EY688650

Overview
NameEY688650
Unique NameEY688650
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length596
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY688650_ssr439 microsatellite EY688650_ssr439:439..450. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2668 contig Csv1_Contig2668:176..774. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY688650 vs. ExPASy Swiss-Prot
Match: NLTP1_HORVU (Non-specific lipid-transfer protein 1 OS=Hordeum vulgare GN=LTP1 PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.765e-19
Identity = 44/92 (47.83%), Postives = 60/92 (65.22%), Query Frame = 2
Query:  113 AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPG-NANVAAGLPRQCGVSIPYKISPNTDCSRV 385
            A+ CGQV   + PC+ +++ GG  P   CCNGVR L+  A+++ DRQ  CNCLK   R I   N N AA +P +C V++PY ISP+ DCSR+
Sbjct:   26 ALNCGQVDSKMKPCLTYVQ-GGPGPSGECCNGVRDLHNQAQSSGDRQTVCNCLKGIARGIHNLNLNNAASIPSKCNVNVPYTISPDIDCSRI 116          
BLAST of EY688650 vs. ExPASy Swiss-Prot
Match: NLTP2_ARATH (Non-specific lipid-transfer protein 2 OS=Arabidopsis thaliana GN=LTP2 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 6.161e-19
Identity = 53/100 (53.00%), Postives = 67/100 (67.00%), Query Frame = 2
Query:  101 PVT-NAI-TCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSI-PG-NANVAAGLPRQCGVSIPYKISPNTDCSRVR 388
            P+T NA+ +CG V G+LA CIA+L  G       CCNGV +L   A TTPDRQ AC CL+ A +++ PG N   AAGLP  C V+IPYKIS +T+C+ VR
Sbjct:   20 PITANALMSCGTVNGNLAGCIAYLTRGAPLTQG-CCNGVTNLKNMASTTPDRQQACRCLQSAAKAVGPGLNTARAAGLPSACKVNIPYKISASTNCNTVR 118          
BLAST of EY688650 vs. ExPASy Swiss-Prot
Match: NLTP_AMACA (Non-specific lipid-transfer protein OS=Amaranthus caudatus PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.051e-18
Identity = 46/94 (48.94%), Postives = 60/94 (63.83%), Query Frame = 2
Query:  113 AITCGQVTGSLAPCIAFLRTGGRFPPPP-CCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPG-NANVAAGLPRQCGVSIPYKISPNTDCSRVR 388
            A+TC  VT +L PC+ +L+  G  PPP  CC GVRSL  AA+T  DR+ ACNC+K A +     N  VAA L  QCGV + Y +SPN +C+ V+
Sbjct:    1 AVTCTVVTKALGPCMTYLKGTGATPPPANCCAGVRSLKAAAQTVADRRMACNCMKSAAQKTKSLNYKVAARLASQCGVRMSYSVSPNVNCNSVQ 94          
BLAST of EY688650 vs. ExPASy Swiss-Prot
Match: NLTP1_AMAHP (Non-specific lipid-transfer protein 1 OS=Amaranthus hypochondriacus PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.051e-18
Identity = 46/94 (48.94%), Postives = 60/94 (63.83%), Query Frame = 2
Query:  113 AITCGQVTGSLAPCIAFLRTGGRFPPPP-CCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPG-NANVAAGLPRQCGVSIPYKISPNTDCSRVR 388
            A+TC  VT +L PC+ +L+  G  PPP  CC GVRSL  AA+T  DR+ ACNC+K A +     N  VAA L  QCGV + Y +SPN +C+ V+
Sbjct:    1 AVTCTVVTKALGPCMTYLKGTGATPPPANCCAGVRSLKAAAQTVADRRMACNCMKSAAQKTKSLNYKVAARLASQCGVRMSYSVSPNVNCNSVQ 94          
