EY688622

Overview
NameEY688622
Unique NameEY688622
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length837
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY688622 vs. ExPASy Swiss-Prot
Match: PUB3_SCHPO (E3 ubiquitin-protein ligase pub3 OS=Schizosaccharomyces pombe GN=pub3 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.584e-20
Identity = 60/192 (31.25%), Postives = 99/192 (51.56%), Query Frame = 2
Query:    2 SKEFLTDISKSAFAPEYGLFSQTSTSDRLLIPNAAARYLENGIQMFEFLGRVVGKALYEGILLDYAFSHVFVQKLLGRYSFLDELSTLDPELYRNLMYVKHYDGDVKELCLDFTVTEESFGKRHVIELKPGGGDTSVTNDNKMQYVHAMADYKLNRQIFPFSNAFYRGLTDLISPSCVK*FNASEFHQFLSG 577
            S+EF   +S   F P Y LF  ++  +  L  N  +      +  F F+GRV+G A++    LD  F     +KLL +   L ++ ++D E YR+L +V   D     L L F+V E+ FG+   +EL   G +  VT +NK +YV  + ++++++++    NAFY G  +L+SP  V  F+  E    + G
Sbjct:  477 SREFFFLLSHKMFDPIYCLFEYSAVDNYTLQINPHSSINPEHLNYFRFIGRVIGLAIFHRRFLDAFFVVSLYKKLLRKKVSLADMESIDAEFYRSLKWVLEND-ITGILDLTFSVEEDHFGEVRTVELITNGENIEVTEENKKKYVDLVTEWRVSKRVEQQFNAFYSGFVELVSPDLVNVFDERELELLIGG 667          
BLAST of EY688622 vs. ExPASy Swiss-Prot
Match: TOM1_YEAST (E3 ubiquitin-protein ligase TOM1 OS=Saccharomyces cerevisiae GN=TOM1 PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.702e-20
Identity = 56/193 (29.02%), Postives = 98/193 (50.78%), Query Frame = 2
Query:    2 SKEFLTDISKSAFAPEYGLFSQTSTSDRLLIPNAAARYLENGIQMFEFLGRVVGKALYEGILLDYAFSHVFVQKLLGRYSFLDELSTLDPELYRNLMYVKHYDGDVKELCLD-FTVTEESFGKRHVIELKPGGGDTSVTNDNKMQYVHAMADYKLNRQIFPFSNAFYRGLTDLISPSCVK*FNASEFHQFLSG 577
            ++E+   +S+  F P+Y LF    +      PN  +      +  F+F+G ++GKA+ +   LD  FS    + +LGR   L ++ +LDP+ Y++L+++   + D+ ++  + F+V  + +G+  VI L  GG D  VT  NK  YV  + +YKL   +    + F  G   LIS   +  F+  E    +SG
Sbjct: 2957 TREWYQVLSRQMFNPDYALFLPVPSDKTTFHPNRTSGINPEHLSFFKFIGMIIGKAIRDQCFLDCHFSREVYKNILGRPVSLKDMESLDPDYYKSLVWI--LENDITDIIEETFSVETDDYGEHKVINLIEGGKDIIVTEANKQDYVKKVVEYKLQTSVKEQMDNFLVGFYALISKDLITIFDEQELELLISG 3147          
BLAST of EY688622 vs. ExPASy Swiss-Prot
Match: UPL1_ARATH (E3 ubiquitin-protein ligase UPL1 OS=Arabidopsis thaliana GN=UPL1 PE=1 SV=3)

HSP 1 Score: 97.8265 bits (242), Expect = 7.861e-20
Identity = 64/201 (31.84%), Postives = 105/201 (52.24%), Query Frame = 2
