EY688687

Overview
NameEY688687
Unique NameEY688687
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length845
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY688687 vs. ExPASy Swiss-Prot
Match: R126B_XENLA (RING finger protein 126-B OS=Xenopus laevis GN=rnf126-B PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 6.708e-19
Identity = 49/111 (44.14%), Postives = 66/111 (59.46%), Query Frame = 3
Query:   87 GAGAAFRLPANLGDYFIGP-GLEQLIQQLAENDPNRYGTPPASKSAIEALPSIKINEAMMSSDSSQCAVCKDSFELNEEARQMPCKHIYHPDCIMPWLELHNSCPVCRYEL 416
            G G    L +N  DY  G  GL+ +I QL     N  G PPA    I+ALP+I+I E  +     +C VCK+ + + E  RQ+PC H++H DCI+PWLE H++CPVCR  L
Sbjct:  164 GVGPWGVLHSNPMDYAWGANGLDTIITQLLNQFENT-GPPPADTDKIQALPTIQITEEHVGF-GLECPVCKEDYTVGESVRQLPCNHLFHNDCIIPWLEQHDTCPVCRKSL 272          
BLAST of EY688687 vs. ExPASy Swiss-Prot
Match: RN181_DANRE (E3 ubiquitin-protein ligase rnf181 OS=Danio rerio GN=rnf181 PE=2 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 1.952e-18
Identity = 39/81 (48.15%), Postives = 55/81 (67.90%), Query Frame = 3
Query:  201 PPASKSAIEALPSIKINEAMMSSDSSQCAVCKDSFELNEEARQMPCKHIYHPDCIMPWLELHNSCPVCRYELPTDDPDYEQ 443
            PPA+K+ +++LP + I+    +    +C VC   FE  E  R+MPCKH++H  CI+PWL   NSCP+CR ELPTD+ DYE+
Sbjct:   53 PPAAKAVVQSLPVVIISPEQ-ADKGVKCPVCLLEFEEQESVREMPCKHLFHTGCILPWLNKTNSCPLCRLELPTDNADYEE 132          
BLAST of EY688687 vs. ExPASy Swiss-Prot
Match: RN181_HUMAN (E3 ubiquitin-protein ligase RNF181 OS=Homo sapiens GN=RNF181 PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.329e-18
Identity = 42/83 (50.60%), Postives = 52/83 (62.65%), Query Frame = 3
Query:  201 PPASKSAIEALPSIKINEAMMSSDSSQCAVCKDSFELNEEARQMPCKHIYHPDCIMPWLELHNSCPVCRYELPTDDPDYEQRR 449
            PPA+K+ +E LP   I     S    +C VC   FE  E A +MPC H++H  CI+PWL   NSCP+CRYELPTDD  YE+ R
Sbjct:   52 PPAAKTVVENLPRTVIRG---SQAELKCPVCLLEFEEEETAIEMPCHHLFHSSCILPWLSKTNSCPLCRYELPTDDDTYEEHR 131          
BLAST of EY688687 vs. ExPASy Swiss-Prot
Match: RN181_MOUSE (E3 ubiquitin-protein ligase RNF181 OS=Mus musculus GN=Rnf181 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 5.678e-18
Identity = 39/83 (46.99%), Postives = 54/83 (65.06%), Query Frame = 3
Query:  201 PPASKSAIEALPSIKINEAMMSSDSSQCAVCKDSFELNEEARQMPCKHIYHPDCIMPWLELHNSCPVCRYELPTDDPDYEQRR 449
            PPA+K+ +E+LP   I+ A       +C VC   FE  E   +MPC H++H +CI+PWL   NSCP+CR+ELPTDD  YE+ +
Sbjct:   64 PPAAKAVVESLPRTVISSAKADL---KCPVCLLEFEAEETVIEMPCHHLFHSNCILPWLSKTNSCPLCRHELPTDDDSYEEHK 143          
BLAST of EY688687 vs. ExPASy Swiss-Prot
Match: RN181_BOVIN (E3 ubiquitin-protein ligase RNF181 OS=Bos taurus GN=RNF181 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 7.416e-18
Identity = 41/83 (49.40%), Postives = 54/83 (65.06%), Query Frame = 3
