EY688650

Overview
NameEY688650
Unique NameEY688650
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length596
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY688650_ssr439 microsatellite EY688650_ssr439:439..450. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2668 contig Csv1_Contig2668:176..774. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY688650 vs. ExPASy Swiss-Prot
Match: NLTPB_ARATH (Non-specific lipid-transfer protein 11 OS=Arabidopsis thaliana GN=LTP11 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.285e-16
Identity = 44/92 (47.83%), Postives = 54/92 (58.70%), Query Frame = 2
Query:  113 AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPG-NANVAAGLPRQCGVSIPYKISPNTDCSRV 385
            AI C QV   LA C+ +L+ GG  P P CCNG+ SL  AA    DRQ ACNCLK    +IPG N + A  LP +CGV+I    S   DC+ +
Sbjct:   28 AIACPQVNMYLAQCLPYLKAGGN-PSPMCCNGLNSLKAAAPEKADRQVACNCLKSVANTIPGINDDFAKQLPAKCGVNIGVPFSKTVDCNSI 118          
BLAST of EY688650 vs. ExPASy Swiss-Prot
Match: NLTP8_ARATH (Non-specific lipid-transfer protein 8 OS=Arabidopsis thaliana GN=LTP8 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.862e-16
Identity = 37/92 (40.22%), Postives = 53/92 (57.61%), Query Frame = 2
Query:  110 NAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGNANVAAGLPRQCGVSIPYKISPNTDCSRV 385
            +AI+C  V   L PC+++L +G   PP  CC+GV+SL  A  T+ D++AAC C+K    S+     +A  L   CG S+P   SP  DC+ V
Sbjct:   24 SAISCSVVLQDLQPCVSYLTSGSGNPPETCCDGVKSLAAATTTSADKKAACQCIKSVANSVTVKPELAQALASNCGASLPVDASPTVDCTTV 115          
BLAST of EY688650 vs. ExPASy Swiss-Prot
Match: NLTP_PINTA (Non-specific lipid-transfer protein OS=Pinus taeda PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 8.326e-16
Identity = 41/96 (42.71%), Postives = 52/96 (54.17%), Query Frame = 2
Query:  101 PVTNAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGNANVAAGLPRQCGVS-IPYKISPNTDCSRV 385
            PV  AI+C QV  ++ PC  +L      P   CC  +R L+   + TPDRQA CNCLK   +S       AA LP  C V+ +   ISPN DCS+V
Sbjct:   27 PVEGAISCNQVVSAMTPCATYLIGNAATPAATCCPSIRGLDSQVKATPDRQAVCNCLKTQAKSYGVKLGKAANLPGLCKVTDLNVPISPNVDCSKV 122          
BLAST of EY688650 vs. ExPASy Swiss-Prot
Match: NLTP6_ARATH (Non-specific lipid-transfer protein 6 OS=Arabidopsis thaliana GN=LTP6 PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.420e-15
Identity = 38/95 (40.00%), Postives = 55/95 (57.89%), Query Frame = 2
Query:  113 AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSI---PGNANVAAGLPRQCGVSIPYKISPNTDCSRVR 388
            A++C  V   L PC++++  GG  P   CCNG+ +L   A+T+ DRQ  C C+K A   +   P     A  LP +CGV +PYK SP+TDC  ++
Sbjct:   20 AVSCNTVIADLYPCLSYVTQGGPVPTL-CCNGLTTLKSQAQTSVDRQGVCRCIKSAIGGLTLSPRTIQNALELPSKCGVDLPYKFSPSTDCDSIQ 113          
BLAST of EY688650 vs. ExPASy Swiss-Prot
Match: NLTPA_RICCO (Non-specific lipid-transfer protein A OS=Ricinus communis PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.202e-14
Identity = 40/91 (43.96%), Postives = 52/91 (57.14%), Query Frame = 2
Query:  116 ITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPG-NANVAAGLPRQCGVSIPYKISPNTDCSRV 385
            + CGQV  SLA CI FL  G   P   CC GV++L   A T+ DR+AAC C+K A    P    + A+ LP++CGV I   IS  T+C  +
Sbjct:    1 VDCGQVNSSLASCIPFLTGGVASPSASCCAGVQNLKTLAPTSADRRAACECIKAAAARFPTIKQDAASSLPKKCGVDINIPISKTTNCQAI 91          
BLAST of EY688650 vs. ExPASy Swiss-Prot
Match: NLTPA_ARATH (Non-specific lipid-transfer protein 10 OS=Arabidopsis thaliana GN=LTP10 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.202e-14
Identity = 36/95 (37.89%), Postives = 56/95 (58.95%), Query Frame = 2
Query:  113 AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGNA---NVAAGLPRQCGVSIPYKISPNTDCSRVR 388
            AI+C  V  +L PC+ ++  GG  P   CCNG+R L+  A +  D+Q  C C+K     +  ++     AA LP +CGV +PYKI P+T+C+ ++
Sbjct:   23 AISCNAVQANLYPCVVYVVQGGAIPYS-CCNGIRMLSKQATSASDKQGVCRCIKSVVGRVSYSSIYLKKAAALPGKCGVKLPYKIDPSTNCNSIK 116          
The following BLAST results are available for this feature:
BLAST of EY688650 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 76
Match NameE-valueIdentityDescription
NLTPB_ARATH1.285e-1647.83Non-specific lipid-transfer protein 11 OS=Arabidop... [more]
NLTP8_ARATH2.862e-1640.22Non-specific lipid-transfer protein 8 OS=Arabidops... [more]
NLTP_PINTA8.326e-1642.71Non-specific lipid-transfer protein OS=Pinus taeda... [more]
NLTP6_ARATH1.420e-1540.00Non-specific lipid-transfer protein 6 OS=Arabidops... [more]
NLTPA_RICCO1.202e-1443.96Non-specific lipid-transfer protein A OS=Ricinus c... [more]
NLTPA_ARATH1.202e-1437.89Non-specific lipid-transfer protein 10 OS=Arabidop... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-090-G08-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY688650 ID=EY688650; Name=EY688650; organism=Citrus sinensis; type=EST; length=596bp
CTGATAACTAGCTATAACCAAGCAAAAGCCTCCCTGAAAAATCCTCATGG
CTGCTCTTAAGCTTGTTTGTGCTTTGCTTTTGTGCATTCTGGTGACTGCC
CCAGTGACTAATGCCATAACATGTGGGCAGGTGACAGGCTCCTTGGCTCC
ATGCATCGCTTTCTTGAGAACTGGAGGGCGTTTTCCTCCACCCCCATGCT
GTAACGGCGTCAGGTCTCTCAACGGCGCCGCCAGAACCACCCCTGACCGC
CAAGCTGCATGCAACTGCTTGAAGCAAGCTTACCGATCAATCCCCGGCAA
CGCTAATGTTGCCGCTGGCCTTCCTCGTCAATGTGGAGTCAGCATTCCTT
ACAAGATCAGCCCCAACACTGACTGCTCTAGGGTCAGGTGAAGTTGAGTT
TGAGCTCTGTGACTTTCCAAGTATGATTGACTGAGAAGAATAAATAAATA
AAGAATATATATGTTAATTTCTTTGTCCGAACGAGTCTCCACTTGTGTGA
GTCTCACTCTCATGTCATGTTTGTATCTTTGCTTTTAATATCATATTAAA
TATGTAAACGTGATCTGTGTTTTGAGTGATTAAAAAAAAAAAAAAA
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