EY688650

Overview
NameEY688650
Unique NameEY688650
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length596
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY688650_ssr439 microsatellite EY688650_ssr439:439..450. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2668 contig Csv1_Contig2668:176..774. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY688650 vs. ExPASy Swiss-Prot
Match: NLTP_ELECO (Non-specific lipid-transfer protein OS=Eleusine coracana PE=1 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.326e-21
Identity = 51/93 (54.84%), Postives = 65/93 (69.89%), Query Frame = 2
Query:  113 AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNC-LKQAYRSIPG-NANVAAGLPRQCGVSIPYKISPNTDCSRV 385
            AI+CGQV+ ++ PC+A+ R  G  P   C +GVRSLN AARTT DR+AACNC LK A   + G NA  A+ +P +CGV +PY IS + DCSRV
Sbjct:    1 AISCGQVSSAIGPCLAYARGAGAAPSASCQSGVRSLNAAARTTADRRAACNCSLKSAASRVSGLNAGKASSIPGRCGVRLPYAISASIDCSRV 93          
BLAST of EY688650 vs. ExPASy Swiss-Prot
Match: NLTP2_SOLCI (Non-specific lipid-transfer protein 2 OS=Solanum chilense PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.326e-21
Identity = 53/97 (54.64%), Postives = 64/97 (65.98%), Query Frame = 2
Query:  101 PVTNAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPG-NANVAAGLPRQCGVSIPYKISPNTDCSRVR 388
            P   A+TCGQVT +LAPC+ +L   G  P   CC GV+ L G A+TT DRQAAC CLK A  S    +   AA LP  C V+IPYKISP+TDCS+V+
Sbjct:   20 PHAEALTCGQVTSTLAPCLPYLMNRG--PLGGCCGGVKGLLGQAQTTVDRQAACACLKSAASSFTDLDLGKAASLPSTCNVNIPYKISPSTDCSKVQ 114          
BLAST of EY688650 vs. ExPASy Swiss-Prot
Match: NLTP1_BRANA (Non-specific lipid-transfer protein 1 OS=Brassica napus GN=LTP1 PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.326e-21
Identity = 52/93 (55.91%), Postives = 64/93 (68.82%), Query Frame = 2
Query:  113 AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPG-NANVAAGLPRQCGVSIPYKISPNTDCSRVR 388
            A++CG V+G+LA CI +L   G  P   CC GV +LN  ARTTPDRQ AC CL  A  + P  NA  AAGLP+ CGV+IPYKIS +T+C+ VR
Sbjct:   26 ALSCGTVSGNLAACIGYLTQNGPLPRG-CCTGVTNLNNMARTTPDRQQACRCLVGAANAFPTLNAARAAGLPKACGVNIPYKISKSTNCNSVR 117          
BLAST of EY688650 vs. ExPASy Swiss-Prot
Match: NLTP3_BRANA (Non-specific lipid-transfer protein 3 OS=Brassica napus GN=LTP3 PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.732e-21
Identity = 51/93 (54.84%), Postives = 64/93 (68.82%), Query Frame = 2
Query:  113 AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPG-NANVAAGLPRQCGVSIPYKISPNTDCSRVR 388
            A++CG V+G+LA CI +L   G  P   CC+GV SLN  ARTTPDRQ AC CL  A  ++P  N   AAGLP+ CGV+IPYKIS  T+C+ V+
Sbjct:   26 ALSCGTVSGNLAACIGYLTQNGPVPTA-CCSGVTSLNNMARTTPDRQQACRCLVGAANALPTINVARAAGLPKACGVNIPYKISKTTNCNSVK 117          