Query:    2 SKEFLTDISKSAFAPEYGLFSQTSTSDRLLIPNAAARYLENGIQMFEFLGRVVGKALYEGILLDYAFSHVFVQKLLGRYSFLDELSTLDPELYRNLMYVKHYDGDVKELCLDFTVTEESFGKRHVI---------ELKPGGGDTSVTNDNKMQYVHAMADYKLNRQIFPFSNAFYRGLTDLISPSCVK*FNASEFHQFLSG 577
            ++E+   +S+  F     LF+ T  +D    PN  + Y    +  F+F+GR+V KAL++G LLD  F+  F + +LG      ++  +DP+ Y+NL ++   + DV ++ LD T + ++  ++H++         ELKPGG +  VT + K +YV  +A + L   I P  NAF  G  +LI    V  FN  E    +SG
Sbjct: 3364 TREWYQLLSRVIFDKGALLFT-TVGNDATFQPNPNSVYQTEHLSYFKFVGRMVAKALFDGQLLDVYFTRSFYKHILGVKVTYHDIEAVDPDYYKNLKWL--LENDVSDI-LDLTFSMDADEEKHILYEKTEVTDYELKPGGRNIRVTEETKHEYVDLVAGHILTNAIRPQINAFLEGFNELIPRELVSIFNDKELELLISG 3560          
BLAST of EY688622 vs. ExPASy Swiss-Prot
Match: PUB1_SCHPO (E3 ubiquitin-protein ligase pub1 OS=Schizosaccharomyces pombe GN=pub1 PE=1 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 3.901e-19
Identity = 57/193 (29.53%), Postives = 101/193 (52.33%), Query Frame = 2
Query:    2 SKEFLTDISKSAFAPEYGLFSQTSTSDRLLIPNAAARYLENGIQMFEFLGRVVGKALYEGILLDYAFSHVFVQKLLGRYSFLDELSTLDPELYRNLMYVKHYDGDVKE-LCLDFTVTEESFGKRHVIELKPGGGDTSVTNDNKMQYVHAMADYKLNRQIFPFSNAFYRGLTDLISPSCVK*FNASEFHQFLSG 577
            S+E+   +S   F P Y LF  +S  +  L  N  +      +  F+F+GRV+G A++    +D  F   F + +L +   L ++ ++D E YR+L+++   D D+   L L F+V +  FG+   I+LKP G +  VT +NK +YV  +  +++ ++I    NAF+ G ++LI    +  F+  E    + G
Sbjct:  458 SREYFFLLSHEMFNPFYCLFEYSSVDNYTLQINPHSGINPEHLNYFKFIGRVIGLAIFHRRFVDAFFVVSFYKMILQKKVTLQDMESMDAEYYRSLVWI--LDNDITGVLDLTFSVEDNCFGEVVTIDLKPNGRNIEVTEENKREYVDLVTVWRIQKRIEEQFNAFHEGFSELIPQELINVFDERELELLIGG 648          
BLAST of EY688622 vs. ExPASy Swiss-Prot
Match: HUWE1_RAT (E3 ubiquitin-protein ligase HUWE1 (Fragment) OS=Rattus norvegicus GN=Huwe1 PE=1 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 6.654e-19
Identity = 58/192 (30.21%), Postives = 95/192 (49.48%), Query Frame = 2
Query:    5 KEFLTDISKSAFAPEYGLFSQTSTSDRLLIP-NAAARYLENGIQMFEFLGRVVGKALYEGILLDYAFSHVFVQKLLGRYSFLDELSTLDPELYRNLMYVKHYDGDVKELCLDFTVTEESFGKRHVIELKPGGGDTSVTNDNKMQYVHAMADYKLNRQIFPFSNAFYRGLTDLISPSCVK*FNASEFHQFLSG 577
            +E+   IS+  F P Y LF +TS  DR+    N ++    N +  F+F+GR+V KA+Y+  LL+  F+  F + +LG+     ++ + D   Y+ L+Y+   D       L F+   + FG   V +LKP G +  VT +NK +YVH +   ++   I     AF  G  ++I    +  F   E    +SG
