EY688650

Overview
NameEY688650
Unique NameEY688650
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length596
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY688650_ssr439 microsatellite EY688650_ssr439:439..450. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2668 contig Csv1_Contig2668:176..774. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY688650 vs. ExPASy Swiss-Prot
Match: NLTP6_LENCU (Non-specific lipid-transfer protein 6 OS=Lens culinaris PE=1 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 2.855e-24
Identity = 56/93 (60.22%), Postives = 66/93 (70.97%), Query Frame = 2
Query:  113 AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPG-NANVAAGLPRQCGVSIPYKISPNTDCSRVR 388
            AI+CG VT  L+PC+ +L TGG  P P CC GV+ L  AA TTPDRQAACNCLK A  SI   N N AA LP +CGV IPYKIS +T+C+ V+
Sbjct:   26 AISCGAVTSDLSPCLTYL-TGGPGPSPQCCGGVKKLLAAANTTPDRQAACNCLKSAAGSITKLNTNNAAALPGKCGVDIPYKISTSTNCNTVK 117          
BLAST of EY688650 vs. ExPASy Swiss-Prot
Match: NLTP2_LENCU (Non-specific lipid-transfer protein 2 OS=Lens culinaris PE=1 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 2.855e-24
Identity = 56/93 (60.22%), Postives = 66/93 (70.97%), Query Frame = 2
Query:  113 AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPG-NANVAAGLPRQCGVSIPYKISPNTDCSRVR 388
            AI+CG VT  L+PC+ +L TGG  P P CC GV+ L  AA TTPDRQAACNCLK A  SI   N N AA LP +CGV+IPYKIS  T+C+ V+
Sbjct:   26 AISCGAVTSDLSPCLTYL-TGGPGPSPQCCGGVKKLLAAANTTPDRQAACNCLKSAAGSITKLNTNNAAALPGKCGVNIPYKISTTTNCNTVK 117          
BLAST of EY688650 vs. ExPASy Swiss-Prot
Match: NLTP_CICAR (Non-specific lipid-transfer protein OS=Cicer arietinum PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 3.729e-24
Identity = 57/94 (60.64%), Postives = 70/94 (74.47%), Query Frame = 2
Query:  110 NAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPG-NANVAAGLPRQCGVSIPYKISPNTDCSRVR 388
            +AITCG+V  +LAPC+ +L+ GG  P   CC GVR+LN AA TTPDRQAACNCLK A  SI   NAN AA LP +C V+IPYKIS +T+C+ +R
Sbjct:   23 SAITCGRVDTALAPCLGYLQ-GGPGPSAQCCGGVRNLNSAAVTTPDRQAACNCLKSAAGSISRLNANNAAALPGKCVVNIPYKISTSTNCATIR 115          
BLAST of EY688650 vs. ExPASy Swiss-Prot
Match: NLTP3_ARATH (Non-specific lipid-transfer protein 3 OS=Arabidopsis thaliana GN=LTP3 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 6.360e-24
Identity = 52/96 (54.17%), Postives = 69/96 (71.88%), Query Frame = 2
Query:  104 VTNAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPG-NANVAAGLPRQCGVSIPYKISPNTDCSRVR 388
            V  AI+CG V GSLAPC  +L  GG   PP CC GV++LN  A+TTPDRQ AC C++   +SI G N ++A+GLP +CGVSIPY IS +T+C+ ++
Sbjct:   21 VDAAISCGTVAGSLAPCATYLSKGG-LVPPSCCAGVKTLNSMAKTTPDRQQACRCIQSTAKSISGLNPSLASGLPGKCGVSIPYPISMSTNCNNIK 115          