BLAST of EY688650 vs. ExPASy Swiss-Prot
Match: NLTP3_LENCU (Non-specific lipid-transfer protein 3 OS=Lens culinaris PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.262e-21
Identity = 54/96 (56.25%), Postives = 65/96 (67.71%), Query Frame = 2
Query:  113 AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSI----PGNANVAAGLPRQCGVSIPYKISPNTDCSRVR 388
            A++CG VTG LAPCI +L TGG  P   CC GV+ L  AA TT DRQAACNCLK A  +I    PGN   AA LP +C V+IPYKIS  T+C+ ++
Sbjct:   26 AVSCGTVTGDLAPCIPYL-TGGAGPTDSCCAGVKKLLAAAPTTADRQAACNCLKTAAGNINNLNPGN---AAALPGKCNVNIPYKISTTTNCNTIK 117          
BLAST of EY688650 vs. ExPASy Swiss-Prot
Match: NLTP1_PHAAU (Non-specific lipid-transfer protein 1 OS=Phaseolus aureus PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 3.859e-21
Identity = 48/91 (52.75%), Postives = 66/91 (72.53%), Query Frame = 2
Query:  116 ITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPG-NANVAAGLPRQCGVSIPYKISPNTDCSRV 385
            +TCGQV G+LA CI FL+ GG   PP CC GV+++  ++RTT DR+A C+CLK A  ++ G N N A  LP +CGV+IPYKIS +T+C+ +
Sbjct:    1 MTCGQVQGNLAQCIGFLQKGG-VVPPSCCTGVKNILNSSRTTADRRAVCSCLKAAAGAVRGINPNNAEALPGKCGVNIPYKISTSTNCNSI 90          
BLAST of EY688650 vs. ExPASy Swiss-Prot
Match: NLTP8_HORVU (Non-specific lipid-transfer protein Cw18 OS=Hordeum vulgare GN=CW18 PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 5.040e-21
Identity = 48/93 (51.61%), Postives = 63/93 (67.74%), Query Frame = 2
Query:  113 AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPG--NANVAAGLPRQCGVSIPYKISPNTDCSRV 385
            AITCGQV+ +L PC A+ +  G  P   CC+GV+ L G AR+T D+QA C CLK    S+ G  NA  AAG+P +CGVS+PY IS + DCS++
Sbjct:   26 AITCGQVSSALGPCAAYAKGSGTSPSAGCCSGVKRLAGLARSTADKQATCRCLK----SVAGAYNAGRAAGIPSRCGVSVPYTISASVDCSKI 114          
BLAST of EY688650 vs. ExPASy Swiss-Prot
Match: NLTP3_VITSX (Non-specific lipid-transfer protein P3 OS=Vitis sp. PE=1 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 1.466e-20
Identity = 48/91 (52.75%), Postives = 63/91 (69.23%), Query Frame = 2
Query:  116 ITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPG-NANVAAGLPRQCGVSIPYKISPNTDCSRV 385
            ++CG V   +A CI +LR  G  P   CCNGV++L  +A TT DR+ AC CL  A ++I G N  +AAGLP +CGVSIPYKISP+T+C +V
Sbjct:    1 LSCGDVATQMASCINYLRGAGPLPAA-CCNGVKNLKNSATTTQDRRTACKCLISASKTISGVNFGLAAGLPAKCGVSIPYKISPSTNCDQV 90          
BLAST of EY688650 vs. ExPASy Swiss-Prot
Match: NLTP7_ARATH (Non-specific lipid-transfer protein 7 OS=Arabidopsis thaliana GN=LTP7 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 7.277e-20
Identity = 49/94 (52.13%), Postives = 64/94 (68.09%), Query Frame = 2
Query:  113 AITCGQVTGSLAPCIAFLRTGG-RFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSI-PG-NANVAAGLPRQCGVSIPY--KISPNTDCS 379