Sbjct:   11 REWYMIISREMFNPMYALF-RTSPGDRVTYTINPSSHCNPNHLSYFKFVGRIVAKAVYDNRLLECYFTRSFYKHILGKSVRYTDMESEDYHFYQGLVYLLENDVSTLGYDLTFSTEVQEFGVCEVRDLKPNGANILVTEENKKEYVHLVCQMRMTGAIRKQLAAFLEGFYEIIPKRLISIFTEQELELLISG 201          
BLAST of EY688622 vs. ExPASy Swiss-Prot
Match: HUWE1_MOUSE (E3 ubiquitin-protein ligase HUWE1 OS=Mus musculus GN=Huwe1 PE=1 SV=4)

HSP 1 Score: 94.7449 bits (234), Expect = 6.654e-19
Identity = 58/192 (30.21%), Postives = 95/192 (49.48%), Query Frame = 2
Query:    5 KEFLTDISKSAFAPEYGLFSQTSTSDRLLIP-NAAARYLENGIQMFEFLGRVVGKALYEGILLDYAFSHVFVQKLLGRYSFLDELSTLDPELYRNLMYVKHYDGDVKELCLDFTVTEESFGKRHVIELKPGGGDTSVTNDNKMQYVHAMADYKLNRQIFPFSNAFYRGLTDLISPSCVK*FNASEFHQFLSG 577
            +E+   IS+  F P Y LF +TS  DR+    N ++    N +  F+F+GR+V KA+Y+  LL+  F+  F + +LG+     ++ + D   Y+ L+Y+   D       L F+   + FG   V +LKP G +  VT +NK +YVH +   ++   I     AF  G  ++I    +  F   E    +SG
Sbjct: 4066 REWYMIISREMFNPMYALF-RTSPGDRVTYTINPSSHCNPNHLSYFKFVGRIVAKAVYDNRLLECYFTRSFYKHILGKSVRYTDMESEDYHFYQGLVYLLENDVSTLGYDLTFSTEVQEFGVCEVRDLKPNGANILVTEENKKEYVHLVCQMRMTGAIRKQLAAFLEGFYEIIPKRLISIFTEQELELLISG 4256          
BLAST of EY688622 vs. ExPASy Swiss-Prot
Match: HUWE1_HUMAN (E3 ubiquitin-protein ligase HUWE1 OS=Homo sapiens GN=HUWE1 PE=1 SV=3)

HSP 1 Score: 94.7449 bits (234), Expect = 6.654e-19
Identity = 58/192 (30.21%), Postives = 95/192 (49.48%), Query Frame = 2
Query:    5 KEFLTDISKSAFAPEYGLFSQTSTSDRLLIP-NAAARYLENGIQMFEFLGRVVGKALYEGILLDYAFSHVFVQKLLGRYSFLDELSTLDPELYRNLMYVKHYDGDVKELCLDFTVTEESFGKRHVIELKPGGGDTSVTNDNKMQYVHAMADYKLNRQIFPFSNAFYRGLTDLISPSCVK*FNASEFHQFLSG 577
            +E+   IS+  F P Y LF +TS  DR+    N ++    N +  F+F+GR+V KA+Y+  LL+  F+  F + +LG+     ++ + D   Y+ L+Y+   D       L F+   + FG   V +LKP G +  VT +NK +YVH +   ++   I     AF  G  ++I    +  F   E    +SG
Sbjct: 4063 REWYMIISREMFNPMYALF-RTSPGDRVTYTINPSSHCNPNHLSYFKFVGRIVAKAVYDNRLLECYFTRSFYKHILGKSVRYTDMESEDYHFYQGLVYLLENDVSTLGYDLTFSTEVQEFGVCEVRDLKPNGANILVTEENKKEYVHLVCQMRMTGAIRKQLAAFLEGFYEIIPKRLISIFTEQELELLISG 4253          
BLAST of EY688622 vs. ExPASy Swiss-Prot
Match: TOM1_ASHGO (Probable E3 ubiquitin-protein ligase TOM1 OS=Ashbya gossypii GN=TOM1 PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.529e-18
Identity = 51/193 (26.42%), Postives = 97/193 (50.26%), Query Frame = 2
