EY688650

Overview
NameEY688650
Unique NameEY688650
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length596
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY688650_ssr439 microsatellite EY688650_ssr439:439..450. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2668 contig Csv1_Contig2668:176..774. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY688650 vs. ExPASy Swiss-Prot
Match: NLT2A_ORYSJ (Non-specific lipid-transfer protein 2A OS=Oryza sativa subsp. japonica GN=LTP2-A PE=3 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 1.085e-23
Identity = 54/92 (58.70%), Postives = 66/92 (71.74%), Query Frame = 2
Query:  113 AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPG-NANVAAGLPRQCGVSIPYKISPNTDCSRV 385
            AI+CGQV  +++PC+++ R GG  P   CC+GVRSLN AA TT DR+ ACNCLK    SI G NA  AA +P +CGVSIPY ISP+ DCS V
Sbjct:   27 AISCGQVNSAVSPCLSYAR-GGSGPSAACCSGVRSLNSAASTTADRRTACNCLKNVAGSISGLNAGNAASIPSKCGVSIPYTISPSIDCSSV 117          
BLAST of EY688650 vs. ExPASy Swiss-Prot
Match: NLTP1_SOLLC (Non-specific lipid-transfer protein 1 OS=Solanum lycopersicum GN=TSW12 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.417e-23
Identity = 54/97 (55.67%), Postives = 69/97 (71.13%), Query Frame = 2
Query:  101 PVTNAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPG-NANVAAGLPRQCGVSIPYKISPNTDCSRVR 388
            P   A+TCGQVT  LAPC+ +L+  GR P   CC GV++L G+A+TT DR+ AC CLK A  +I G + N AAG+P  C V+IPYKISP+TDCS V+
Sbjct:   20 PHAEALTCGQVTAGLAPCLPYLQ--GRGPLGGCCGGVKNLLGSAKTTADRKTACTCLKSAANAIKGIDLNKAAGIPSVCKVNIPYKISPSTDCSTVQ 114          
BLAST of EY688650 vs. ExPASy Swiss-Prot
Match: NLT43_HORVU (Non-specific lipid-transfer protein 4.3 OS=Hordeum vulgare GN=LTP4.3 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.417e-23
Identity = 49/92 (53.26%), Postives = 67/92 (72.83%), Query Frame = 2
Query:  113 AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGNANVAAGLPRQCGVSIPYKISPNTDCSRVR 388
            AI+CGQV+ +L+PCI++ R  G  PP  CC+GV+ L GAA++T D+QAAC C+K A   +  NA  AAG+P  CGVS+PY IS + DCS++R
Sbjct:   26 AISCGQVSSALSPCISYARGNGAKPPVACCSGVKRLAGAAQSTADKQAACKCIKSAAGGL--NAGKAAGIPSMCGVSVPYAISASVDCSKIR 115          
BLAST of EY688650 vs. ExPASy Swiss-Prot
Match: NLT42_HORVU (Non-specific lipid-transfer protein 4.2 OS=Hordeum vulgare GN=LTP4.2 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.417e-23
Identity = 49/92 (53.26%), Postives = 67/92 (72.83%), Query Frame = 2
Query:  113 AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGNANVAAGLPRQCGVSIPYKISPNTDCSRVR 388
            AI+CGQV+ +L+PCI++ R  G  PP  CC+GV+ L GAA++T D+QAAC C+K A   +  NA  AAG+P  CGVS+PY IS + DCS++R
Sbjct:   26 AISCGQVSSALSPCISYARGNGAKPPVACCSGVKRLAGAAQSTADKQAACKCIKSAAGGL--NAGKAAGIPSMCGVSVPYAISASVDCSKIR 115          