BLAST of EY688650 vs. ExPASy Swiss-Prot
Match: NLTP1_HELAN (Non-specific lipid-transfer protein AP10 OS=Helianthus annuus PE=1 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 1.372e-18
Identity = 41/91 (45.05%), Postives = 58/91 (63.74%), Query Frame = 2
Query:  113 AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGNANVAAGLPRQCGVSIPYKISPNTDCSRV 385
            AITC  VTG+L PC+ +LR+GG+ P P CC G + L GA RT  DR+ AC C K A   +    ++A+ LP +CG+S    I+PN +C+ +
Sbjct:   26 AITCNDVTGNLTPCLPYLRSGGK-PTPACCAGAKKLLGATRTQADRRTACKCAKTAAPQLKVRPDMASSLPGKCGISTSIPINPNVNCNTI 115          
BLAST of EY688650 vs. ExPASy Swiss-Prot
Match: NLTPC_ARATH (Non-specific lipid-transfer protein 12 OS=Arabidopsis thaliana GN=LTP12 PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.057e-18
Identity = 46/96 (47.92%), Postives = 59/96 (61.46%), Query Frame = 2
Query:  101 PVTNAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPG-NANVAAGLPRQCGVSIPYKISPNTDCSRV 385
            P  + I CG VT +LA C+ +L   G  P   CC GV+SL   A+TTPDR+  C CLK A + I G N ++ A LP  CGVSIPY IS +T+C  +
Sbjct:   21 PTESTIQCGTVTSTLAQCLTYLTNSGPLPSQ-CCVGVKSLYQLAQTTPDRKQVCECLKLAGKEIKGLNTDLVAALPTTCGVSIPYPISFSTNCDSI 115          
BLAST of EY688650 vs. ExPASy Swiss-Prot
Match: NLTP5_ARATH (Non-specific lipid-transfer protein 5 OS=Arabidopsis thaliana GN=LTP5 PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.162e-17
Identity = 49/94 (52.13%), Postives = 59/94 (62.77%), Query Frame = 2
Query:  113 AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPG--NANVAAGLPRQCGVSIPYKISPNTDCSRVR 388
            AI+CG VTGSL  C  +L  GG F P  CC+GV+ LN  ARTT DRQ AC C++ A R++    NA  AA LP  C V I Y IS  T+C+ VR
Sbjct:   26 AISCGAVTGSLGQCYNYLTRGG-FIPRGCCSGVQRLNSLARTTRDRQQACRCIQGAARALGSRLNAGRAARLPGACRVRISYPISARTNCNTVR 118          
BLAST of EY688650 vs. ExPASy Swiss-Prot
Match: NLTP3_ORYSJ (Non-specific lipid-transfer protein 3 OS=Oryza sativa subsp. japonica GN=LTP110-A PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.162e-17
Identity = 40/92 (43.48%), Postives = 60/92 (65.22%), Query Frame = 2
Query:  113 AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPG-NANVAAGLPRQCGVSIPYKISPNTDCSRV 385
            A++CG VT S+APC++++      P   CC+GVR+LNG A ++ DR+ AC+CLK    S    N   AA +P +CGVS+ + IS + DCS++
Sbjct:   29 AVSCGDVTSSIAPCLSYVMGRESSPSSSCCSGVRTLNGKASSSADRRTACSCLKNMASSFRNLNMGNAASIPSKCGVSVAFPISTSVDCSKI 120          
BLAST of EY688650 vs. ExPASy Swiss-Prot
Match: NLTP3_ORYSI (Non-specific lipid-transfer protein 3 OS=Oryza sativa subsp. indica GN=LTP110-A PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.162e-17
Identity = 40/92 (43.48%), Postives = 60/92 (65.22%), Query Frame = 2
