EY688705

Overview
NameEY688705
Unique NameEY688705
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length839
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY688705 vs. ExPASy Swiss-Prot
Match: TCPD_ENCCU (T-complex protein 1 subunit delta OS=Encephalitozoon cuniculi GN=CCT4 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.070e-12
Identity = 43/153 (28.10%), Postives = 78/153 (50.98%), Query Frame = 2
Query:   23 CTVLLEGASKDLLNEVERNLQDAMSVARNIINNPKLIPGGGATKLTVSATLKQKSSSI*GIQKWPYESAAIAFDAIPRTLAQNCGVNVIQTMTALQRKHANGENAWIGIDGNTGAISDM-KEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIV 478
            CT+LL G    ++ E ER+L DA+ V + +   P L+PGGG+ ++ ++  L + +        +     A AF+ +P  LA+N G+  ++ ++ L+ +    +N   GI   +G   DM ++  +     V       A+E   M+L+IDDI+
Sbjct:  334 CTILLRGCDDMVVEEAERSLNDALCVVKCLKELPFLVPGGGSIEMGIALMLSESTEG----NIYVLREIAKAFEGVPYFLARNAGLYPVEIVSELRSELK--QNCCAGISVRSGHAGDMVRDDSVVQPAKVSISVVTLALETVSMILKIDDIL 480          
BLAST of EY688705 vs. ExPASy Swiss-Prot
Match: TCPA_DROME (T-complex protein 1 subunit alpha OS=Drosophila melanogaster GN=T-cp1 PE=2 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 6.070e-12
Identity = 40/158 (25.32%), Postives = 81/158 (51.27%), Query Frame = 2
Query:   26 TVLLEGASKDLLNEVERNLQDAMSVARNIINNPKLIPGGGATKLTVSATLKQKSSSI*GIQKWPYESAAIAFDAIPRTLAQNCGVNVIQTMTALQRKHANGEN-------AWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIV 478
            +++L G +    +E+ER++ DA+ V + ++ + K++ GGG  +  +S  L+  ++S+   ++      A +   IP+TL+ N   +    +  L+  H + +         W G+D   G + D K+  + +    K ++ K A EAA  +LRIDD++
Sbjct:  377 SIILRGPNDFYCDEMERSVHDALCVVKRVLESKKVVAGGGCVEAALSIYLENFATSLASREQLAIAEFAKSLLVIPKTLSVNAAKDATDLVAKLRSYHNSSQTKPERSDLKWTGLDLIEGVVRDNKKAGVLEPAMSKIKSLKFATEAAITILRIDDMI 534          
BLAST of EY688705 vs. ExPASy Swiss-Prot
Match: TCPZ_SCHPO (T-complex protein 1 subunit zeta OS=Schizosaccharomyces pombe GN=cct6 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.012e-11
Identity = 48/174 (27.59%), Postives = 81/174 (46.55%), Query Frame = 2
Query:    2 DCKDPKPCTVLLEGASKDLLNEVERNLQDAMSVARNIINNPKLIPGGGATKLTVSATLKQK--SSSI*GIQKWPYESAAIAFDAIPRTLAQNCGVNVIQTMTALQRKHANGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIKKKQAPGSRQ 517
            D KDPK  T+L+ G +   + +++   +D +   +N + +  LI G GA ++  +A L+ K  +  + G  K    + A A   IP+TLA N   +    + ALQ + + G    +G+D  TG   D +   I+D Y V      +A   A  L+ +D I+   +     G  Q
Sbjct:  364 DVKDPKSATILIHGPNTYTIQQIQDATRDGLRAVKNAVEDNCLIVGAGAFEVACAAHLRNKFAAKEVKGKAKMGVYAYADALLIIPKTLAANSSYDTQDAIVALQEEASEGYK--VGLDLKTGMPFDPEVEGIYDNYRVIRHMLHSATVIASNLISVDQILRAGRSSLKEGPPQ 535          
The following BLAST results are available for this feature:
BLAST of EY688705 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 143
Match NameE-valueIdentityDescription
TCPD_ENCCU6.070e-1228.10T-complex protein 1 subunit delta OS=Encephalitozo... [more]
TCPA_DROME6.070e-1225.32T-complex protein 1 subunit alpha OS=Drosophila me... [more]
TCPZ_SCHPO3.012e-1127.59T-complex protein 1 subunit zeta OS=Schizosaccharo... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-091-E11-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY688705 ID=EY688705; Name=EY688705; organism=Citrus sinensis; type=EST; length=839bp
TGATTGCAAAGATCCAAAACCTTGTACTGTACTCTTAGAAGGTGCTAGTA
AGGATCTCCTGAATGAAGTGGAAAGGAATTTGCAGGATGCAATGTCTGTG
GCAAGAAACATAATCAATAATCCAAAACTAATACCTGGTGGTGGGGCTAC
AAAATTAACAGTGTCTGCCACTCTAAAACAAAAGAGTTCCTCAATCTAAG
GCATCCAAAAGTGGCCTTACGAATCTGCTGCTATTGCTTTTGACGCTATT
CCAAGAACTTTGGCTCAAAATTGTGGCGTTAATGTAATTCAGACTATGAC
TGCTCTGCAAAGAAAACATGCAAATGGTGAAAATGCATGGATTGGCATAG
ATGGAAACACTGGTGCAATTTCTGACATGAAAGAGGGGAAGATCTGGGAT
GCATATAATGTGAAAGCACAGACATTTAAGACAGCAATTGAAGCTGCTTG
CATGCTTCTGAGGATTGATGACATTGTCAGTGGAATTAAGAAGAAACAGG
CCCCTGGCTCACGCCAAGCTCCATCGAAGCCCCAGATTGAGACGGAGGCA
GATGCAGATAGTGAGCAAATACTCCATGATTAGACAATGTTATTGTCAAC
GACTATGCAGTTTAATTATTTGAAAAAATGTTGGTTTATTGTTCTGTTGG
CGGCCTAATGATTTTGCTGAGCTTTTCCTCCAAATTTTGTGATATTGCCC
CCATGTTTTACCCCTTGTAAAAAAATGGGGAAGCTGTGATATGCTCTGCA
AAATATATAATATATTTTTAAATCCCTGTTTTAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAGGCCGGGCCCTTTTAAAG
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