Query:  201 PPASKSAIEALPSIKINEAMMSSDSSQCAVCKDSFELNEEARQMPCKHIYHPDCIMPWLELHNSCPVCRYELPTDDPDYEQRR 449
            PPA+K+A+E LP   I     S    +C VC   FE  E A +MPC H++H +CI+PWL   NSCP+CR+ELPTDD  YE+ +
Sbjct:   52 PPAAKTAVENLPRTVIRG---SQAELKCPVCLLEFEEEETAIEMPCHHLFHSNCILPWLSKTNSCPLCRHELPTDDDTYEEHK 131          
BLAST of EY688687 vs. ExPASy Swiss-Prot
Match: RN181_RAT (E3 ubiquitin-protein ligase RNF181 OS=Rattus norvegicus GN=Rnf181 PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.265e-17
Identity = 39/83 (46.99%), Postives = 53/83 (63.86%), Query Frame = 3
Query:  201 PPASKSAIEALPSIKINEAMMSSDSSQCAVCKDSFELNEEARQMPCKHIYHPDCIMPWLELHNSCPVCRYELPTDDPDYEQRR 449
            PPA+K+ +E+LP   I     S    +C VC   FE  E   +MPC H++H +CI+PWL   NSCP+CR+ELPTDD  YE+ +
Sbjct:   64 PPAAKAVVESLPRTVIRS---SKAELKCPVCLLEFEEEETVIEMPCHHLFHSNCILPWLSKTNSCPLCRHELPTDDDSYEEHK 143          
BLAST of EY688687 vs. ExPASy Swiss-Prot
Match: RN181_DROME (E3 ubiquitin-protein ligase CG7694 OS=Drosophila melanogaster GN=CG7694 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.386e-16
Identity = 41/85 (48.24%), Postives = 57/85 (67.06%), Query Frame = 3
Query:  201 PPASKSAIEALPSIKINEAMMSSDSS--QCAVCKDSFELNEEARQMPCKHIYHPDCIMPWLELHNSCPVCRYELPTDDPDYEQRR 449
            P ASK AI  LP   ++E + S +    +C+VCK+  E  ++ R +PCKH +H +CI+ WL+  NSCP+CRYEL TDDP YE+ R
Sbjct:   44 PEASKRAILELP---VHEIVKSDEGGDLECSVCKEPAEEGQKYRILPCKHEFHEECILLWLKKTNSCPLCRYELETDDPVYEELR 125          
BLAST of EY688687 vs. ExPASy Swiss-Prot
Match: YKW3_SCHPO (Uncharacterized RING finger protein P32A8.03c OS=Schizosaccharomyces pombe GN=SPAP32A8.03c PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.876e-15
Identity = 39/116 (33.62%), Postives = 64/116 (55.17%), Query Frame = 3
Query:  102 FRLPANLGDYFIGP-GLEQLIQQLAENDPNRYGTPPASKSAIEALPSIKINEAMMSSDSSQCAVCKDSFELNEEARQMPCKHIYHPDCIMPWLELHNSCPVCRYELPTDDPDYEQR 446
            F L  N GDY  G  GL+ +I QL E         PA +  I  +   K  + ++  +  +C +C + F++N++  Q+PCKH +H +CI PWL ++ +C +CR  +   DP+ +QR
Sbjct:  336 FNLSGNPGDYAWGARGLDDIISQLMEQAQGHNAPAPAPEDVIAKMKVQKPPKELIDEEG-ECTICMEMFKINDDVIQLPCKHYFHENCIKPWLRVNGTCAICRAPV---DPNSQQR 447          
BLAST of EY688687 vs. ExPASy Swiss-Prot
Match: GOLI_RAT (Goliath homolog OS=Rattus norvegicus GN=Rnf130 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.018e-11
Identity = 34/98 (34.69%), Postives = 52/98 (53.06%), Query Frame = 3
Query:  129 YFIGPGLEQLIQQLAENDPNRYGTPPASKSAIEALPS--IKINEAMMSSDSSQCAVCKDSFELNEEARQMPCKHIYHPDCIMPWLELHNSCPVCRYEL 416
            YFI     Q I+     D N+     A+K AI  L +  +K  +     D   CAVC +S++ N+  R +PCKH++H  C+ PWL  H +CP+C+  +
Sbjct:  216 YFI-----QKIRYTNARDRNQRRLGDAAKKAISKLTTRTVKKGDKETDPDFDHCAVCIESYKQNDVVRVLPCKHVFHKSCVDPWLSEHCTCPMCKLNI 308          