Query:    2 SKEFLTDISKSAFAPEYGLFSQTSTSDRLLIPNAAARYLENGIQMFEFLGRVVGKALYEGILLDYAFSHVFVQKLLGRYSFLDELSTLDPELYRNLMYVKHYDGDVKELCLD-FTVTEESFGKRHVIELKPGGGDTSVTNDNKMQYVHAMADYKLNRQIFPFSNAFYRGLTDLISPSCVK*FNASEFHQFLSG 577
            ++E+   +S+  F P+Y LF   ++      PN  +      +  F+F+G ++GKA+ +   LD  FS    + +LG+   L ++ +LD + Y++L+++   + D+ ++  + F+V  + +G+  VIEL   G   +VT  NK  YV  + +YKL   +      F +G   +I    +  F+  E    +SG
Sbjct: 2947 TREWYQVLSRQMFNPDYALFIPVASDKTTFRPNRTSGINPEHLSFFKFIGMIIGKAISDQCFLDCHFSREVYKNILGKPVALKDMESLDLDYYKSLIWI--LENDITDIIEETFSVETDDYGEHKVIELIENGAHVAVTEQNKHDYVKKIVEYKLQTSVKDQMENFLQGFYAIIPKDLISIFDEQELELLVSG 3137          
BLAST of EY688622 vs. ExPASy Swiss-Prot
Match: MUG30_SCHPO (Probable E3 ubiquitin-protein ligase mug30 OS=Schizosaccharomyces pombe GN=mug30 PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.529e-18
Identity = 59/199 (29.65%), Postives = 96/199 (48.24%), Query Frame = 2
Query:    5 KEFLTDISKSAFAPEYGLFSQTSTSDRLLIPNAAARYLENGIQMFEFLGRVVGKALYEGILLDYAFSHVFVQKLLGRYSFLDELSTLDPELYRNLMYVKHYDGDVKELC-LDFTVTEESFGKRHVIELKPGGGDTSVTNDNKMQYVHAMADYKLNRQIFPFSNAFYRGLTDLISPSCVK*FNASEFHQFLSGRTHDRRW 598
            +E+L  +++  F+PE+GLF     S   L  N + R  E  I  +   G ++G A++  I LD      F +KLL      ++L    P LYR L  +  ++GDVK    L+FT+  ++      +ELK GG + SV N+N+ +YV    DY LN  +    +AF+ G   +   + +  F  +E  + + G      W
Sbjct:  478 REWLLLLTRKVFSPEFGLFVNCEESSNYLWFNYSHRSKE--IDYYHMSGILMGIAIHNSINLDVQMPRAFYKKLLQLPLSFNDLDDFQPSLYRGLKELLLFEGDVKNTYGLNFTINLKAVEGFRTVELKEGGSELSVDNENRKEYVLRYVDYLLNTTVKKQFSAFFDGFMKVCGGNAISLFQDNEISKLIRGSEEVIDW 674          
BLAST of EY688622 vs. ExPASy Swiss-Prot
Match: HERC4_RAT (Probable E3 ubiquitin-protein ligase HERC4 OS=Rattus norvegicus GN=Herc4 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.303e-18
Identity = 58/196 (29.59%), Postives = 97/196 (49.49%), Query Frame = 2
Query:    5 KEFLTDISKSAFAPEYGLFSQTSTSDRLLIPNAAARYLENGIQMFEFLGRVVGKALYEGILLDYAFSHVFVQKLLGRYSFLDELSTLDPELYRNLMYVKHY-DGDVKE-LCLDFTVTEESFGKRHVIELKPGGGDTSVTNDNKMQYVHAMADYKLNRQIFPFSNAFYRGLTDLISPSCVK*FNASEFHQFLSGRTH 586
            KEF   I +    P+YG+F     S  +   +   +  E+   +F  +G + G A+Y   ++D  F     +KLL R   LD+L  L P++ R++  +  Y + D++E  CL+FT+T E+FG   V EL   G DT+V   N+ ++V A  DY  N+ +    +AF+ G   +     +  F  +E    + G T+