BLAST of EY688650 vs. ExPASy Swiss-Prot
Match: NLTP1_SOLPN (Non-specific lipid-transfer protein 1 OS=Solanum pennellii GN=LTP1 PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.851e-23
Identity = 54/97 (55.67%), Postives = 68/97 (70.10%), Query Frame = 2
Query:  101 PVTNAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPG-NANVAAGLPRQCGVSIPYKISPNTDCSRVR 388
            P   A+TCGQVT  LAPC+ +L+  GR P   CC GV+ L G+A+TT DR+ AC CLK A  +I G + N AAG+P  C V+IPYKISP+TDCS V+
Sbjct:   20 PHAEALTCGQVTAGLAPCLPYLQ--GRGPLGGCCGGVKGLLGSAKTTADRKTACTCLKSAANAIKGIDLNKAAGIPSVCKVNIPYKISPSTDCSTVQ 114          
BLAST of EY688650 vs. ExPASy Swiss-Prot
Match: NLTP_BETVU (Non-specific lipid-transfer protein OS=Beta vulgaris GN=IWF1' PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.417e-23
Identity = 53/96 (55.21%), Postives = 64/96 (66.67%), Query Frame = 2
Query:  101 PVTNAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPG-NANVAAGLPRQCGVSIPYKISPNTDCSRV 385
            P+  AITCG V   LAPCI +L+ G   P   CC G++SLN AA +  DR+ AC CLK A  SI G N   AA LPRQCGVS+PY ISPNT+C+ +
Sbjct:   22 PLAEAITCGLVASKLAPCIGYLQ-GAPGPSAACCGGIKSLNSAAASPADRKTACTCLKSAATSIKGINYGKAASLPRQCGVSVPYAISPNTNCNAI 116          
BLAST of EY688650 vs. ExPASy Swiss-Prot
Match: NLTP1_ARATH (Non-specific lipid-transfer protein 1 OS=Arabidopsis thaliana GN=LTP1 PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 3.157e-23
Identity = 52/100 (52.00%), Postives = 72/100 (72.00%), Query Frame = 2
Query:  101 PVTN--AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPG--NANVAAGLPRQCGVSIPYKISPNTDCSRVR 388
            P+T+  A++CG V  +LA CI ++  GG  PP  CC+GV++LN  A+TTPDRQ ACNC++ A R++    NA  AAG+P+ CGV+IPYKIS +T+C  VR
Sbjct:   20 PITSNAALSCGSVNSNLAACIGYVLQGGVIPPA-CCSGVKNLNSIAKTTPDRQQACNCIQGAARALGSGLNAGRAAGIPKACGVNIPYKISTSTNCKTVR 118          
BLAST of EY688650 vs. ExPASy Swiss-Prot
Match: SCA_LILLO (Stigma/stylar cysteine-rich adhesin OS=Lilium longiflorum GN=SCA PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 4.123e-23
Identity = 52/94 (55.32%), Postives = 64/94 (68.09%), Query Frame = 2
Query:  110 NAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYR-SIPGNANVAAGLPRQCGVSIPYKISPNTDCSRVR 388
            +AITCGQV   L  C+ + R GG  PP  CC GVR+LN  A+TTPDRQ ACNCLK     S+  NA + AG+P +CGV+IPY I   TDC++VR
Sbjct:   21 SAITCGQVDSDLTSCLGYARKGGVIPPG-CCAGVRTLNNLAKTTPDRQTACNCLKSLVNPSLGLNAAIVAGIPGKCGVNIPYPIRMQTDCNKVR 113          
BLAST of EY688650 vs. ExPASy Swiss-Prot
Match: NLTP4_ORYSJ (Non-specific lipid-transfer protein 4 OS=Oryza sativa subsp. japonica GN=Os12g0114500 PE=3 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 7.032e-23
Identity = 51/96 (53.12%), Postives = 64/96 (66.67%), Query Frame = 2
Query:  101 PVTNAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPG-NANVAAGLPRQCGVSIPYKISPNTDCSRV 385
