EY688628

Overview
NameEY688628
Unique NameEY688628
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length864
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY688628 vs. ExPASy Swiss-Prot
Match: PSAD_CYAPA (Photosystem I reaction center subunit II, cyanelle OS=Cyanophora paradoxa GN=psaD PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 7.177e-24
Identity = 50/80 (62.50%), Postives = 65/80 (81.25%), Query Frame = 3
Query:    3 LARKEQCLALGTRLRSKYKIK-YQFYRVFPNGEVQYLHPKDGVYPEKVNPGREGVGQNYRSIGKNVSPIEVKFTGKQVYD 239
            LARKEQC+ALG +L+ K+KI  Y+ YRV+P+GEVQ+LHPKDGV+PEKVNPGR  VG N R IG+N  P ++KF G++ +D
Sbjct:  136 LARKEQCIALGAQLKDKFKITDYKIYRVYPSGEVQFLHPKDGVFPEKVNPGRVAVGSNKRRIGQNPDPAKLKFKGQETFD 215          
BLAST of EY688628 vs. ExPASy Swiss-Prot
Match: PSAD_SYNY3 (Photosystem I reaction center subunit II OS=Synechocystis sp. (strain PCC 6803) GN=psaD PE=1 SV=2)

HSP 1 Score: 110.538 bits (275), Expect = 1.224e-23
Identity = 52/83 (62.65%), Postives = 65/83 (78.31%), Query Frame = 3
Query:    3 LARKEQCLALGTRLRSKYKIK---YQFYRVFPNGEVQYLHPKDGVYPEKVNPGREGVGQNYRSIGKNVSPIEVKFTGKQVYDL 242
            LARKEQCLALGT+LR+K+K K   Y+ YRV+P+GEVQYLHP DGV+PEKVN GRE  G   R IG+N  P+ +KF+GK  Y++
Sbjct:   59 LARKEQCLALGTQLRTKFKPKIQDYKIYRVYPSGEVQYLHPADGVFPEKVNEGREAQGTKTRRIGQNPEPVTIKFSGKAPYEV 141          
BLAST of EY688628 vs. ExPASy Swiss-Prot
Match: PSAD_CHLRE (Photosystem I reaction center subunit II, chloroplastic OS=Chlamydomonas reinhardtii GN=psaD PE=1 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.599e-23
Identity = 50/75 (66.67%), Postives = 63/75 (84.00%), Query Frame = 3
Query:    9 RKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREGVGQNYRSIGKNVSPIEVKFTGKQV 233
            +KEQCLAL T+LR+K+K+   FYRVFP+G+VQYLHP DGVYPEKVN GR G  QN R IG+NV+PI+VKF+G+ +
Sbjct:  117 KKEQCLALTTQLRNKFKLTPCFYRVFPDGKVQYLHPADGVYPEKVNAGRVGANQNMRRIGQNVNPIKVKFSGRMM 191          
BLAST of EY688628 vs. ExPASy Swiss-Prot
Match: PSAD_CYACA (Photosystem I reaction center subunit II OS=Cyanidium caldarium GN=psaD PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.768e-22
Identity = 48/79 (60.76%), Postives = 65/79 (82.28%), Query Frame = 3
Query:    3 LARKEQCLALGTRLRSKYKI-KYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREGVGQNYRSIGKNVSPIEVKFTGKQVY 236
            LA+KEQCLALG +L+ K+KI  ++ YR+FPNGE Q+LHPKDGV+PEKVN GR+ +G+   +IGKN++P EVKFT K ++
Sbjct:   62 LAKKEQCLALGNQLKIKFKILNFKIYRIFPNGEAQFLHPKDGVFPEKVNEGRKPIGKIDHNIGKNLNPAEVKFTHKTIF 140          
BLAST of EY688628 vs. ExPASy Swiss-Prot
Match: PSAD_ODOSI (Photosystem I reaction center subunit II OS=Odontella sinensis GN=psaD PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.309e-22