            A++CG+V  +L PC  +L  GG   P P CCNGVR LNG   TT DR+ AC C+K A R++ PG NA+ AAG+PR+CG+ IPY  +I  NT C+
Sbjct:   26 ALSCGEVNSNLKPCTGYLTNGGITSPGPQCCNGVRKLNGMVLTTLDRRQACRCIKNAARNVGPGLNADRAAGIPRRCGIKIPYSTQIRFNTKCN 119          
BLAST of EY688650 vs. ExPASy Swiss-Prot
Match: NLTP6_GOSHI (Non-specific lipid-transfer protein 6 OS=Gossypium hirsutum GN=LTP6 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.765e-19
Identity = 50/94 (53.19%), Postives = 58/94 (61.70%), Query Frame = 2
Query:  113 AITCGQVTGSLAPCIAFLRTGGRFPPPP-CCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPG-NANVAAGLPRQCGVSIPYKISPNTDCSRVR 388
            AI+  QV  SL PC+ ++R     P PP  C G+RSL  AAR   DRQAAC C+K     I   N  VAAGLP QC V IPYKISP+ DC RV+
Sbjct:   27 AISYDQVKSSLLPCVGYVRGNNARPAPPNYCKGIRSLKSAARIRLDRQAACKCIKSLAADISDINYGVAAGLPGQCNVHIPYKISPSIDCKRVK 120          
The following BLAST results are available for this feature:
BLAST of EY688650 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 76
Match NameE-valueIdentityDescription
NLTP_ELECO1.326e-2154.84Non-specific lipid-transfer protein OS=Eleusine co... [more]
NLTP2_SOLCI1.326e-2154.64Non-specific lipid-transfer protein 2 OS=Solanum c... [more]
NLTP1_BRANA1.326e-2155.91Non-specific lipid-transfer protein 1 OS=Brassica ... [more]
NLTP3_BRANA1.732e-2154.84Non-specific lipid-transfer protein 3 OS=Brassica ... [more]
NLTP3_LENCU2.262e-2156.25Non-specific lipid-transfer protein 3 OS=Lens culi... [more]
NLTP1_PHAAU3.859e-2152.75Non-specific lipid-transfer protein 1 OS=Phaseolus... [more]
NLTP8_HORVU5.040e-2151.61Non-specific lipid-transfer protein Cw18 OS=Hordeu... [more]
NLTP3_VITSX1.466e-2052.75Non-specific lipid-transfer protein P3 OS=Vitis sp... [more]
NLTP7_ARATH7.277e-2052.13Non-specific lipid-transfer protein 7 OS=Arabidops... [more]
NLTP6_GOSHI2.765e-1953.19Non-specific lipid-transfer protein 6 OS=Gossypium... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-090-G08-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY688650 ID=EY688650; Name=EY688650; organism=Citrus sinensis; type=EST; length=596bp
CTGATAACTAGCTATAACCAAGCAAAAGCCTCCCTGAAAAATCCTCATGG
CTGCTCTTAAGCTTGTTTGTGCTTTGCTTTTGTGCATTCTGGTGACTGCC
CCAGTGACTAATGCCATAACATGTGGGCAGGTGACAGGCTCCTTGGCTCC
ATGCATCGCTTTCTTGAGAACTGGAGGGCGTTTTCCTCCACCCCCATGCT
GTAACGGCGTCAGGTCTCTCAACGGCGCCGCCAGAACCACCCCTGACCGC
CAAGCTGCATGCAACTGCTTGAAGCAAGCTTACCGATCAATCCCCGGCAA
CGCTAATGTTGCCGCTGGCCTTCCTCGTCAATGTGGAGTCAGCATTCCTT
ACAAGATCAGCCCCAACACTGACTGCTCTAGGGTCAGGTGAAGTTGAGTT
TGAGCTCTGTGACTTTCCAAGTATGATTGACTGAGAAGAATAAATAAATA
AAGAATATATATGTTAATTTCTTTGTCCGAACGAGTCTCCACTTGTGTGA
GTCTCACTCTCATGTCATGTTTGTATCTTTGCTTTTAATATCATATTAAA
TATGTAAACGTGATCTGTGTTTTGAGTGATTAAAAAAAAAAAAAAA
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