EY688645

Overview
NameEY688645
Unique NameEY688645
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length886
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY688645 vs. ExPASy Swiss-Prot
Match: RBS2_ACECL (Ribulose bisphosphate carboxylase small chain 2 (Fragment) OS=Acetabularia cliftonii GN=RBCS-2 PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.039e-13
Identity = 32/59 (54.24%), Postives = 41/59 (69.49%), Query Frame = 3
Query:  264 SPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFL 440
            S  Y D RYWTMWKLPM+GCTD +QVL E+    K +P +++R++ FD  RQVQ   FL
Sbjct:   10 SSTYQDNRYWTMWKLPMFGCTDGSQVLSEIQACTKAFPDAYIRLVCFDANRQVQISGFL 68          
BLAST of EY688645 vs. ExPASy Swiss-Prot
Match: RBS_RHOCA (Ribulose bisphosphate carboxylase small chain OS=Rhodobacter capsulatus GN=cbbS PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.933e-13
Identity = 35/102 (34.31%), Postives = 56/102 (54.90%), Query Frame = 3
Query:  120 KKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQ 425
            +K  T SYLPP+ +  + +++ +++++GW P +E            H+ P +    YW MWKLPM+G TD   +L E+    +  P   VR+IG+DN  Q Q
Sbjct:   17 RKMGTFSYLPPMGEAEIRRQVEWIVKNGWNPGIE------------HTEPDFAAQIYWYMWKLPMFGETDVDAILAELKACHEANPGHHVRLIGYDNFTQSQ 106          
BLAST of EY688645 vs. ExPASy Swiss-Prot
Match: RBS_NITVU (Ribulose bisphosphate carboxylase small chain OS=Nitrobacter vulgaris GN=cbbS PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.933e-13
Identity = 39/116 (33.62%), Postives = 61/116 (52.59%), Query Frame = 3
Query:   93 MKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFL 440
            M V     LKK+ET SYLP ++ E + ++I++ +  GW P +E   EKG   +            YW MWKLP++G      V+ E+    +E+P   VR + +DN  Q Q ++F+
Sbjct:    1 MAVQAYRSLKKYETFSYLPQMTPEQVRRQIAHAIAQGWNPAVE-HTEKGTPAK----------ASYWYMWKLPLFGEQSVDAVVAEIEACHREFPDQMVRFVAYDNYAQSQGMAFV 105          
BLAST of EY688645 vs. ExPASy Swiss-Prot
Match: RBS1_THIFE (Ribulose bisphosphate carboxylase small chain 1 OS=Thiobacillus ferrooxidans GN=cbbS1 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 7.749e-13
Identity = 37/106 (34.91%), Postives = 55/106 (51.89%), Query Frame = 3
Query:  123 KFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFL 440
            K+ET SYLP +  E + ++I+YL+  GW P +E            H  P      YW MWKLPM+G      V+ E+    + +P   VR++G+DN  Q Q  +F+
Sbjct:   12 KYETFSYLPAMGPEKMRRQIAYLINQGWNPGIE------------HVEPERASTYYWYMWKLPMFGEQSVDTVIMELEACHRAHPGHHVRLVGYDNYSQSQGSAFV 105          
BLAST of EY688645 vs. ExPASy Swiss-Prot
Match: RBS_SYNPX (Ribulose bisphosphate carboxylase small chain OS=Synechococcus sp. (strain WH8102) GN=cbbS PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.252e-11
Identity = 33/104 (31.73%), Postives = 51/104 (49.04%), Query Frame = 3
Query:  129 ETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFL 440
            ET  +LPP++ + +  +I+Y++  GW P +E            H  P      YW+ WKLP +G  D   V+ E+    + YP   VRI+G+D   Q Q   F+
Sbjct:   17 ETFGFLPPMTQDEIYDQIAYIIAQGWSPLVE------------HVHPSNSMATYWSYWKLPFFGEKDLNVVVSELEACHRAYPDHHVRIVGYDAYTQSQGACFV 108          