Identity = 50/79 (63.29%), Postives = 60/79 (75.95%), Query Frame = 3
Query:    3 LARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREGVGQNYRSIGKNVSPIEVKFTGKQVYD 239
            LARKEQCLALGT+LR+     Y+ YR+FP+GEVQYLHPKDGV+PEKVNPGR  V     SIGKN +P  +KF+G   Y+
Sbjct:   60 LARKEQCLALGTQLRTFKINDYKIYRIFPSGEVQYLHPKDGVFPEKVNPGRTSVNSRGFSIGKNPNPASIKFSGITTYE 138          
BLAST of EY688628 vs. ExPASy Swiss-Prot
Match: PSAD_SKECO (Photosystem I reaction center subunit II OS=Skeletonema costatum GN=psaD PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.146e-21
Identity = 49/79 (62.03%), Postives = 59/79 (74.68%), Query Frame = 3
Query:    3 LARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREGVGQNYRSIGKNVSPIEVKFTGKQVYD 239
            LARKEQCLAL T+LR+     Y+ YR+FP+GEVQYLHPKDGV+PEKVNPGR  V     SIGKN +P  +KF+G   Y+
Sbjct:   60 LARKEQCLALSTQLRTFKINDYKIYRIFPSGEVQYLHPKDGVFPEKVNPGRTSVNSRGFSIGKNPNPASIKFSGITTYE 138          
BLAST of EY688628 vs. ExPASy Swiss-Prot
Match: PSAD_MASLA (Photosystem I reaction center subunit II OS=Mastigocladus laminosus GN=psaD PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.267e-20
Identity = 45/79 (56.96%), Postives = 58/79 (73.42%), Query Frame = 3
Query:    3 LARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREGVGQNYRSIGKNVSPIEVKFTGKQVYD 239
            LARKEQC+ALG++LR      Y+ YR++PNGE  Y+HP DGV+PEKVNPGR+ V  N R IG+N  P ++KF+G   YD
Sbjct:   60 LARKEQCIALGSQLRRLKITDYKIYRIYPNGETAYIHPADGVFPEKVNPGRQKVRYNDRRIGQNPDPAKLKFSGVATYD 138          
BLAST of EY688628 vs. ExPASy Swiss-Prot
Match: PSAD_SYNP6 (Photosystem I reaction center subunit II OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=psaD PE=1 SV=3)

HSP 1 Score: 98.9821 bits (245), Expect = 3.686e-20
Identity = 49/80 (61.25%), Postives = 59/80 (73.75%), Query Frame = 3
Query:    6 ARKEQCLALGTRLRSKYKIK---YQFYRVFPNGEVQYLHPKDGVYPEKVNPGREGVGQNYRSIGKNVSPIEVKFTGKQVY 236
            ARKEQ LALGT+LR+K+K K   Y+ YR FP  +V YLHPKDGV+PEKVN GR   G+  R IG+N +P  +KFTGKQ Y
Sbjct:   61 ARKEQALALGTQLRTKFKPKIESYKIYRFFPGADVGYLHPKDGVFPEKVNEGRSFAGKVDRRIGQNPNPATIKFTGKQPY 140          
BLAST of EY688628 vs. ExPASy Swiss-Prot
Match: PSAD_ANAVT (Photosystem I reaction center subunit II OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=psaD PE=1 SV=3)

HSP 1 Score: 95.1301 bits (235), Expect = 5.323e-19
Identity = 47/80 (58.75%), Postives = 61/80 (76.25%), Query Frame = 3
Query:    3 LARKEQCLALGTRLRSKYKI-KYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREGVGQNYRSIGKNVSPIEVKFTGKQVYD 239
            +ARKE  +ALG +LR K+KI  Y+ YR+ P+GE  ++HP DGV+PEKVNPGRE V  N RSIG+N +P +VKF+GK  YD
Sbjct:   60 IARKEYGIALGGQLR-KFKITNYKIYRILPSGETTFIHPADGVFPEKVNPGREKVRFNARSIGENPNPSQVKFSGKATYD 138          
