EY688705

Overview
NameEY688705
Unique NameEY688705
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length839
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY688705 vs. ExPASy Swiss-Prot
Match: THSG_SULSO (Thermosome subunit gamma OS=Sulfolobus solfataricus GN=thsC PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 6.695e-19
Identity = 55/169 (32.54%), Postives = 97/169 (57.40%), Query Frame = 2
Query:   17 KPCTVLLEGASKDLLNEVERNLQDAMSVARNIINNPKLIPGGGATKLTVSATLKQKSSSI*GIQKWPYESAAIAFDAIPRTLAQNCGVNVIQTMTALQRKHANG-ENAWIGIDGNTGAISD-MKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIKKKQAPGSRQ 517
            K  TV+++G++  + +E ER+L DA +  RN++  P ++ GGGA +  ++  L+  +  + G ++  + + A A +     L++  G++ I  +T ++ KHA G +NA  GID     I D M E ++ D+  VK Q  K+A EAA  +L+IDD+++    KQ P  +Q
Sbjct:  363 KAVTVIIKGSNNMITDEAERSLNDAFNSIRNLLLEPYIVAGGGAVEEELAKRLRDDARKVIGKEQLAFNAFADALEEYVSILSETAGMDPISALTEIRHKHATGLKNA--GIDVTKARIYDNMLELRVIDSLKVKEQVLKSATEAATAILKIDDMIAAAPAKQQPQPQQ 529          
BLAST of EY688705 vs. ExPASy Swiss-Prot
Match: TCPB_CAEEL (T-complex protein 1 subunit beta OS=Caenorhabditis elegans GN=cct-2 PE=2 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 6.695e-19
Identity = 52/170 (30.59%), Postives = 97/170 (57.06%), Query Frame = 2
Query:   23 CTVLLEGASKDLLNEVERNLQDAMSVARNIINNPKLIPGGGATKLTVSATLKQKSSSI*GIQKWPYESAAIAFDAIPRTLAQNCGVNVIQTMTALQRKHANGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIKKKQAPGSRQAPSKP 532
            C+V+L GA++ +L+E ER+L DA+ V    +   K + G GA+++ +S+ +  ++  + G +    E+   A   +P  +  N G++  + +T L+ +HANG +  +GID   G ++D+ +  + ++YNVK     +A EA   +LR+DDI+     K AP +R   ++P
Sbjct:  365 CSVVLRGATQQILDESERSLHDALCVLVTHVKESKTVAGAGASEILMSSAIAVEAQKVAGKEALAVEAFGRALAQLPTIICDNAGLDSAELVTRLRAEHANGRHN-MGIDIEKGEVADVTKLGVIESYNVKLCMVSSAAEATEQILRVDDII-----KAAPRARAQDNRP 528          
BLAST of EY688705 vs. ExPASy Swiss-Prot
Match: TCPQ_CHICK (T-complex protein 1 subunit theta OS=Gallus gallus GN=CCT8 PE=1 SV=3)

HSP 1 Score: 94.3597 bits (233), Expect = 8.744e-19
Identity = 56/179 (31.28%), Postives = 95/179 (53.07%), Query Frame = 2
Query:   26 TVLLEGASKDLLNEVERNLQDAMSVARNIINNPKLIPGGGATKLTVSATLKQKSSSI*GIQKWPYESAAIAFDAIPRTLAQNCGVNVIQTMTALQRKHANG-ENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIKKKQAPGSRQAPSKPQIETEADAD 559
            T+L+ G++ +L++++ER + D ++  + +  + +L+PGGGAT++ ++  +     +  G+ ++  +  A AF+AIPR LA+N GV   + ++ L   H  G +N    I+    A+ DM E  I D Y  K    K A  AA  +LR+D I   I  K A G    P  P  + + D D
Sbjct:  374 TILIRGSTDNLMDDIERAVDDGVNTFKVLTRDKRLVPGGGATEIELAKQITSYGETCPGLDQYAIKKFAEAFEAIPRALAENSGVKANEVISKLYAVHQEGNKNVGFDIEAEAAAVKDMLEAGILDTYLGKYWGIKLATNAAVTVLRVDQI---IMAKPAGG----PKPPSGKKDWDED 545          