BLAST of EY688650 vs. ExPASy Swiss-Prot
Match: NLTP_GERHY (Non-specific lipid-transfer protein OS=Gerbera hybrida PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.085e-23
Identity = 53/93 (56.99%), Postives = 63/93 (67.74%), Query Frame = 2
Query:  110 NAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPG-NANVAAGLPRQCGVSIPYKISPNTDCSRV 385
            +AI+CGQVT  L PC  +L  GG  PP  CCNGVR LN AA+TTPDRQ AC CLK    +    N N A  LP +CG+SI YKI+PN DCS++
Sbjct:   24 DAISCGQVTSGLVPCFGYLAAGGPVPPA-CCNGVRGLNNAAKTTPDRQTACGCLKGILAANTRINLNNANSLPGKCGISIGYKITPNIDCSKI 115          
BLAST of EY688650 vs. ExPASy Swiss-Prot
Match: NLTP2_ORYSI (Non-specific lipid-transfer protein 2 OS=Oryza sativa subsp. indica GN=LTP2-A PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.085e-23
Identity = 54/92 (58.70%), Postives = 66/92 (71.74%), Query Frame = 2
Query:  113 AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPG-NANVAAGLPRQCGVSIPYKISPNTDCSRV 385
            AI+CGQV  +++PC+++ R GG  P   CC+GVRSLN AA TT DR+ ACNCLK    SI G NA  AA +P +CGVSIPY ISP+ DCS V
Sbjct:   27 AISCGQVNSAVSPCLSYAR-GGSGPSAACCSGVRSLNSAASTTADRRTACNCLKNVAGSISGLNAGNAASIPSKCGVSIPYTISPSIDCSSV 117          
BLAST of EY688650 vs. ExPASy Swiss-Prot
Match: NLTP1_ORYSJ (Non-specific lipid-transfer protein 1 OS=Oryza sativa subsp. japonica GN=LTP PE=1 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.085e-23
Identity = 54/92 (58.70%), Postives = 64/92 (69.57%), Query Frame = 2
Query:  113 AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPG-NANVAAGLPRQCGVSIPYKISPNTDCSRV 385
            AITCGQV  ++ PC+ + R GG  P   CC+GVRSL  AA TT DR+ ACNCLK A R I G NA  AA +P +CGVS+PY IS + DCSRV
Sbjct:   25 AITCGQVNSAVGPCLTYAR-GGAGPSAACCSGVRSLKAAASTTADRRTACNCLKNAARGIKGLNAGNAASIPSKCGVSVPYTISASIDCSRV 115          
BLAST of EY688650 vs. ExPASy Swiss-Prot
Match: NLTP1_ORYSI (Non-specific lipid-transfer protein 1 OS=Oryza sativa subsp. indica GN=LTP PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.085e-23
Identity = 54/92 (58.70%), Postives = 64/92 (69.57%), Query Frame = 2
Query:  113 AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPG-NANVAAGLPRQCGVSIPYKISPNTDCSRV 385
            AITCGQV  ++ PC+ + R GG  P   CC+GVRSL  AA TT DR+ ACNCLK A R I G NA  AA +P +CGVS+PY IS + DCSRV
Sbjct:   25 AITCGQVNSAVGPCLTYAR-GGAGPSAACCSGVRSLKAAASTTADRRTACNCLKNAARGIKGLNAGNAASIPSKCGVSVPYTISASIDCSRV 115          
BLAST of EY688650 vs. ExPASy Swiss-Prot
Match: NLT41_HORVU (Non-specific lipid-transfer protein 4.1 OS=Hordeum vulgare GN=LTP4.1 PE=1 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.085e-23
Identity = 49/92 (53.26%), Postives = 67/92 (72.83%), Query Frame = 2
Query:  113 AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGNANVAAGLPRQCGVSIPYKISPNTDCSRVR 388