BLAST of EY688628 vs. ExPASy Swiss-Prot
Match: PSAD_THEVL (Photosystem I reaction center subunit II OS=Thermosynechococcus vulcanus GN=psaD PE=1 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 9.079e-19
Identity = 46/79 (58.23%), Postives = 57/79 (72.15%), Query Frame = 3
Query:    6 ARKEQCLALGTRLRSKYKIK-YQFYRVFPNGEVQYLHPKDGVYPEKVNPGREGVGQNYRSIGKNVSPIEVKFTGKQVYD 239
            ARKEQCLAL  +     KI  Y+ YR+FP+GE   +HPKDGV+PEKVN GRE V    RSIG+N +P ++KFTGK+ YD
Sbjct:   60 ARKEQCLALAAQQLRPRKINDYKIYRIFPDGETVLIHPKDGVFPEKVNKGREAVNSVPRSIGQNPNPSQLKFTGKKPYD 138          
The following BLAST results are available for this feature:
BLAST of EY688628 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
PSAD_CYAPA7.177e-2462.50Photosystem I reaction center subunit II, cyanelle... [more]
PSAD_SYNY31.224e-2362.65Photosystem I reaction center subunit II OS=Synech... [more]
PSAD_CHLRE1.599e-2366.67Photosystem I reaction center subunit II, chloropl... [more]
PSAD_CYACA1.768e-2260.76Photosystem I reaction center subunit II OS=Cyanid... [more]
PSAD_ODOSI2.309e-2263.29Photosystem I reaction center subunit II OS=Odonte... [more]
PSAD_SKECO1.146e-2162.03Photosystem I reaction center subunit II OS=Skelet... [more]
PSAD_MASLA1.267e-2056.96Photosystem I reaction center subunit II OS=Mastig... [more]
PSAD_SYNP63.686e-2061.25Photosystem I reaction center subunit II OS=Synech... [more]
PSAD_ANAVT5.323e-1958.75Photosystem I reaction center subunit II OS=Anabae... [more]
PSAD_THEVL9.079e-1958.23Photosystem I reaction center subunit II OS=Thermo... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-090-E04-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY688628 ID=EY688628; Name=EY688628; organism=Citrus sinensis; type=EST; length=864bp
AGCTGGCTAGGAAAGAGCAGTGCTTGGCTCTGGGGACAAGGCTGAGGTCC
AAGTACAAGATTAAGTACCAGTTTTACCGAGTGTTTCCCAATGGAGAGGT
TCAGTATTTGCATCCCAAGGATGGTGTTTATCCTGAGAAAGTGAACCCCG
GAAGGGAAGGAGTTGGGCAGAATTACAGGTCTATTGGTAAGAATGTGAGT
CCTATTGAGGTCAAGTTTACAGGGAAGCAAGTGTATGATCTGTAAATTTA
AATTGTAAGCTGCTAAGCTGACGGGCCTCGGATGATCTGTTGATTAATTG
TTGTGATCCTTTACTTGTTTGCATTCGTGATTTGAGTACGTAGAGAATAC
AGTGTGAAAGGATAAGTTCGATAAGGGGCCCAACAAAGCCGCCGGGGGGG
GGGGGGGGAGCCCCACCCACATGGGCGAGACCCCGGGCACCCCGACCCGC
CCCCCGCACCACCCCCCCGCGCACGCGGGCCGCCGCAGGGGAACACGCGA
GCGCGGAGCCCCGCCGAGGACAAACGCAACCACCGGCCCCACACGACCGC
CAAGAGAACCCAAACCGTCGCGGGGTACTCAGCCCGCTCAACGGGCGGAC
GCGCGACGAGAAAAAACGCCGAAGGGAACCAGACGAAAACCACAGACACC
ACAAAACCACAAGCAACAACAAAACCAAAGACAAAGAGAAAAAACACGAC
GGAGCAGAACAACGACAGGCAGACAAGAGACGCGAACCCAAGACGCCAGG
AACCCCGCCCGCCACGAACGCGCCAGCCAAGACCAAACACGAACCAACCG
ACGGCCGGGGCACGGCAGGAGGGAGCGGACAGCAGCCCTACCAAGAAAAA
AACGCGAAACGAGC
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