EY688687

Overview
NameEY688687
Unique NameEY688687
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length845
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY688687 vs. ExPASy Swiss-Prot
Match: ATL5C_ARATH (RING-H2 finger protein ATL5C OS=Arabidopsis thaliana GN=ATL5C PE=2 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 3.018e-11
Identity = 29/73 (39.73%), Postives = 43/73 (58.90%), Query Frame = 3 
Query:  213 KSAIEALPSIKINEAMMSSDSSQCAVCKDSFELNEEARQMP-CKHIYHPDCIMPWLELHNSCPVCRYELPTDD 428
            +S IE+LP  +        D  +CAVC   FE  E  R +P CKH +H +C+  WL+ H++CP+CRY +  +D
Sbjct:  123 RSVIESLPVFRFGALSGHKDGLECAVCLARFEPTEVLRLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPED 195
[Close]
BLAST of EY688687 vs. ExPASy Swiss-Prot
Match: GOLI_HUMAN (Goliath homolog OS=Homo sapiens GN=RNF130 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.941e-11
Identity = 34/98 (34.69%), Postives = 52/98 (53.06%), Query Frame = 3 
Query:  129 YFIGPGLEQLIQQLAENDPNRYGTPPASKSAIEALPS--IKINEAMMSSDSSQCAVCKDSFELNEEARQMPCKHIYHPDCIMPWLELHNSCPVCRYEL 416
            YFI     Q I+     D N+     A+K AI  L +  +K  +     D   CAVC +S++ N+  R +PCKH++H  C+ PWL  H +CP+C+  +
Sbjct:  216 YFI-----QKIRYTNARDRNQRRLGDAAKKAISKLTTRTVKKGDKETDPDFDHCAVCIESYKQNDVVRILPCKHVFHKSCVDPWLSEHCTCPMCKLNI 308
The following BLAST results are available for this feature:
BLAST of EY688687 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
ATL5C_ARATH3.018e-1139.73RING-H2 finger protein ATL5C OS=Arabidopsis thalia... [more]
GOLI_HUMAN3.941e-1134.69Goliath homolog OS=Homo sapiens GN=RNF130 PE=1 SV=... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-091-C10-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY688687 ID=EY688687; Name=EY688687; organism=Citrus sinensis; type=EST; length=845bp
AAAACTATCTTCAAAACCTACCAGTGAACGGCGCCAGCATCCAATTCGTC
GTCGAGAACAACTCCAACGTCGACCCAGCGGCCGGTGGCGCTGGGGCTGC
GTTTCGTCTCCCGGCGAATCTTGGAGACTACTTCATCGGTCCGGGCCTCG
AGCAGTTGATCCAACAGCTGGCTGAGAATGATCCAAACCGGTACGGGACA
CCGCCGGCCTCGAAATCTGCCATAGAGGCCCTCCCGAGTATCAAGATCAA
CGAGGCAATGATGAGTTCGGATTCTTCTCAGTGTGCTGTGTGTAAGGATA
GCTTTGAATTGAATGAAGAAGCTAGACAGATGCCTTGTAAGCATATATAT
CATCCGGATTGTATTATGCCTTGGCTTGAATTGCATAATTCCTGTCCTGT
TTGTCGTTATGAATTGCCAACTGATGATCCTGATTATGAACAAAGGCGGA
ATGGGAATGGGAATGGGAATAATAATAGTAATAATAACAATAGTATGAAT
CAGAGCCCAGACAAGAAGATCTTGATTAAGAAGGCATTGGGATGAAAGGC
GATTCGTATACCGCAACTGTGGGTGACATAAAAGAGGTGTTATTATTGAT
TAGTTTACAAGTGCAGTTTTACTATTCGGATAATAATCAATAGGTAAATG
TGCATTTTGATGTTAGTATTAAAAATTTTTTACAGCTCAACATGTCCTGA
CAAGTTTGATGTGCATCATTTGCTTGCATATTTTGAAAAAAAGGAAAAAA
AAAATTATCACCCTGGGACCCNTANAAAAAAAAAACCAACAAAAAATACA
AAAAAAAAACTACAAAACATGACTAAAAACAAACATAAAATCTAA
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