EY688442

Overview
NameEY688442
Unique NameEY688442
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length845
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY688442 vs. ExPASy Swiss-Prot
Match: RBS_AEGTA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Aegilops tauschii GN=RBCS PE=2 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 2.698e-52
Identity = 96/162 (59.26%), Postives = 122/162 (75.31%), Query Frame = 3
Query:   78 AQARPVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLNEVGEVQKEYPHSFVRIIRFDNERQGNASISLLPSHQP 563
            + A  VAPF GLKS++  P ++++N       SNGGR++CM+VWP  G+KKFETLSYLPPLS E LLK+++YLIRS W+PCLEF  + G+++REH+ SPGYYDGRYWTMWKLPM+GC   TQV+ EV EV+KEYP  + RII FDN RQ   S+S + S  P
Sbjct:    8 SSATSVAPFQGLKSTAGLPVSRRSNGASLGSVSNGGRIRCMQVWPIEGIKKFETLSYLPPLSTEGLLKQVDYLIRSKWVPCLEFR-KVGFIFREHNVSPGYYDGRYWTMWKLPMFGCPAPTQVIPEVEEVRKEYPDPYCRIIGFDNMRQVQ-SVSFIASKPP 167          
BLAST of EY688442 vs. ExPASy Swiss-Prot
Match: RBS_PINTH (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Pinus thunbergii GN=RBCS PE=2 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 4.763e-49
Identity = 94/164 (57.32%), Postives = 122/164 (74.39%), Query Frame = 3
Query:   45 ATVATANRATLAQARPVAPFTGLKSSSAFPATKKTNNDITS----IASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLNEVGEVQKEYPHSFVRIIRFDNERQ 524
            AT A A  AT+  A     FTGLKS++ FP++ K +N          SNGGRV+CM+VWPP G  KFETLSYLP L++E L+KE+ YL+R+ W+PCLEF+LE G + R++++SPGYYDGRYW MWKLPM+GCT+A+QV+NEV E  K YP +F+R+I FDN RQ
Sbjct:    2 ATGAGAGAATVVSA-----FTGLKSTAQFPSSFKMSNAAAEWEQKTTSNGGRVRCMQVWPPFGNPKFETLSYLPTLTEEQLVKEVEYLLRNKWVPCLEFDLE-GSISRKYNRSPGYYDGRYWVMWKLPMFGCTEASQVINEVRECAKAYPKAFIRVIGFDNVRQ 159          
BLAST of EY688442 vs. ExPASy Swiss-Prot
Match: RBS_MAIZE (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Zea mays GN=RBCS PE=1 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 2.364e-48
Identity = 88/149 (59.06%), Postives = 116/149 (77.85%), Query Frame = 3
Query:   78 AQARPVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLNEVGEVQKEYPHSFVRIIRFDNERQ 524
            + A  VAPF GLKS+++ P  ++++  + ++ SNGGR++CM+VWP  G KKFETLSYLPPLS + LLK+++YL+R+GWIPCLEF  + G+VYRE+  SP YYDGRYWTMWKLPM+GC DATQV  E+ E  K YP +F R+I FDN +Q
Sbjct:    9 SSATAVAPFQGLKSTASLPVARRSSRSLGNV-SNGGRIRCMQVWPAYGNKKFETLSYLPPLSTDDLLKQVDYLLRNGWIPCLEFS-KVGFVYRENSTSPCYYDGRYWTMWKLPMFGCNDATQVYKELQEAIKSYPDAFHRVIGFDNIKQ 155          
BLAST of EY688442 vs. ExPASy Swiss-Prot
Match: RBS_LARLA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Larix laricina GN=RBCS PE=3 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 2.001e-47
Identity = 94/176 (53.41%), Postives = 122/176 (69.32%), Query Frame = 3
Query:   21 MASSFIS----SATVATANRATLAQARPVAPFTGLKSSSAFPATKKTNNDITS----IASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLNEVGEVQKEYPHSFVRIIRFDNERQ 524
            MASS ++    +A  A A  +    +  V+ FTGLKS + FP++K  +N          SNG RV+CM+VWPP   KKFETLSYLP L+ E L+KE+ YL+++ W+PCLEFE E G + R +  SPGYYDGRYW MWKLPM+GCT+A+QVLNEV E  K YP++F+R+I FDN RQ
Sbjct:    1 MASSIMALSSTAAVAAVAAPSKTGNSNVVSAFTGLKSMAQFPSSKTMSNAGAEWEQKTTSNGSRVRCMQVWPPYANKKFETLSYLPRLTPEQLVKEVEYLLKNKWVPCLEFE-EDGEIKRVYGNSPGYYDGRYWVMWKLPMFGCTEASQVLNEVNECAKAYPNAFIRVIGFDNVRQ 175          
