EY688645

Overview
NameEY688645
Unique NameEY688645
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length886
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY688645 vs. ExPASy Swiss-Prot
Match: RBS_AEGTA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Aegilops tauschii GN=RBCS PE=2 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 3.801e-52
Identity = 91/146 (62.33%), Postives = 116/146 (79.45%), Query Frame = 3
Query:    3 GLKSSSPFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFL 440
            GLKS++  P ++++N       SNGGR++CM+VWP  G+KKFETLSYLPPLS E LLK++ YL+RS W+PCLEF  + G+++REH+ SPGYYDGRYWTMWKLPM+GC   TQV+ EV EV+KEYP  + RIIGFDN RQVQ +SF+
Sbjct:   18 GLKSTAGLPVSRRSNGASLGSVSNGGRIRCMQVWPIEGIKKFETLSYLPPLSTEGLLKQVDYLIRSKWVPCLEFR-KVGFIFREHNVSPGYYDGRYWTMWKLPMFGCPAPTQVIPEVEEVRKEYPDPYCRIIGFDNMRQVQSVSFI 162          
BLAST of EY688645 vs. ExPASy Swiss-Prot
Match: RBS1_PEA (Ribulose bisphosphate carboxylase small chain, chloroplastic (Fragment) OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 4.965e-52
Identity = 92/128 (71.88%), Postives = 106/128 (82.81%), Query Frame = 3
Query:   57 TSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFL 440
            T I SNG RV+CM+VWPP G KKFETLSYLPPL+ + LLKE+ YLLR GW+PCLEFEL KG+VY EH+ SP YYDGRYWTMWKLPM+G TD  QV+KEV EV   YP +FVR+IGF+N RQVQCISF+
Sbjct:    2 TDITSNGERVKCMQVWPPIGKKKFETLSYLPPLTRDQLLKEVEYLLRKGWVPCLEFELLKGFVYGEHNKSPRYYDGRYWTMWKLPMFGTTDPAQVVKEVDEVVAAYPEAFVRVIGFNNVRQVQCISFI 129          
BLAST of EY688645 vs. ExPASy Swiss-Prot
Match: RBS_PINTH (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Pinus thunbergii GN=RBCS PE=2 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 9.363e-51
Identity = 92/150 (61.33%), Postives = 118/150 (78.67%), Query Frame = 3
Query:    3 GLKSSSPFPATKKTNNDITS----IASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFL 440
            GLKS++ FP++ K +N          SNGGRV+CM+VWPP G  KFETLSYLP L++E L+KE+ YLLR+ W+PCLEF+LE G + R+++ SPGYYDGRYW MWKLPM+GCT+A+QV+ EV E  K YP +F+R+IGFDN RQVQCISF+
Sbjct:   18 GLKSTAQFPSSFKMSNAAAEWEQKTTSNGGRVRCMQVWPPFGNPKFETLSYLPTLTEEQLVKEVEYLLRNKWVPCLEFDLE-GSISRKYNRSPGYYDGRYWVMWKLPMFGCTEASQVINEVRECAKAYPKAFIRVIGFDNVRQVQCISFI 166          
BLAST of EY688645 vs. ExPASy Swiss-Prot
Match: RBS_MAIZE (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Zea mays GN=RBCS PE=1 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 1.223e-50
Identity = 90/146 (61.64%), Postives = 117/146 (80.14%), Query Frame = 3
Query:    3 GLKSSSPFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFL 440
            GLKS++  P  ++++  + ++ SNGGR++CM+VWP  G KKFETLSYLPPLS + LLK++ YLLR+GWIPCLEF  + G+VYRE+ +SP YYDGRYWTMWKLPM+GC DATQV KE+ E  K YP +F R+IGFDN +Q QC+SF+
Sbjct:   19 GLKSTASLPVARRSSRSLGNV-SNGGRIRCMQVWPAYGNKKFETLSYLPPLSTDDLLKQVDYLLRNGWIPCLEFS-KVGFVYRENSTSPCYYDGRYWTMWKLPMFGCNDATQVYKELQEAIKSYPDAFHRVIGFDNIKQTQCVSFI 162          
BLAST of EY688645 vs. ExPASy Swiss-Prot