Sbjct:  755 KEFFLLIMRELLDPKYGMFRYYEDSRLIWFSD---KTFEDS-DLFHLIGVICGLAIYNFTIVDLHFPLALYKKLLKRKPSLDDLKELMPDVGRSMQQLLDYPEDDIEETFCLNFTITVENFGATEVKELVLNGADTAVNKQNRQEFVDAYVDYIFNKSVASLFDAFHAGFHKVCGGKVLLLFQPNELQAMVIGNTN 946          
The following BLAST results are available for this feature:
BLAST of EY688622 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
PUB3_SCHPO1.584e-2031.25E3 ubiquitin-protein ligase pub3 OS=Schizosaccharo... [more]
TOM1_YEAST2.702e-2029.02E3 ubiquitin-protein ligase TOM1 OS=Saccharomyces ... [more]
UPL1_ARATH7.861e-2031.84E3 ubiquitin-protein ligase UPL1 OS=Arabidopsis th... [more]
PUB1_SCHPO3.901e-1929.53E3 ubiquitin-protein ligase pub1 OS=Schizosaccharo... [more]
HUWE1_RAT6.654e-1930.21E3 ubiquitin-protein ligase HUWE1 (Fragment) OS=Ra... [more]
HUWE1_MOUSE6.654e-1930.21E3 ubiquitin-protein ligase HUWE1 OS=Mus musculus ... [more]
HUWE1_HUMAN6.654e-1930.21E3 ubiquitin-protein ligase HUWE1 OS=Homo sapiens ... [more]
TOM1_ASHGO2.529e-1826.42Probable E3 ubiquitin-protein ligase TOM1 OS=Ashby... [more]
MUG30_SCHPO2.529e-1829.65Probable E3 ubiquitin-protein ligase mug30 OS=Schi... [more]
HERC4_RAT3.303e-1829.59Probable E3 ubiquitin-protein ligase HERC4 OS=Ratt... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-090-D10-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY688622 ID=EY688622; Name=EY688622; organism=Citrus sinensis; type=EST; length=837bp
ATCAAAAGAGTTTTTGACTGATATATCAAAATCAGCTTTTGCTCCTGAGT
ATGGGCTATTTTCCCAAACCTCAACTTCAGACAGGCTCCTGATCCCTAAT
GCTGCCGCAAGATATCTAGAGAACGGTATCCAGATGTTTGAGTTCCTTGG
GAGAGTTGTTGGTAAAGCACTTTATGAAGGGATATTACTTGATTATGCCT
TTTCACATGTTTTTGTGCAAAAGTTGTTAGGCCGATATAGCTTCCTTGAT
GAGCTGTCAACACTTGATCCAGAGCTCTACCGGAATCTAATGTATGTCAA
GCATTATGATGGTGACGTCAAAGAACTGTGTCTGGATTTCACTGTCACAG
AAGAGTCATTTGGTAAACGACATGTTATTGAGCTAAAACCTGGTGGTGGG
GATACTAGTGTGACAAATGACAACAAGATGCAATATGTTCATGCTATGGC
TGATTATAAACTCAACCGGCAGATTTTTCCCTTCTCAAATGCATTTTACA
GAGGGTTAACTGATCTCATATCACCGTCTTGCGTGAAGTGATTTAATGCC
AGCGAATTCCATCAGTTCCTTTCGGGACGAACACATGACCGTAGATGGGT
ATCATTTGGGAGACGATACACGCGCAGACCGCGGCGATGACACACCGGAC
ACGGGACGCACACACATCACCCAGGACGCGAGAGAAGAGAAAACAACGAA
AAAAGAAAGAGAAAAGAAGCAACCAGGGACAACACAACAGACAGAACGCC
ACACCAACGCACCACCAAAAAGAGCAGCACCAGCCGACGCCCGCATCCCC
AAGAATCCCGCCAACAAGCCAACAAAGAGAGACATGA
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