EY688442

Overview
NameEY688442
Unique NameEY688442
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length845
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY688442 vs. ExPASy Swiss-Prot
Match: RBS2_ACECL (Ribulose bisphosphate carboxylase small chain 2 (Fragment) OS=Acetabularia cliftonii GN=RBCS-2 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.081e-12
Identity = 32/65 (49.23%), Postives = 43/65 (66.15%), Query Frame = 3
Query:  369 SPGYYDGRYWTMWKLPMYGCTDATQVLNEVGEVQKEYPHSFVRIIRFDNERQGNASISLLPSHQP 563
            S  Y D RYWTMWKLPM+GCTD +QVL+E+    K +P +++R++ FD  RQ    IS    H+P
Sbjct:   10 SSTYQDNRYWTMWKLPMFGCTDGSQVLSEIQACTKAFPDAYIRLVCFDANRQ--VQISGFLVHRP 72          
BLAST of EY688442 vs. ExPASy Swiss-Prot
Match: RBS_RHOCA (Ribulose bisphosphate carboxylase small chain OS=Rhodobacter capsulatus GN=cbbS PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.037e-11
Identity = 33/104 (31.73%), Postives = 54/104 (51.92%), Query Frame = 3
Query:  225 KKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLNEVGEVQKEYPHSFVRIIRFDNERQGNAS 536
            +K  T SYLPP+ +  + +++ +++++GW P +E            H  P +    YW MWKLPM+G TD   +L E+    +  P   VR+I +DN  Q   +
Sbjct:   17 RKMGTFSYLPPMGEAEIRRQVEWIVKNGWNPGIE------------HTEPDFAAQIYWYMWKLPMFGETDVDAILAELKACHEANPGHHVRLIGYDNFTQSQGA 108          
BLAST of EY688442 vs. ExPASy Swiss-Prot
Match: RBS_NITVU (Ribulose bisphosphate carboxylase small chain OS=Nitrobacter vulgaris GN=cbbS PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.355e-11
Identity = 38/109 (34.86%), Postives = 55/109 (50.46%), Query Frame = 3
Query:  198 MKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLNEVGEVQKEYPHSFVRIIRFDNERQ 524
            M V     LKK+ET SYLP ++ E + ++I + I  GW P +E   EKG   +            YW MWKLP++G      V+ E+    +E+P   VR + +DN  Q
Sbjct:    1 MAVQAYRSLKKYETFSYLPQMTPEQVRRQIAHAIAQGWNPAVE-HTEKGTPAK----------ASYWYMWKLPLFGEQSVDAVVAEIEACHREFPDQMVRFVAYDNYAQ 98          
BLAST of EY688442 vs. ExPASy Swiss-Prot
Match: RBS1_THIFE (Ribulose bisphosphate carboxylase small chain 1 OS=Thiobacillus ferrooxidans GN=cbbS1 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.769e-11
Identity = 36/103 (34.95%), Postives = 50/103 (48.54%), Query Frame = 3
Query:  228 KFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLNEVGEVQKEYPHSFVRIIRFDNERQGNAS 536
            K+ET SYLP +  E + ++I YLI  GW P +E            H  P      YW MWKLPM+G      V+ E+    + +P   VR++ +DN  Q   S
Sbjct:   12 KYETFSYLPAMGPEKMRRQIAYLINQGWNPGIE------------HVEPERASTYYWYMWKLPMFGEQSVDTVIMELEACHRAHPGHHVRLVGYDNYSQSQGS 102          
The following BLAST results are available for this feature:
BLAST of EY688442 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 124
Match NameE-valueIdentityDescription
RBS2_ACECL6.081e-1249.23Ribulose bisphosphate carboxylase small chain 2 (F... [more]
RBS_RHOCA1.037e-1131.73Ribulose bisphosphate carboxylase small chain OS=R... [more]
RBS_NITVU1.355e-1134.86Ribulose bisphosphate carboxylase small chain OS=N... [more]
RBS1_THIFE1.769e-1134.95Ribulose bisphosphate carboxylase small chain 1 OS... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-070-G12-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY688442 ID=EY688442; Name=EY688442; organism=Citrus sinensis; type=EST; length=845bp
CCCGCGTCCGGCAAGTACCAATGGCTTCCTCCTTTATCTCATCGGCCACC
GTTGCCACCGCGAACCGCGCCACCCTTGCTCAGGCCCGCCCGGTCGCCCC
CTTCACCGGCCTCAAGTCTTCTTCTGCTTTCCCAGCAACCAAGAAGACCA
ACAATGACATTACTTCCATTGCAAGCAACGGCGGAAGAGTCCAATGCATG
AAGGTGTGGCCACCAACTGGCTTGAAGAAGTTCGAGACTCTCTCATACCT
CCCGCCACTGTCCGATGAAGCTTTGCTCAAGGAAATCAATTACCTTATCC
GCTCCGGCTGGATTCCCTGCTTGGAATTCGAGTTGGAGAAAGGATGGGTG
TACCGTGAGCACCACAAGTCACCAGGATACTACGATGGACGCTACTGGAC
AATGTGGAAGCTGCCCATGTATGGGTGCACAGATGCAACCCAGGTTTTGA
ACGAGGTTGGGGAGGTCCAAAAGGAATACCCACATTCATTCGTCCGAATT
ATCCGATTTGACAACGAGCGTCAAGGCAACGCATCAATTTCCTTGCTGCC
AAGCCACCAGCCCGTCTAGGCCCCCCAATTAAATTTGGGTAACCCACCCT
CGCATATTGGTGATAATCATAATGGCGAAACCCCCAAAAGAGAATCTCAA
TAGAGGGCCGGCGAGCGCGTGGAGACACCCCACCCCAGGCGACGCGCGCC
CCCGCCCCCACCGGCCGGGGCAACCAGGGACAACGCCCCGAGCACAACAC
GACAACACCGCGCCACAACACAGGAGGGGAGAGCGAGAAGACACGCCAAC
CGACGGAACAGGAGGACAAACCTAACTGGAACAGCCAAAGACCGA
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