BLAST of EY688645 vs. ExPASy Swiss-Prot
Match: RBS_SYNPW (Ribulose bisphosphate carboxylase small chain OS=Synechococcus sp. (strain WH7803) GN=cbbS PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.252e-11
Identity = 33/104 (31.73%), Postives = 51/104 (49.04%), Query Frame = 3
Query:  129 ETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFL 440
            ET  +LPP++ + +  +I+Y++  GW P +E            H  P      YW+ WKLP +G  D   V+ E+    + YP   VRI+G+D   Q Q   F+
Sbjct:   17 ETFGFLPPMTQDEIYDQIAYIIAQGWSPLVE------------HVHPSNSMATYWSYWKLPFFGEKDLNVVVSELEACHRAYPDHHVRIVGYDAYTQSQGACFV 108          
BLAST of EY688645 vs. ExPASy Swiss-Prot
Match: RBS_HALNC (Ribulose bisphosphate carboxylase small chain OS=Halothiobacillus neapolitanus (strain ATCC 23641 / c2) GN=cbbS PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.253e-11
Identity = 34/106 (32.08%), Postives = 54/106 (50.94%), Query Frame = 3
Query:  123 KFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFL 440
            K+ET SYLPP++ E +  +I Y +  GW P +E    K  +             +YW MWKLP +G  +   VL E+   +  YP   V+++ +DN  Q   ++F+
Sbjct:   12 KYETFSYLPPMNAERIRAQIKYAIAQGWSPGIEHVEVKNSM------------NQYWYMWKLPFFGEQNVDNVLAEIEACRSAYPTHQVKLVAYDNYAQSLGLAFV 105          
The following BLAST results are available for this feature:
BLAST of EY688645 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 127
Match NameE-valueIdentityDescription
RBS2_ACECL2.039e-1354.24Ribulose bisphosphate carboxylase small chain 2 (F... [more]
RBS_RHOCA5.933e-1334.31Ribulose bisphosphate carboxylase small chain OS=R... [more]
RBS_NITVU5.933e-1333.62Ribulose bisphosphate carboxylase small chain OS=N... [more]
RBS1_THIFE7.749e-1334.91Ribulose bisphosphate carboxylase small chain 1 OS... [more]
RBS_SYNPX4.252e-1131.73Ribulose bisphosphate carboxylase small chain OS=S... [more]
RBS_SYNPW4.252e-1131.73Ribulose bisphosphate carboxylase small chain OS=S... [more]
RBS_HALNC7.253e-1132.08Ribulose bisphosphate carboxylase small chain OS=H... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C2-003-090-G03-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY688645 ID=EY688645; Name=EY688645; organism=Citrus sinensis; type=EST; length=886bp
CCGGCCTCAAGTCTTCTTCTCCTTTCCCAGCAACCAAGAAGACCAACAAT
GACATTACTTCCATTGCAAGCAACGGCGGAAGAGTCCAATGCATGAAGGT
GTGGCCACCAACTGGCTTGAAGAAGTTCGAGACTCTCTCATACCTCCCGC
CACTGTCCGATGAAGCTTTGCTCAAGGAAATCAGTTACCTTCTCCGCTCC
GGCTGGATTCCCTGCTTGGAATTCGAGTTGGAGAAAGGATGGGTGTACCG
TGAGCACCACAGCTCACCAGGATACTACGATGGACGCTACTGGACAATGT
GGAAGCTGCCCATGTATGGGTGCACAGATGCAACCCAGGTTTTGAAGGAG
GTTGGGGAGGTCCAGAAGGAATACCCACATTCATTCGTCCGAATTATCGG
ATTTGACAACAAGCGTCAAGTGCAGTGCATCAGTTTCCTATGCTGCCAAA
GCCACCAGGCGTCTAGGTTCCCAATTAAATTTGTGTAACCACCCCATGCA
ATATTGTTGATTATTATTATGTGTAACCCCCATAATTGATCCTTTCGATC
CAATGGGGGGGTAGGACAGCGCCTACCTGACCACAACCCTGCAGCTGACG
ATGCGCCAACAAATCCCCATTAAACACAACGAGAACAACACATATATAAC
AAACAAAGAAACCATAAGACAAGGACCGGGGAAGCAACACCACCAGCAGC
AGACCCAAAACCACCCCACCAACAACAAAAAANAAGCCACACACGCAAAA
AACAGCAGCAAACAGTAGACGAAAGACAGCAAACACCATTACCACAGGCA
CCCCCCGTACCCAACAACCAACCAACAACCACCACCAAAACACCCACACC
ACAGCCAAAAACCAAAAACACAAAAAAAACCAAAAA
back to top