BLAST of EY688687 vs. ExPASy Swiss-Prot
Match: GOLI_MOUSE (Goliath homolog OS=Mus musculus GN=Rnf130 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.018e-11
Identity = 34/98 (34.69%), Postives = 52/98 (53.06%), Query Frame = 3
Query:  129 YFIGPGLEQLIQQLAENDPNRYGTPPASKSAIEALPS--IKINEAMMSSDSSQCAVCKDSFELNEEARQMPCKHIYHPDCIMPWLELHNSCPVCRYEL 416
            YFI     Q I+     D N+     A+K AI  L +  +K  +     D   CAVC +S++ N+  R +PCKH++H  C+ PWL  H +CP+C+  +
Sbjct:  216 YFI-----QKIRYTNARDRNQRRLGDAAKKAISKLTTRTVKKGDKETDPDFDHCAVCIESYKQNDVVRVLPCKHVFHKSCVDPWLSEHCTCPMCKLNI 308          
The following BLAST results are available for this feature:
BLAST of EY688687 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
R126B_XENLA6.708e-1944.14RING finger protein 126-B OS=Xenopus laevis GN=rnf... [more]
RN181_DANRE1.952e-1848.15E3 ubiquitin-protein ligase rnf181 OS=Danio rerio ... [more]
RN181_HUMAN3.329e-1850.60E3 ubiquitin-protein ligase RNF181 OS=Homo sapiens... [more]
RN181_MOUSE5.678e-1846.99E3 ubiquitin-protein ligase RNF181 OS=Mus musculus... [more]
RN181_BOVIN7.416e-1849.40E3 ubiquitin-protein ligase RNF181 OS=Bos taurus G... [more]
RN181_RAT1.265e-1746.99E3 ubiquitin-protein ligase RNF181 OS=Rattus norve... [more]
RN181_DROME2.386e-1648.24E3 ubiquitin-protein ligase CG7694 OS=Drosophila m... [more]
YKW3_SCHPO5.876e-1533.62Uncharacterized RING finger protein P32A8.03c OS=S... [more]
GOLI_RAT3.018e-1134.69Goliath homolog OS=Rattus norvegicus GN=Rnf130 PE=... [more]
GOLI_MOUSE3.018e-1134.69Goliath homolog OS=Mus musculus GN=Rnf130 PE=2 SV=... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-091-C10-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY688687 ID=EY688687; Name=EY688687; organism=Citrus sinensis; type=EST; length=845bp
AAAACTATCTTCAAAACCTACCAGTGAACGGCGCCAGCATCCAATTCGTC
GTCGAGAACAACTCCAACGTCGACCCAGCGGCCGGTGGCGCTGGGGCTGC
GTTTCGTCTCCCGGCGAATCTTGGAGACTACTTCATCGGTCCGGGCCTCG
AGCAGTTGATCCAACAGCTGGCTGAGAATGATCCAAACCGGTACGGGACA
CCGCCGGCCTCGAAATCTGCCATAGAGGCCCTCCCGAGTATCAAGATCAA
CGAGGCAATGATGAGTTCGGATTCTTCTCAGTGTGCTGTGTGTAAGGATA
GCTTTGAATTGAATGAAGAAGCTAGACAGATGCCTTGTAAGCATATATAT
CATCCGGATTGTATTATGCCTTGGCTTGAATTGCATAATTCCTGTCCTGT
TTGTCGTTATGAATTGCCAACTGATGATCCTGATTATGAACAAAGGCGGA
ATGGGAATGGGAATGGGAATAATAATAGTAATAATAACAATAGTATGAAT
CAGAGCCCAGACAAGAAGATCTTGATTAAGAAGGCATTGGGATGAAAGGC
GATTCGTATACCGCAACTGTGGGTGACATAAAAGAGGTGTTATTATTGAT
TAGTTTACAAGTGCAGTTTTACTATTCGGATAATAATCAATAGGTAAATG
TGCATTTTGATGTTAGTATTAAAAATTTTTTACAGCTCAACATGTCCTGA
CAAGTTTGATGTGCATCATTTGCTTGCATATTTTGAAAAAAAGGAAAAAA
AAAATTATCACCCTGGGACCCNTANAAAAAAAAAACCAACAAAAAATACA
AAAAAAAAACTACAAAACATGACTAAAAACAAACATAAAATCTAA
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