BLAST of EY688705 vs. ExPASy Swiss-Prot
Match: TCPB_MOUSE (T-complex protein 1 subunit beta OS=Mus musculus GN=Cct2 PE=1 SV=4)

HSP 1 Score: 94.3597 bits (233), Expect = 8.744e-19
Identity = 50/161 (31.06%), Postives = 90/161 (55.90%), Query Frame = 2
Query:   23 CTVLLEGASKDLLNEVERNLQDAMSVARNIINNPKLIPGGGATKLTVSATLKQKSSSI*GIQKWPYESAAIAFDAIPRTLAQNCGVNVIQTMTALQRKHANGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIKKKQAP 505
            CT++L GA++ +L+E ER+L DA+ V    + +P+ + GGG +++ ++  + Q ++   G +    ES A A   +P  +A N G +    +  L+  H+ G +   G+D   G I DM    I +++ VK Q   +A EAA ++LR+D+I+    +K+ P
Sbjct:  371 CTIVLRGATQQILDEAERSLHDALCVLAQTVKDPRTVYGGGCSEMLMAHAVTQLANRTPGKEAVAMESFAKALRMLPTIIADNAGYDSADLVAQLRAAHSEG-HITAGLDMKEGTIGDMAVLGITESFQVKRQVLLSAAEAAEVILRVDNIIKAAPRKRVP 530          
BLAST of EY688705 vs. ExPASy Swiss-Prot
Match: THS3_HALVO (Thermosome subunit 3 OS=Halobacterium volcanii GN=cct3 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.142e-18
Identity = 50/155 (32.26%), Postives = 93/155 (60.00%), Query Frame = 2
Query:   17 KPCTVLLEGASKDLLNEVERNLQDAMSVARNIINNPKLIPGGGATKLTVSATLKQKSSSI*GIQKWPYESAAIAFDAIPRTLAQNCGVNVIQTMTALQRKHANGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVS 481
            K  T+ L G ++ ++ E+ER ++DA+ V    I+   ++PG GAT++ ++  ++ +++ I G ++   E+ A A +A+PRTLA+N G++ I  +  L+ ++     A I   G +G I D  E  + D   VK +  ++A EAA M++RIDD+++
Sbjct:  368 KAVTLFLRGGTEHVVYELERAIEDAVDVVVAAIDKGGVVPGAGATEIAIADRIRSEAAGIEGRKQLAVEAYADAVEALPRTLAENTGMDPIDALVDLRARYETEGLAGIISSGRSGEIGDPVELGVIDPVAVKREAIESATEAATMIVRIDDVIA 522          
BLAST of EY688705 vs. ExPASy Swiss-Prot
Match: TCPE_RAT (T-complex protein 1 subunit epsilon OS=Rattus norvegicus GN=Cct5 PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.142e-18
Identity = 47/157 (29.94%), Postives = 89/157 (56.69%), Query Frame = 2
Query:    5 CKDPKPCTVLLEGASKDLLNEVERNLQDAMSVARNIINNPKLIPGGGATKLTVSATLKQKSSSI*GIQKWPYESAAIAFDAIPRTLAQNCGVNVIQTMTALQRKHANGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDI 475
            CK+ +  T+ + G +K ++ E +R+L DA+ V RN+I + +++ GGGA +++ +  + Q++     ++++   + A A + IP  L++N G+N IQTMT ++ +     N  +GID      +DM+   + +    K Q    A +   M+L+IDDI
Sbjct:  377 CKNSRAVTIFIRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGAAEISCALAVSQEADKCPTLEQYAMRAFADALEVIPMALSENSGMNPIQTMTEVRARQVKESNPALGIDCLHKGSNDMQYQHVIETLIGKKQQISLATQMVRMILKIDDI 533          
BLAST of EY688705 vs. ExPASy Swiss-Prot
Match: TCPE_MOUSE (T-complex protein 1 subunit epsilon OS=Mus musculus GN=Cct5 PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.142e-18