Match: RBS_LARLA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Larix laricina GN=RBCS PE=3 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 6.710e-49
Identity = 91/150 (60.67%), Postives = 114/150 (76.00%), Query Frame = 3
Query:    3 GLKSSSPFPATKKTNNDITS----IASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFL 440
            GLKS + FP++K  +N          SNG RV+CM+VWPP   KKFETLSYLP L+ E L+KE+ YLL++ W+PCLEFE E G + R + +SPGYYDGRYW MWKLPM+GCT+A+QVL EV E  K YP++F+R+IGFDN RQVQCISF+
Sbjct:   34 GLKSMAQFPSSKTMSNAGAEWEQKTTSNGSRVRCMQVWPPYANKKFETLSYLPRLTPEQLVKEVEYLLKNKWVPCLEFE-EDGEIKRVYGNSPGYYDGRYWVMWKLPMFGCTEASQVLNEVNECAKAYPNAFIRVIGFDNVRQVQCISFI 182          
BLAST of EY688645 vs. ExPASy Swiss-Prot
Match: RBS_SACHY (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Saccharum hybrid GN=RBCS PE=3 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 1.184e-45
Identity = 85/146 (58.22%), Postives = 110/146 (75.34%), Query Frame = 3
Query:    3 GLKSSSPFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFL 440
            GLKS++  P  +++   +  + SNGGR++CM+VWP  G KKFETLSYLPPL+ E LLK++ YLLR+ W+PCLEF  E G+VYRE+ +SP YYDGRYWTMWKLPM+GCTDA+QV KE+ E    YP     I+GFDN RQ Q ++F+
Sbjct:   18 GLKSTASLPVARRSTTSLAKV-SNGGRIRCMQVWPAYGNKKFETLSYLPPLTQEQLLKQVDYLLRNNWVPCLEFSKE-GFVYRENSTSPCYYDGRYWTMWKLPMFGCTDASQVYKELQEAIASYP-ELRAILGFDNIRQTQWLTFI 160          
BLAST of EY688645 vs. ExPASy Swiss-Prot
Match: RBS1_SPIOL (Ribulose bisphosphate carboxylase small chain OS=Spinacia oleracea GN=RBCS PE=1 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 7.677e-45
Identity = 82/116 (70.69%), Postives = 97/116 (83.62%), Query Frame = 3
Query:   93 MKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFL 440
            M+VWPP GLKKFETLSYLPPL+ E LL E++YLL  GWIP LEFE++ G+VYREH  SPGYYDGRYWTMWKLPM+G TD  QV+ EV EV+K  P +FVR IGF++KR+VQCISF+
Sbjct:    1 MQVWPPLGLKKFETLSYLPPLTTEQLLAEVNYLLVKGWIPPLEFEVKDGFVYREHDKSPGYYDGRYWTMWKLPMFGGTDPAQVVNEVEEVKKAPPDAFVRFIGFNDKREVQCISFI 116          
BLAST of EY688645 vs. ExPASy Swiss-Prot
Match: RBS3_WHEAT (Ribulose bisphosphate carboxylase small chain clone 512 (Fragment) OS=Triticum aestivum PE=3 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.770e-41
Identity = 73/101 (72.28%), Postives = 91/101 (90.10%), Query Frame = 3
Query:  138 SYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFL 440
            +YLPPLS EALLK++ YL+RS W+PCLEF  + G+++REH++SPGYYDGRYWTMWKLPM+GCTDATQV+ EV EV+KEYP ++VRIIGFDN RQVQC+SF+
Sbjct:    1 AYLPPLSTEALLKQVDYLIRSKWVPCLEFS-KVGFIFREHNASPGYYDGRYWTMWKLPMFGCTDATQVINEVEEVKKEYPDAYVRIIGFDNMRQVQCVSFI 100          
BLAST of EY688645 vs. ExPASy Swiss-Prot
Match: RBS_MARPA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Marchantia paleacea GN=RBCS PE=2 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 3.019e-41
Identity = 77/132 (58.33%), Postives = 98/132 (74.24%), Query Frame = 3
Query:   57 TSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEY-PHSFVRIIGFDNKRQVQCISFLCCQ 449
            T   +NG RV CM+VW P    KFETLSYLPPLS +AL K+I Y+++SGW PC+EF+++ G V RE  + PGYYDGRYWTMWKLPM+GCTD+  VL+E+ E +K Y    ++R +GFDN RQVQC SF+  Q