            P  +A+TCGQV   LAPCI +       P   CC+GVR+LN AA TT DRQ  C CLKQ   ++ G   ++ AG+P +CGV+IPY ISP+TDCSRV
Sbjct:   23 PAASAVTCGQVVSMLAPCIMYATGRVSAPTGGCCDGVRTLNSAAATTADRQTTCACLKQQTSAMGGLRPDLVAGIPSKCGVNIPYAISPSTDCSRV 118          
BLAST of EY688650 vs. ExPASy Swiss-Prot
Match: NLTPA_BRAOT (Non-specific lipid-transfer protein A OS=Brassica oleracea var. italica GN=WAX9A PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.200e-22
Identity = 51/100 (51.00%), Postives = 67/100 (67.00%), Query Frame = 2
Query:  101 PVT--NAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGNANV--AAGLPRQCGVSIPYKISPNTDCSRVR 388
            P+T   A+TCG V  ++APCI ++  GG  P   CC GV  LN  ARTTPDRQ AC CL+ A R++  N N   AAG+P+ CGVS+P+ IS NT+C+ V+
Sbjct:   20 PITANRALTCGTVNSNVAPCIGYITQGGTLPGA-CCTGVSKLNSMARTTPDRQQACRCLETAARALGPNLNAGRAAGIPKACGVSVPFPISTNTNCNNVK 118          
The following BLAST results are available for this feature:
BLAST of EY688650 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 76
Match NameE-valueIdentityDescription
NLT2A_ORYSJ1.085e-2358.70Non-specific lipid-transfer protein 2A OS=Oryza sa... [more]
NLTP1_SOLLC1.417e-2355.67Non-specific lipid-transfer protein 1 OS=Solanum l... [more]
NLT43_HORVU1.417e-2353.26Non-specific lipid-transfer protein 4.3 OS=Hordeum... [more]
NLT42_HORVU1.417e-2353.26Non-specific lipid-transfer protein 4.2 OS=Hordeum... [more]
NLTP1_SOLPN1.851e-2355.67Non-specific lipid-transfer protein 1 OS=Solanum p... [more]
NLTP_BETVU2.417e-2355.21Non-specific lipid-transfer protein OS=Beta vulgar... [more]
NLTP1_ARATH3.157e-2352.00Non-specific lipid-transfer protein 1 OS=Arabidops... [more]
SCA_LILLO4.123e-2355.32Stigma/stylar cysteine-rich adhesin OS=Lilium long... [more]
NLTP4_ORYSJ7.032e-2353.13Non-specific lipid-transfer protein 4 OS=Oryza sat... [more]
NLTPA_BRAOT1.200e-2251.00Non-specific lipid-transfer protein A OS=Brassica ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-090-G08-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY688650 ID=EY688650; Name=EY688650; organism=Citrus sinensis; type=EST; length=596bp
CTGATAACTAGCTATAACCAAGCAAAAGCCTCCCTGAAAAATCCTCATGG
CTGCTCTTAAGCTTGTTTGTGCTTTGCTTTTGTGCATTCTGGTGACTGCC
CCAGTGACTAATGCCATAACATGTGGGCAGGTGACAGGCTCCTTGGCTCC
ATGCATCGCTTTCTTGAGAACTGGAGGGCGTTTTCCTCCACCCCCATGCT
GTAACGGCGTCAGGTCTCTCAACGGCGCCGCCAGAACCACCCCTGACCGC
CAAGCTGCATGCAACTGCTTGAAGCAAGCTTACCGATCAATCCCCGGCAA
CGCTAATGTTGCCGCTGGCCTTCCTCGTCAATGTGGAGTCAGCATTCCTT
ACAAGATCAGCCCCAACACTGACTGCTCTAGGGTCAGGTGAAGTTGAGTT
TGAGCTCTGTGACTTTCCAAGTATGATTGACTGAGAAGAATAAATAAATA
AAGAATATATATGTTAATTTCTTTGTCCGAACGAGTCTCCACTTGTGTGA
GTCTCACTCTCATGTCATGTTTGTATCTTTGCTTTTAATATCATATTAAA
TATGTAAACGTGATCTGTGTTTTGAGTGATTAAAAAAAAAAAAAAA
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