Identity = 47/157 (29.94%), Postives = 89/157 (56.69%), Query Frame = 2
Query:    5 CKDPKPCTVLLEGASKDLLNEVERNLQDAMSVARNIINNPKLIPGGGATKLTVSATLKQKSSSI*GIQKWPYESAAIAFDAIPRTLAQNCGVNVIQTMTALQRKHANGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDI 475
            CK+ +  T+ + G +K ++ E +R+L DA+ V RN+I + +++ GGGA +++ +  + Q++     ++++   + A A + IP  L++N G+N IQTMT ++ +     N  +GID      +DM+   + +    K Q    A +   M+L+IDDI
Sbjct:  377 CKNSRAVTIFIRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGAAEISCALAVSQEADKCPTLEQYAMRAFADALEVIPMALSENSGMNPIQTMTEVRARQVKESNPALGIDCLHKGSNDMQYQHVIETLIGKKQQISLATQMVRMILKIDDI 533          
BLAST of EY688705 vs. ExPASy Swiss-Prot
Match: TCPB_BOVIN (T-complex protein 1 subunit beta OS=Bos taurus GN=CCT2 PE=2 SV=3)

HSP 1 Score: 93.9745 bits (232), Expect = 1.142e-18
Identity = 50/161 (31.06%), Postives = 89/161 (55.28%), Query Frame = 2
Query:   23 CTVLLEGASKDLLNEVERNLQDAMSVARNIINNPKLIPGGGATKLTVSATLKQKSSSI*GIQKWPYESAAIAFDAIPRTLAQNCGVNVIQTMTALQRKHANGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIKKKQAP 505
            CT++L GA++ +L+E ER+L DA+ V    + + + + GGG +++ ++  + Q +S   G +    ES A A   +P  +A N G +    +  L+  H+ G+    G+D   G I DM    I +++ VK Q   +A EAA ++LR+D+I+    +K+ P
Sbjct:  371 CTIVLRGATQQILDEAERSLHDALCVLAQTVKDSRTVYGGGCSEMLMAHAVTQLASRTPGKEAVAMESYAKALRMLPTIIADNAGYDSADLVAQLRAAHSEGKTT-AGLDMKEGTIGDMSVLGITESFQVKRQVLLSAAEAAEVILRVDNIIKAAPRKRVP 530          
BLAST of EY688705 vs. ExPASy Swiss-Prot
Match: TCPB_RAT (T-complex protein 1 subunit beta OS=Rattus norvegicus GN=Cct2 PE=1 SV=3)

HSP 1 Score: 93.5893 bits (231), Expect = 1.492e-18
Identity = 50/161 (31.06%), Postives = 89/161 (55.28%), Query Frame = 2
Query:   23 CTVLLEGASKDLLNEVERNLQDAMSVARNIINNPKLIPGGGATKLTVSATLKQKSSSI*GIQKWPYESAAIAFDAIPRTLAQNCGVNVIQTMTALQRKHANGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIKKKQAP 505
            CT++L GA++ +L+E ER+L DA+ V    + +P+ + GGG +++ ++  +   +S   G +    ES A A   +P  +A N G +    +  L+  H+ G     G+D   G+I DM    I +++ VK Q   +A EAA ++LR+D+I+    +K+ P
Sbjct:  371 CTIVLRGATQQILDEAERSLHDALCVLAQTVKDPRTVYGGGCSEMLMAHAVTMLASRTPGKEAVAMESFAKALRMLPTIIADNAGYDSADLVAQLRAAHSEG-RITAGLDMKEGSIGDMAVLGITESFQVKRQVLLSAAEAAEVILRVDNIIKAAPRKRVP 530          
BLAST of EY688705 vs. ExPASy Swiss-Prot
Match: TCPB_MACFA (T-complex protein 1 subunit beta OS=Macaca fascicularis GN=CCT2 PE=2 SV=3)

HSP 1 Score: 93.2041 bits (230), Expect = 1.948e-18
Identity = 50/161 (31.06%), Postives = 89/161 (55.28%), Query Frame = 2