Sbjct:   47 TKTQTNGSRVSCMQVWEPYNNLKFETLSYLPPLSQDALAKQIDYVIKSGWAPCIEFDVQ-GTVTREGSTMPGYYDGRYWTMWKLPMFGCTDSASVLREIEECKKLYGKKCYIRCLGFDNTRQVQCASFIVHQ 177          
BLAST of EY688645 vs. ExPASy Swiss-Prot
Match: RBS_CHLMO (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Chlamydomonas moewusii GN=RBCS PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 7.453e-32
Identity = 59/131 (45.04%), Postives = 86/131 (65.65%), Query Frame = 3
Query:   96 KVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFE------LEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLCCQSHQASRF 470
            KVW P   K++ET SYLPPL+++ + +++ Y++ +GW PCLEF       +      R    S GYYD RYWTMWKLPM+GCTD +QVL+EV   Q  +P+ ++R++ FDN +QVQC+ FL  +   A+ +
Sbjct:   30 KVWQPVNNKQYETFSYLPPLTNQKIGRQVDYIINNGWTPCLEFADPSTSFVSNANAVRLQGVSAGYYDNRYWTMWKLPMFGCTDPSQVLREVSACQVAFPNVYIRLVAFDNVKQVQCMGFLVQRPRNAAEY 160          
The following BLAST results are available for this feature:
BLAST of EY688645 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 127
Match NameE-valueIdentityDescription
RBS_AEGTA3.801e-5262.33Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS1_PEA4.965e-5271.88Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_PINTH9.363e-5161.33Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_MAIZE1.223e-5061.64Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_LARLA6.710e-4960.67Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_SACHY1.184e-4558.22Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS1_SPIOL7.677e-4570.69Ribulose bisphosphate carboxylase small chain OS=S... [more]
RBS3_WHEAT1.770e-4172.28Ribulose bisphosphate carboxylase small chain clon... [more]
RBS_MARPA3.019e-4158.33Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_CHLMO7.453e-3245.04Ribulose bisphosphate carboxylase small chain, chl... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-090-G03-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY688645 ID=EY688645; Name=EY688645; organism=Citrus sinensis; type=EST; length=886bp
CCGGCCTCAAGTCTTCTTCTCCTTTCCCAGCAACCAAGAAGACCAACAAT
GACATTACTTCCATTGCAAGCAACGGCGGAAGAGTCCAATGCATGAAGGT
GTGGCCACCAACTGGCTTGAAGAAGTTCGAGACTCTCTCATACCTCCCGC
CACTGTCCGATGAAGCTTTGCTCAAGGAAATCAGTTACCTTCTCCGCTCC
GGCTGGATTCCCTGCTTGGAATTCGAGTTGGAGAAAGGATGGGTGTACCG
TGAGCACCACAGCTCACCAGGATACTACGATGGACGCTACTGGACAATGT
GGAAGCTGCCCATGTATGGGTGCACAGATGCAACCCAGGTTTTGAAGGAG
GTTGGGGAGGTCCAGAAGGAATACCCACATTCATTCGTCCGAATTATCGG
ATTTGACAACAAGCGTCAAGTGCAGTGCATCAGTTTCCTATGCTGCCAAA
GCCACCAGGCGTCTAGGTTCCCAATTAAATTTGTGTAACCACCCCATGCA
ATATTGTTGATTATTATTATGTGTAACCCCCATAATTGATCCTTTCGATC
CAATGGGGGGGTAGGACAGCGCCTACCTGACCACAACCCTGCAGCTGACG
ATGCGCCAACAAATCCCCATTAAACACAACGAGAACAACACATATATAAC
AAACAAAGAAACCATAAGACAAGGACCGGGGAAGCAACACCACCAGCAGC
AGACCCAAAACCACCCCACCAACAACAAAAAANAAGCCACACACGCAAAA
AACAGCAGCAAACAGTAGACGAAAGACAGCAAACACCATTACCACAGGCA
CCCCCCGTACCCAACAACCAACCAACAACCACCACCAAAACACCCACACC
ACAGCCAAAAACCAAAAACACAAAAAAAACCAAAAA
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