DNA mismatch repair protein mutS OS=Marinomonas sp. (strain MWYL1) GN=mutS PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.914e-21
Identity = 62/171 (36.26%), Postives = 99/171 (57.89%), Query Frame = 2
Query:    2 TETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTK-----EFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASH--AALAMKKSIGESFKSSEQRSEFSSLHEEWLKTIVNVSR 493
            TETA++L  A+++SLV++DE+GRGTSTFDG ++A+A    L  ++ C +LFATHY  LT      E A++ H+T               ++ + E+VFL+++  G   +SYGLQVA +AGVP+ V+  A      L +   I    K+ E ++  SS+  +  + +V  S+
Sbjct:  680 TETANILNNASKNSLVLMDEVGRGTSTFDGLSLAWAAVDYLANKLKCYVLFATHYFELTTLADQLENAANVHLTA--------------TEYEDEIVFLHKVHEGPASQSYGLQVAQLAGVPRDVIGHAKQKLKELEVVTGIDLDTKTIETKANSSSIKAKTKEHLVKESK 836          
The following BLAST results are available for this feature:
BLAST of EY688710 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
MUTS_BURM72.231e-2141.73DNA mismatch repair protein mutS OS=Burkholderia m... [more]
MUTS_BURCJ2.231e-2142.03DNA mismatch repair protein mutS OS=Burkholderia c... [more]
MUTS_BURCH2.231e-2142.03DNA mismatch repair protein mutS OS=Burkholderia c... [more]
MUTS_BURCC2.231e-2142.03DNA mismatch repair protein mutS OS=Burkholderia c... [more]
MUTS_BURCA2.231e-2142.03DNA mismatch repair protein mutS OS=Burkholderia c... [more]
MSH2_BOVIN2.231e-2138.64DNA mismatch repair protein Msh2 OS=Bos taurus GN=... [more]
MUTS_TREPS2.914e-2139.44DNA mismatch repair protein mutS OS=Treponema pall... [more]
MUTS_TREPA2.914e-2139.44DNA mismatch repair protein mutS OS=Treponema pall... [more]
MUTS_SHEAM2.914e-2140.15DNA mismatch repair protein mutS OS=Shewanella ama... [more]
MUTS_MARMS2.914e-2136.26DNA mismatch repair protein mutS OS=Marinomonas sp... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-091-F07-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY688710 ID=EY688710; Name=EY688710; organism=Citrus sinensis; type=EST; length=679bp
CACAGAGACGGCATCAGTTCTTCAGAAAGCCACTCAAGATTCTCTGGTAA
TTCTTGATGAACTGGGTCGAGGAACAAGCACTTTTGATGGATATGCCATT
GCCTACGCTGTATTCCGCCAACTTGTTGAAAGGATCAATTGTCGGTTGCT
ATTTGCAACACATTACCATCCACTCACAAAAGAATTTGCTTCTCATCCGC
ATGTTACTCTACAACATATGGCTTGTGCTTTCAAGTCAAACTCTGAAAAC
TATTCGAAAGGTGATCAAGAGCTGGTTTTTCTCTACCGCCTTACTTCCGG
AGCATGCCCAGAGAGCTATGGGTTGCAAGTGGCTGTAATGGCTGGGGTTC
CACAAAAGGTGGTTGAGGCAGCATCACATGCTGCTCTAGCAATGAAAAAA
TCAATAGGAGAAAGTTTCAAGTCGAGTGAACAGAGATCAGAGTTCTCAAG
TCTCCATGAAGAGTGGTTGAAGACCATTGTAAATGTCTCAAGGGTTGATT
GTAATTCCGATGATGATGATGCTTATGACACATTGTTTTGTTTGTGGCAT
GAGCTAAAGAATTCATATCAGTTGCACAACTAAAAGAGAAGGTGGCAAAG
ATAATGATTGCTACATGACTTTGCCTAATTGCCTTAATCAATTTTTCTTT
GTGTAAAAAAAAAAAAAAAAAAAAAAAAA
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