Query:   23 CTVLLEGASKDLLNEVERNLQDAMSVARNIINNPKLIPGGGATKLTVSATLKQKSSSI*GIQKWPYESAAIAFDAIPRTLAQNCGVNVIQTMTALQRKHANGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIKKKQAP 505
            CT++L GA++ +L+E ER+L DA+ V    + + + + GGG +++ ++  + Q ++   G +    ES A A   +P  +A N G +    +  L+  H+ G N   G+D   G I DM    I +++ VK Q   +A EAA ++LR+D+I+    +K+ P
Sbjct:  371 CTIVLRGATQQILDEAERSLHDALCVLAQTVKDSRTVYGGGCSEMLMAHAVTQLANRTPGKEAVAMESYAKALRMLPTIIADNAGYDSADLVAQLRAAHSEG-NTTAGLDMREGTIGDMAILGITESFQVKRQVLLSAAEAAEVILRVDNIIKAAPRKRVP 530          
The following BLAST results are available for this feature:
BLAST of EY688705 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 143
Match NameE-valueIdentityDescription
THSG_SULSO6.695e-1932.54Thermosome subunit gamma OS=Sulfolobus solfataricu... [more]
TCPB_CAEEL6.695e-1930.59T-complex protein 1 subunit beta OS=Caenorhabditis... [more]
TCPQ_CHICK8.744e-1931.28T-complex protein 1 subunit theta OS=Gallus gallus... [more]
TCPB_MOUSE8.744e-1931.06T-complex protein 1 subunit beta OS=Mus musculus G... [more]
THS3_HALVO1.142e-1832.26Thermosome subunit 3 OS=Halobacterium volcanii GN=... [more]
TCPE_RAT1.142e-1829.94T-complex protein 1 subunit epsilon OS=Rattus norv... [more]
TCPE_MOUSE1.142e-1829.94T-complex protein 1 subunit epsilon OS=Mus musculu... [more]
TCPB_BOVIN1.142e-1831.06T-complex protein 1 subunit beta OS=Bos taurus GN=... [more]
TCPB_RAT1.492e-1831.06T-complex protein 1 subunit beta OS=Rattus norvegi... [more]
TCPB_MACFA1.948e-1831.06T-complex protein 1 subunit beta OS=Macaca fascicu... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-091-E11-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY688705 ID=EY688705; Name=EY688705; organism=Citrus sinensis; type=EST; length=839bp
TGATTGCAAAGATCCAAAACCTTGTACTGTACTCTTAGAAGGTGCTAGTA
AGGATCTCCTGAATGAAGTGGAAAGGAATTTGCAGGATGCAATGTCTGTG
GCAAGAAACATAATCAATAATCCAAAACTAATACCTGGTGGTGGGGCTAC
AAAATTAACAGTGTCTGCCACTCTAAAACAAAAGAGTTCCTCAATCTAAG
GCATCCAAAAGTGGCCTTACGAATCTGCTGCTATTGCTTTTGACGCTATT
CCAAGAACTTTGGCTCAAAATTGTGGCGTTAATGTAATTCAGACTATGAC
TGCTCTGCAAAGAAAACATGCAAATGGTGAAAATGCATGGATTGGCATAG
ATGGAAACACTGGTGCAATTTCTGACATGAAAGAGGGGAAGATCTGGGAT
GCATATAATGTGAAAGCACAGACATTTAAGACAGCAATTGAAGCTGCTTG
CATGCTTCTGAGGATTGATGACATTGTCAGTGGAATTAAGAAGAAACAGG
CCCCTGGCTCACGCCAAGCTCCATCGAAGCCCCAGATTGAGACGGAGGCA
GATGCAGATAGTGAGCAAATACTCCATGATTAGACAATGTTATTGTCAAC
GACTATGCAGTTTAATTATTTGAAAAAATGTTGGTTTATTGTTCTGTTGG
CGGCCTAATGATTTTGCTGAGCTTTTCCTCCAAATTTTGTGATATTGCCC
CCATGTTTTACCCCTTGTAAAAAAATGGGGAAGCTGTGATATGCTCTGCA
AAATATATAATATATTTTTAAATCCCTGTTTTAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAGGCCGGGCCCTTTTAAAG
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