EY688622

Overview
NameEY688622
Unique NameEY688622
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length837
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY688622 vs. ExPASy Swiss-Prot
Match: UBE3A_MOUSE (Ubiquitin-protein ligase E3A OS=Mus musculus GN=Ube3a PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.875e-13
Identity = 51/181 (28.18%), Postives = 95/181 (52.49%), Query Frame = 2
Query:    2 SKEFLTDISKSAFAPEYGLFSQTSTSDRLLIPNAAARYLENGIQMFEFLGRVVGKALYEGILLDYAFSHVFVQKLLGRYSFLDELSTLDPELYRNLMYVKHYDGDVK-ELCLDFTVTE-ESFGKRHVIELKPGGGDTSVTNDNKMQYVHAMADYKLNRQIFPFSNAFYRGLTDLISPSCVK 538
            SKEF   + +  F P+ G+F+    + +L   N ++   E     F  +G ++G A+Y   +LD  F  V  +KL+G+     +L    P LY++L  +  Y+G V+ ++ + F +++ + FG   + +LK  G    +TN+N+ ++V + +DY LN+ +     AF RG   + + S +K
Sbjct:  582 SKEFFQLVVEEIFNPDIGMFTYDEAT-KLFWFNPSSFETEG---QFTLIG-ILGLAIYNNCILDVHFPMVVYRKLMGKKGTFRDLGDSHPVLYQSLKDLLEYEGSVEDDMMITFQISQTDLFGNPMMYDLKENGDKIPITNENRKEFVISYSDYILNKSVEKQFKAFRRGFHMVTNESPLK 757          
BLAST of EY688622 vs. ExPASy Swiss-Prot
Match: UPL5_ARATH (E3 ubiquitin-protein ligase UPL5 OS=Arabidopsis thaliana GN=UPL5 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.456e-13
Identity = 51/179 (28.49%), Postives = 82/179 (45.81%), Query Frame = 2
Query:    5 KEFLTDISKSAFAPEYGLFSQTSTSDRLLIPNAAARYLENGIQMFEFLGRVVGKALYEGILLDYAFSHVFVQKLLGRYSFLDELSTLDPELYRNLMYVKHYDGDVKE----LCLDFTVTEESFGKRHVIELKPGGGDTSVTNDNKMQYVHAMADYKLNRQIFPFSNAFYRGLTDLISPS 529
            +E+   + +  F P+  LF +++   R   PN A++        FEF GRV+  AL   + +   F  VF  +L G    L+++   D  +Y +   +   D +  +    L L F +  E  GKR  IEL P G   +V + N+ QYV  + + +    I      F RG TD++S S
Sbjct:  556 REWFYLVCQEIFNPKNTLFLRSADDFRRFSPNPASKVDPLHPDFFEFTGRVIALALMHKVQVGVLFDRVFFLQLAGLKISLEDIKDTDRIMYNSCKQILEMDPEFFDSNAGLGLTFVLETEELGKRDTIELCPDGKLKAVNSKNRKQYVDLLIERRFATPILEQVKQFSRGFTDMLSHS 734          
BLAST of EY688622 vs. ExPASy Swiss-Prot
Match: HECD2_PONAB (Probable E3 ubiquitin-protein ligase HECTD2 OS=Pongo abelii GN=HECTD2 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.216e-12
Identity = 56/207 (27.05%), Postives = 91/207 (43.96%), Query Frame = 2
Query:    2 SKEFLTDISKSAFAPEYGLFSQTSTSDRLLIPNAAARYLENGIQMFEFLGRVVGKALYEGILLDYAFSHVFVQKLLGRYSF--------------LDELSTLDPELYRNLMYVKHYDGDVKE-LCLDFTVTEESFGKRHVIELKPGGGDTSVTNDNKMQYVHAMADYKLNRQIFPFSNAFYRGLTDLISPSCVK*FNASEFHQFLSG 577