BLAST of EY688442 vs. ExPASy Swiss-Prot
Match: RBS1_PEA (Ribulose bisphosphate carboxylase small chain, chloroplastic (Fragment) OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 5.822e-47
Identity = 84/121 (69.42%), Postives = 98/121 (80.99%), Query Frame = 3
Query:  162 TSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLNEVGEVQKEYPHSFVRIIRFDNERQ 524
            T I SNG RV+CM+VWPP G KKFETLSYLPPL+ + LLKE+ YL+R GW+PCLEFEL KG+VY EH+KSP YYDGRYWTMWKLPM+G TD  QV+ EV EV   YP +FVR+I F+N RQ
Sbjct:    2 TDITSNGERVKCMQVWPPIGKKKFETLSYLPPLTRDQLLKEVEYLLRKGWVPCLEFELLKGFVYGEHNKSPRYYDGRYWTMWKLPMFGTTDPAQVVKEVDEVVAAYPEAFVRVIGFNNVRQ 122          
BLAST of EY688442 vs. ExPASy Swiss-Prot
Match: RBS_SACHY (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Saccharum hybrid GN=RBCS PE=3 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 1.214e-44
Identity = 84/149 (56.38%), Postives = 109/149 (73.15%), Query Frame = 3
Query:   78 AQARPVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLNEVGEVQKEYPHSFVRIIRFDNERQ 524
            + A   APF GLKS+++ P  +++   +  + SNGGR++CM+VWP  G KKFETLSYLPPL+ E LLK+++YL+R+ W+PCLEF  E G+VYRE+  SP YYDGRYWTMWKLPM+GCTDA+QV  E+ E    YP     I+ FDN RQ
Sbjct:    8 SSATAAAPFQGLKSTASLPVARRSTTSLAKV-SNGGRIRCMQVWPAYGNKKFETLSYLPPLTQEQLLKQVDYLLRNNWVPCLEFSKE-GFVYRENSTSPCYYDGRYWTMWKLPMFGCTDASQVYKELQEAIASYP-ELRAILGFDNIRQ 153          
BLAST of EY688442 vs. ExPASy Swiss-Prot
Match: RBS1_SPIOL (Ribulose bisphosphate carboxylase small chain OS=Spinacia oleracea GN=RBCS PE=1 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 3.655e-41
Identity = 76/109 (69.72%), Postives = 91/109 (83.49%), Query Frame = 3
Query:  198 MKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLNEVGEVQKEYPHSFVRIIRFDNERQ 524
            M+VWPP GLKKFETLSYLPPL+ E LL E+NYL+  GWIP LEFE++ G+VYREH KSPGYYDGRYWTMWKLPM+G TD  QV+NEV EV+K  P +FVR I F+++R+
Sbjct:    1 MQVWPPLGLKKFETLSYLPPLTTEQLLAEVNYLLVKGWIPPLEFEVKDGFVYREHDKSPGYYDGRYWTMWKLPMFGGTDPAQVVNEVEEVKKAPPDAFVRFIGFNDKRE 109          
BLAST of EY688442 vs. ExPASy Swiss-Prot
Match: RBS_MARPA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Marchantia paleacea GN=RBCS PE=2 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 4.940e-38
Identity = 81/180 (45.00%), Postives = 111/180 (61.67%), Query Frame = 3
Query:   27 SSFISSATVATANRATLAQARPVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLNEVGEVQKEY-PHSFVRIIRFDNERQGNASISLLPSHQP 563
            +S ++SA V T   A+ A     +    +++          +   T   +NG RV CM+VW P    KFETLSYLPPLS +AL K+I+Y+I+SGW PC+EF+++ G V RE    PGYYDGRYWTMWKLPM+GCTD+  VL E+ E +K Y    ++R + FDN RQ   +  ++  HQP
Sbjct:    2 ASVVASAAVVTPFAASAASTTKSSQIVSVQAGLKAGVFGGKSEWQTKTQTNGSRVSCMQVWEPYNNLKFETLSYLPPLSQDALAKQIDYVIKSGWAPCIEFDVQ-GTVTREGSTMPGYYDGRYWTMWKLPMFGCTDSASVLREIEECKKLYGKKCYIRCLGFDNTRQVQCASFIV--HQP 178          
BLAST of EY688442 vs. ExPASy Swiss-Prot
Match: RBS3_WHEAT (Ribulose bisphosphate carboxylase small chain clone 512 (Fragment) OS=Triticum aestivum PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.877e-37
Identity = 69/94 (73.40%), Postives = 84/94 (89.36%), Query Frame = 3