Query:  113 AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPG-NANVAAGLPRQCGVSIPYKISPNTDCSRV 385
            A++CG VT S+APC++++      P   CC+GVR+LNG A ++ DR+ AC+CLK    S    N   AA +P +CGVS+ + IS + DCS++
Sbjct:   29 AVSCGDVTSSIAPCLSYVMGRESSPSSSCCSGVRTLNGKASSSADRRTACSCLKNMASSFRNLNMGNAASIPSKCGVSVAFPISTSVDCSKI 120          
BLAST of EY688650 vs. ExPASy Swiss-Prot
Match: NLTP1_WHEAT (Non-specific lipid-transfer protein (Fragment) OS=Triticum aestivum PE=1 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 1.517e-17
Identity = 44/92 (47.83%), Postives = 61/92 (66.30%), Query Frame = 2
Query:  113 AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPG-NANVAAGLPRQCGVSIPYKISPNTDCSRV 385
            AI CG V   + PC+++++ GG  P   CC+GV++L+  AR+  DRQ+ACNCLK   R I   N + A  +P +CGV++PY IS N DCSRV
Sbjct:   23 AIDCGHVDSLVRPCLSYVQ-GGPGPSGQCCDGVKNLHNQARSQSDRQSACNCLKGIARGIHNLNEDNARSIPPKCGVNLPYTISLNIDCSRV 113          
The following BLAST results are available for this feature:
BLAST of EY688650 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 76
Match NameE-valueIdentityDescription
NLTP1_HORVU2.765e-1947.83Non-specific lipid-transfer protein 1 OS=Hordeum v... [more]
NLTP2_ARATH6.161e-1953.00Non-specific lipid-transfer protein 2 OS=Arabidops... [more]
NLTP_AMACA1.051e-1848.94Non-specific lipid-transfer protein OS=Amaranthus ... [more]
NLTP1_AMAHP1.051e-1848.94Non-specific lipid-transfer protein 1 OS=Amaranthu... [more]
NLTP1_HELAN1.372e-1845.05Non-specific lipid-transfer protein AP10 OS=Helian... [more]
NLTPC_ARATH3.057e-1847.92Non-specific lipid-transfer protein 12 OS=Arabidop... [more]
NLTP5_ARATH1.162e-1752.13Non-specific lipid-transfer protein 5 OS=Arabidops... [more]
NLTP3_ORYSJ1.162e-1743.48Non-specific lipid-transfer protein 3 OS=Oryza sat... [more]
NLTP3_ORYSI1.162e-1743.48Non-specific lipid-transfer protein 3 OS=Oryza sat... [more]
NLTP1_WHEAT1.517e-1747.83Non-specific lipid-transfer protein (Fragment) OS=... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-090-G08-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY688650 ID=EY688650; Name=EY688650; organism=Citrus sinensis; type=EST; length=596bp
CTGATAACTAGCTATAACCAAGCAAAAGCCTCCCTGAAAAATCCTCATGG
CTGCTCTTAAGCTTGTTTGTGCTTTGCTTTTGTGCATTCTGGTGACTGCC
CCAGTGACTAATGCCATAACATGTGGGCAGGTGACAGGCTCCTTGGCTCC
ATGCATCGCTTTCTTGAGAACTGGAGGGCGTTTTCCTCCACCCCCATGCT
GTAACGGCGTCAGGTCTCTCAACGGCGCCGCCAGAACCACCCCTGACCGC
CAAGCTGCATGCAACTGCTTGAAGCAAGCTTACCGATCAATCCCCGGCAA
CGCTAATGTTGCCGCTGGCCTTCCTCGTCAATGTGGAGTCAGCATTCCTT
ACAAGATCAGCCCCAACACTGACTGCTCTAGGGTCAGGTGAAGTTGAGTT
TGAGCTCTGTGACTTTCCAAGTATGATTGACTGAGAAGAATAAATAAATA
AAGAATATATATGTTAATTTCTTTGTCCGAACGAGTCTCCACTTGTGTGA
GTCTCACTCTCATGTCATGTTTGTATCTTTGCTTTTAATATCATATTAAA
TATGTAAACGTGATCTGTGTTTTGAGTGATTAAAAAAAAAAAAAAA
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