            +KE+   + +  F P+YG+F+    S      +  + +  +    F  +G ++G A+Y  I LD  F     +KLL                   +D+L  + PEL   L  +  ++G+V+E     F V +E FG      LKPGG   SVTN N+ +YV    D+ LN+ I+    AFY G   + + + +      E    + G
Sbjct:  461 TKEWFLLLIRQIFHPDYGMFTYHKDSHC----HWFSSFKCDNYSEFRLVGILMGLAVYNSITLDIRFPPCCYKKLLSPPIIPSDQNIPVGICSVTVDDLCQIMPELAHGLSELLSHEGNVEEDFYSTFQVFQEEFGIIKSYNLKPGGDKISVTNQNRKEYVQLYTDFLLNKSIYKQFAAFYYGFHSVCASNALMLLRPEEVEILVCG 663          
BLAST of EY688622 vs. ExPASy Swiss-Prot
Match: HECD2_MOUSE (Probable E3 ubiquitin-protein ligase HECTD2 OS=Mus musculus GN=Hectd2 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.216e-12
Identity = 58/207 (28.02%), Postives = 92/207 (44.44%), Query Frame = 2
Query:    2 SKEFLTDISKSAFAPEYGLFSQTSTSDRLLIPNAAARYLENGIQMFEFLGRVVGKALYEGILLDYAFSHVFVQKLL-------------GRYSF-LDELSTLDPELYRNLMYVKHYDGDVKE-LCLDFTVTEESFGKRHVIELKPGGGDTSVTNDNKMQYVHAMADYKLNRQIFPFSNAFYRGLTDLISPSCVK*FNASEFHQFLSG 577
            +KE+   + +  F P+YG+F+    S      +  + +  +    F  +G ++G A+Y  I LD  F     +KLL             G  S  +D+L  + PEL   L  +  Y+G+V+E     F V +E FG      LKPGG    VTN N+ +YV    D+ LN+ I+    AFY G   + + + +      E    + G
Sbjct:  459 TKEWFLLLIRQIFHPDYGMFTYHKDSHC----HWFSSFKCDNYSEFRLVGILMGLAVYNSITLDIRFPPCCYKKLLSPPVVPSDQSTPVGICSVTIDDLCQVMPELAHGLKELLSYEGNVEEDFYSTFQVFQEEFGVIKSYNLKPGGDKIPVTNQNRREYVQLYTDFLLNKSIYKQFAAFYCGFHSVCASNALMLLRPEEVEILVCG 661          
BLAST of EY688622 vs. ExPASy Swiss-Prot
Match: HECD2_HUMAN (Probable E3 ubiquitin-protein ligase HECTD2 OS=Homo sapiens GN=HECTD2 PE=2 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 1.216e-12
Identity = 56/207 (27.05%), Postives = 91/207 (43.96%), Query Frame = 2
Query:    2 SKEFLTDISKSAFAPEYGLFSQTSTSDRLLIPNAAARYLENGIQMFEFLGRVVGKALYEGILLDYAFSHVFVQKLLGRYSF--------------LDELSTLDPELYRNLMYVKHYDGDVKE-LCLDFTVTEESFGKRHVIELKPGGGDTSVTNDNKMQYVHAMADYKLNRQIFPFSNAFYRGLTDLISPSCVK*FNASEFHQFLSG 577
            +KE+   + +  F P+YG+F+    S      +  + +  +    F  +G ++G A+Y  I LD  F     +KLL                   +D+L  + PEL   L  +  ++G+V+E     F V +E FG      LKPGG   SVTN N+ +YV    D+ LN+ I+    AFY G   + + + +      E    + G
Sbjct:  461 TKEWFLLLIRQIFHPDYGMFTYHKDSHC----HWFSSFKCDNYSEFRLVGILMGLAVYNSITLDIRFPPCCYKKLLSPPIIPSDQNIPVGICNVTVDDLCQIMPELAHGLSELLSHEGNVEEDFYSTFQVFQEEFGIIKSYNLKPGGDKISVTNQNRKEYVQLYTDFLLNKSIYKQFAAFYYGFHSVCASNALMLLRPEEVEILVCG 663          
BLAST of EY688622 vs. ExPASy Swiss-Prot
Match: HUL4_ASHGO (Probable E3 ubiquitin-protein ligase HUL4 OS=Ashbya gossypii GN=HUL4 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.588e-12
