EY688509

Overview
NameEY688509
Unique NameEY688509
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length867
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9007 contig Csv1_Contig9007:1..869. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY688509 vs. ExPASy Swiss-Prot
Match: CALSC_ARATH (Callose synthase 12 OS=Arabidopsis thaliana GN=CALS12 PE=1 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 5.317e-43
Identity = 87/222 (39.19%), Postives = 133/222 (59.91%), Query Frame = 3
Query:   18 DWNKWISNRGGIGVPPXXXXXXXXXXXXXHLQHSGKRGIIAEIVLALRFFIYQYGLVYHLKMTKHTKSFLVYGVSWLVIFLVLFVMKTVSVGRRKFSANFQLVFRLIKGLIFLTFISILVTLIALPHMTVRDIIVCILAFMPTGWGMLLIAQALKPVI-HRAGFWGSVRTLARGYEIVMGLLLFTPVAFLAWFPFVSEFQTPMLFNQAFSRGLQISRILGGQ 680
            D+  WI  +G I                 HL+++GK G+  EI+L LRFF +QYG+VY LK+   + S  VY  SW+ IF +  +   +   R K+SA   + +RL++ L+ +  I ++V L+   H +  DI   +LAF+PTGWG+LLIAQ  +  + +   FW +V ++AR Y+I+ G+L+  PVAFL+W P     QT +LFN+AFSRGL+I +I+ G+
Sbjct: 1553 DFMNWIWYQGRISTKSEQSWEKWWYEEQDHLRNTGKAGLFVEIILVLRFFFFQYGIVYQLKIANGSTSLFVYLFSWIYIFAIFVLFLVIQYARDKYSAKAHIRYRLVQFLLIVLAILVIVALLEFTHFSFIDIFTSLLAFIPTGWGILLIAQTQRKWLKNYTIFWNAVVSVARMYDILFGILIMVPVAFLSWMPGFQSMQTRILFNEAFSRGLRIMQIVTGK 1774          
BLAST of EY688509 vs. ExPASy Swiss-Prot
Match: CALSB_ARATH (Callose synthase 11 OS=Arabidopsis thaliana GN=CALS11 PE=2 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 8.488e-41
Identity = 82/221 (37.10%), Postives = 133/221 (60.18%), Query Frame = 3
Query:   18 DWNKWISNRGGIGVPPXXXXXXXXXXXXXHLQHSGKRGIIAEIVLALRFFIYQYGLVYHLKMTKHTKSFLVYGVSWLVIFLVLFVMKTVSVGRRKFSANFQLVFRLIKGLIFLTFISILVTLIALPHMTVRDIIVCILAFMPTGWGMLLIAQALKPVIHRAGFWGSVRTLARGYEIVMGLLLFTPVAFLAWFPFVSEFQTPMLFNQAFSRGLQISRILGGQ 680
            D+  W+ +RGG+                 HL+ +G  G + EI+L LRFF +QY +VYHL++ ++  S  VY +SW  I  ++ +  T    ++++S    + +R I+ L+ L  + ++V ++    +TV D+++ +LAF+PTGWG++ IAQ LKP +     W +V ++AR Y++  GL++  PVA L+W P     QT +LFN+AFSRGLQIS IL G+
Sbjct: 1545 DFIAWLWSRGGLFTKADQSWFTWWNEEQEHLKTTGVWGKLLEIILDLRFFFFQYSIVYHLRIAENRTSIGVYLISWGCIIGIVAIYITTIYAQKRYSVKEHIKYRFIQFLVILLTVLVVVMMLQFTKLTVVDLLISLLAFVPTGWGLISIAQVLKPFLLSTVVWDTVISVARFYDLFFGLIVMAPVALLSWLPGFQNMQTRILFNEAFSRGLQISIILAGK 1765          
The following BLAST results are available for this feature:
BLAST of EY688509 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
CALSC_ARATH5.317e-4339.19Callose synthase 12 OS=Arabidopsis thaliana GN=CAL... [more]
CALSB_ARATH8.488e-4137.10Callose synthase 11 OS=Arabidopsis thaliana GN=CAL... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C2-003-072-G05-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY688509 ID=EY688509; Name=EY688509; organism=Citrus sinensis; type=EST; length=867bp
CCACGCGTCCGTGGACTGATTGGAATAAGTGGATAAGTAACCGAGGAGGC
ATAGGTGTACCACCTGAGAAAAGTTGGGAATCATGGTGGGAGGAAGAACA
GGAGCATCTCCAGCACTCTGGAAAGCGTGGTATCATAGCTGAGATAGTGT
TAGCTTTAAGGTTCTTTATCTATCAGTATGGACTCGTGTACCATTTGAAA
ATGACAAAGCACACTAAAAGTTTTCTGGTCTACGGTGTATCATGGCTGGT
GATCTTTCTTGTATTGTTTGTGATGAAGACTGTATCTGTTGGGCGGCGAA
AGTTCAGTGCAAATTTCCAACTCGTGTTCCGACTGATAAAGGGATTGATA
TTTTTGACTTTCATCTCCATCCTGGTCACTTTGATTGCACTTCCACACAT
GACAGTGCGCGACATCATTGTGTGTATTCTCGCATTCATGCCCACTGGTT
GGGGAATGCTTTTGATTGCACAAGCTTTGAAGCCTGTTATTCACCGAGCT
GGATTCTGGGGATCAGTTAGGACACTTGCTCGTGGCTACGAGATTGTTAT
GGGTTTGCTTCTGTTCACCCCAGTTGCGTTCCTTGCTTGGTTTCCTTTTG
TGTCAGAATTCCAGACTCCTATGCTCTTCAACCAAGCATTCAGCAGAGGT
CTACAGATCTCTCGTATTCTTGGCGGGCAGCCGGAAGGATCGTTCCTCTC
GTAACAAGGAGTAAAATGAGTGATAGCGAGAACAGAATCTGTGGTATTTT
GTTAATCACTCTCCCCATGTTTAAAAAAAGTTGCCCATAATTTATATTTT
GATCCTCCTGCCGGTGGTTGGAATCATGGATGGACGCCTGGGGGCCTGCT
TTTTTGGTAATTAATTT
back to top