Query:  243 SYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLNEVGEVQKEYPHSFVRIIRFDNERQ 524
            +YLPPLS EALLK+++YLIRS W+PCLEF  + G+++REH+ SPGYYDGRYWTMWKLPM+GCTDATQV+NEV EV+KEYP ++VRII FDN RQ
Sbjct:    1 AYLPPLSTEALLKQVDYLIRSKWVPCLEFS-KVGFIFREHNASPGYYDGRYWTMWKLPMFGCTDATQVINEVEEVKKEYPDAYVRIIGFDNMRQ 93          
BLAST of EY688442 vs. ExPASy Swiss-Prot
Match: RBS2_CHLRE (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Chlamydomonas reinhardtii GN=RBCS-2 PE=1 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 3.791e-30
Identity = 69/174 (39.66%), Postives = 94/174 (54.02%), Query Frame = 3
Query:   21 MASSFISSATVATANRATLAQARPVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEF-ELEKGWVYREHHKSPG-----YYDGRYWTMWKLPMYGCTDATQVLNEVGEVQKEYPHSFVRIIRFDNERQ 524
            MA+    S+  A   R   +  RP+A       ++   A  + N               M VW P   K FET SYLPPLSDE +  +++Y++ +GWIPCLEF E +K +V  E     G     YYD RYWTMWKLPM+GC D  QVL E+    K +P ++VR++ FDN++Q
Sbjct:    1 MAAVIAKSSVSAAVARPARSSVRPMAALKPAVKAAPVAAPAQANQ--------------MMVWTPVNNKMFETFSYLPPLSDEQIAAQVDYIVANGWIPCLEFAESDKAYVSNESAIRFGSVSCLYYDNRYWTMWKLPMFGCRDPMQVLREIVACTKAFPDAYVRLVAFDNQKQ 160          
The following BLAST results are available for this feature:
BLAST of EY688442 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 124
Match NameE-valueIdentityDescription
RBS_AEGTA2.698e-5259.26Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_PINTH4.763e-4957.32Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_MAIZE2.364e-4859.06Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_LARLA2.001e-4753.41Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS1_PEA5.822e-4769.42Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_SACHY1.214e-4456.38Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS1_SPIOL3.655e-4169.72Ribulose bisphosphate carboxylase small chain OS=S... [more]
RBS_MARPA4.940e-3845.00Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS3_WHEAT1.877e-3773.40Ribulose bisphosphate carboxylase small chain clon... [more]
RBS2_CHLRE3.791e-3039.66Ribulose bisphosphate carboxylase small chain 2, c... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-070-G12-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY688442 ID=EY688442; Name=EY688442; organism=Citrus sinensis; type=EST; length=845bp
CCCGCGTCCGGCAAGTACCAATGGCTTCCTCCTTTATCTCATCGGCCACC
GTTGCCACCGCGAACCGCGCCACCCTTGCTCAGGCCCGCCCGGTCGCCCC
CTTCACCGGCCTCAAGTCTTCTTCTGCTTTCCCAGCAACCAAGAAGACCA
ACAATGACATTACTTCCATTGCAAGCAACGGCGGAAGAGTCCAATGCATG
AAGGTGTGGCCACCAACTGGCTTGAAGAAGTTCGAGACTCTCTCATACCT
CCCGCCACTGTCCGATGAAGCTTTGCTCAAGGAAATCAATTACCTTATCC
GCTCCGGCTGGATTCCCTGCTTGGAATTCGAGTTGGAGAAAGGATGGGTG
TACCGTGAGCACCACAAGTCACCAGGATACTACGATGGACGCTACTGGAC
AATGTGGAAGCTGCCCATGTATGGGTGCACAGATGCAACCCAGGTTTTGA
ACGAGGTTGGGGAGGTCCAAAAGGAATACCCACATTCATTCGTCCGAATT
ATCCGATTTGACAACGAGCGTCAAGGCAACGCATCAATTTCCTTGCTGCC
AAGCCACCAGCCCGTCTAGGCCCCCCAATTAAATTTGGGTAACCCACCCT
CGCATATTGGTGATAATCATAATGGCGAAACCCCCAAAAGAGAATCTCAA
TAGAGGGCCGGCGAGCGCGTGGAGACACCCCACCCCAGGCGACGCGCGCC
CCCGCCCCCACCGGCCGGGGCAACCAGGGACAACGCCCCGAGCACAACAC
GACAACACCGCGCCACAACACAGGAGGGGAGAGCGAGAAGACACGCCAAC
CGACGGAACAGGAGGACAAACCTAACTGGAACAGCCAAAGACCGA
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