Identity = 57/203 (28.08%), Postives = 91/203 (44.83%), Query Frame = 2
Query:    5 KEFLTDISKSAFAPEYGLFSQTSTSDRLL-------IPNAAARYLENGIQMFEFLGRVVGKALYEGILLDYAFSHVFVQKLLGRYSFLDELSTLDPELYRNLMYVKHYDGDVKE--LCLDF-TVTEESF--GKRHVIELKPGGGDTSVTNDNKMQYVHAMADYKLNRQIFPFSNAFYRGLTDLISPSCVK*FNASEFHQFLSG 577
            KE+   +++  F P  GLF     S RL        I +   +   +  +++   G V+G A+Y   +LD  F   F +K+ G    +++   L PE   N++ +  YDG+  E    L F T   + F   K H  +L P G   +VT +NK +Y     D+ LNR I P   +F  G   +I  +  + F + E  Q + G
Sbjct:  522 KEWFLLLTRDLFNPNNGLFVYVPES-RLCWFSIMESIEHELLQGEGSSSELYYLFGVVLGLAIYNSTILDLKFPRAFYKKICGEVLSVNDFLELYPETGTNMLKMLEYDGEDFEDIFALTFETCFPDRFDESKIHYRQLCPDGSTQAVTRENKHEYFRLWMDFYLNRSIAPGFESFRNGFFHVIEGNSFRLFGSEELEQLVCG 723          
The following BLAST results are available for this feature:
BLAST of EY688622 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
UBE3A_MOUSE1.875e-1328.18Ubiquitin-protein ligase E3A OS=Mus musculus GN=Ub... [more]
UPL5_ARATH5.456e-1328.49E3 ubiquitin-protein ligase UPL5 OS=Arabidopsis th... [more]
HECD2_PONAB1.216e-1227.05Probable E3 ubiquitin-protein ligase HECTD2 OS=Pon... [more]
HECD2_MOUSE1.216e-1228.02Probable E3 ubiquitin-protein ligase HECTD2 OS=Mus... [more]
HECD2_HUMAN1.216e-1227.05Probable E3 ubiquitin-protein ligase HECTD2 OS=Hom... [more]
HUL4_ASHGO1.588e-1228.08Probable E3 ubiquitin-protein ligase HUL4 OS=Ashby... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-090-D10-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY688622 ID=EY688622; Name=EY688622; organism=Citrus sinensis; type=EST; length=837bp
ATCAAAAGAGTTTTTGACTGATATATCAAAATCAGCTTTTGCTCCTGAGT
ATGGGCTATTTTCCCAAACCTCAACTTCAGACAGGCTCCTGATCCCTAAT
GCTGCCGCAAGATATCTAGAGAACGGTATCCAGATGTTTGAGTTCCTTGG
GAGAGTTGTTGGTAAAGCACTTTATGAAGGGATATTACTTGATTATGCCT
TTTCACATGTTTTTGTGCAAAAGTTGTTAGGCCGATATAGCTTCCTTGAT
GAGCTGTCAACACTTGATCCAGAGCTCTACCGGAATCTAATGTATGTCAA
GCATTATGATGGTGACGTCAAAGAACTGTGTCTGGATTTCACTGTCACAG
AAGAGTCATTTGGTAAACGACATGTTATTGAGCTAAAACCTGGTGGTGGG
GATACTAGTGTGACAAATGACAACAAGATGCAATATGTTCATGCTATGGC
TGATTATAAACTCAACCGGCAGATTTTTCCCTTCTCAAATGCATTTTACA
GAGGGTTAACTGATCTCATATCACCGTCTTGCGTGAAGTGATTTAATGCC
AGCGAATTCCATCAGTTCCTTTCGGGACGAACACATGACCGTAGATGGGT
ATCATTTGGGAGACGATACACGCGCAGACCGCGGCGATGACACACCGGAC
ACGGGACGCACACACATCACCCAGGACGCGAGAGAAGAGAAAACAACGAA
AAAAGAAAGAGAAAAGAAGCAACCAGGGACAACACAACAGACAGAACGCC
ACACCAACGCACCACCAAAAAGAGCAGCACCAGCCGACGCCCGCATCCCC
AAGAATCCCGCCAACAAGCCAACAAAGAGAGACATGA
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