            AI+CGQV+ +L+PCI++ R  G  PP  CC+GV+ L GAA++T D+QAAC C+K A   +  NA  AAG+P  CGVS+PY IS + DCS++R
Sbjct:   26 AISCGQVSSALSPCISYARGNGAKPPAACCSGVKRLAGAAQSTADKQAACKCIKSAAGGL--NAGKAAGIPSMCGVSVPYAISASVDCSKIR 115          
BLAST of EY688650 vs. ExPASy Swiss-Prot
Match: NLT2B_ORYSJ (Non-specific lipid-transfer protein 2B OS=Oryza sativa subsp. japonica GN=LTP2-B PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.085e-23
Identity = 54/92 (58.70%), Postives = 66/92 (71.74%), Query Frame = 2
Query:  113 AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPG-NANVAAGLPRQCGVSIPYKISPNTDCSRV 385
            AI+CGQV  +++PC+++ R GG  P   CC+GVRSLN AA TT DR+ ACNCLK    SI G NA  AA +P +CGVSIPY ISP+ DCS V
Sbjct:   26 AISCGQVNSAVSPCLSYAR-GGSGPSAACCSGVRSLNSAATTTADRRTACNCLKNVAGSISGLNAGNAASIPSKCGVSIPYTISPSIDCSSV 116          
The following BLAST results are available for this feature:
BLAST of EY688650 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 76
Match NameE-valueIdentityDescription
NLTP6_LENCU2.855e-2460.22Non-specific lipid-transfer protein 6 OS=Lens culi... [more]
NLTP2_LENCU2.855e-2460.22Non-specific lipid-transfer protein 2 OS=Lens culi... [more]
NLTP_CICAR3.729e-2460.64Non-specific lipid-transfer protein OS=Cicer ariet... [more]
NLTP3_ARATH6.360e-2454.17Non-specific lipid-transfer protein 3 OS=Arabidops... [more]
NLTP_GERHY1.085e-2356.99Non-specific lipid-transfer protein OS=Gerbera hyb... [more]
NLTP2_ORYSI1.085e-2358.70Non-specific lipid-transfer protein 2 OS=Oryza sat... [more]
NLTP1_ORYSJ1.085e-2358.70Non-specific lipid-transfer protein 1 OS=Oryza sat... [more]
NLTP1_ORYSI1.085e-2358.70Non-specific lipid-transfer protein 1 OS=Oryza sat... [more]
NLT41_HORVU1.085e-2353.26Non-specific lipid-transfer protein 4.1 OS=Hordeum... [more]
NLT2B_ORYSJ1.085e-2358.70Non-specific lipid-transfer protein 2B OS=Oryza sa... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-090-G08-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY688650 ID=EY688650; Name=EY688650; organism=Citrus sinensis; type=EST; length=596bp
CTGATAACTAGCTATAACCAAGCAAAAGCCTCCCTGAAAAATCCTCATGG
CTGCTCTTAAGCTTGTTTGTGCTTTGCTTTTGTGCATTCTGGTGACTGCC
CCAGTGACTAATGCCATAACATGTGGGCAGGTGACAGGCTCCTTGGCTCC
ATGCATCGCTTTCTTGAGAACTGGAGGGCGTTTTCCTCCACCCCCATGCT
GTAACGGCGTCAGGTCTCTCAACGGCGCCGCCAGAACCACCCCTGACCGC
CAAGCTGCATGCAACTGCTTGAAGCAAGCTTACCGATCAATCCCCGGCAA
CGCTAATGTTGCCGCTGGCCTTCCTCGTCAATGTGGAGTCAGCATTCCTT
ACAAGATCAGCCCCAACACTGACTGCTCTAGGGTCAGGTGAAGTTGAGTT
TGAGCTCTGTGACTTTCCAAGTATGATTGACTGAGAAGAATAAATAAATA
AAGAATATATATGTTAATTTCTTTGTCCGAACGAGTCTCCACTTGTGTGA
GTCTCACTCTCATGTCATGTTTGTATCTTTGCTTTTAATATCATATTAAA
TATGTAAACGTGATCTGTGTTTTGAGTGATTAAAAAAAAAAAAAAA
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