EY688442

Overview
NameEY688442
Unique NameEY688442
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length845
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY688442 vs. ExPASy Swiss-Prot
Match: RBS1_CHLRE (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Chlamydomonas reinhardtii GN=RBCS-1 PE=1 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 6.467e-30
Identity = 68/174 (39.08%), Postives = 94/174 (54.02%), Query Frame = 3
Query:   21 MASSFISSATVATANRATLAQARPVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEF-ELEKGWVYREHHKSPG-----YYDGRYWTMWKLPMYGCTDATQVLNEVGEVQKEYPHSFVRIIRFDNERQ 524
            MA+    S+  A   R   +  RP+A       ++   A  + N               M VW P   K FET SYLPPL+DE +  +++Y++ +GWIPCLEF E +K +V  E     G     YYD RYWTMWKLPM+GC D  QVL E+    K +P ++VR++ FDN++Q
Sbjct:    1 MAAVIAKSSVSAAVARPARSSVRPMAALKPAVKAAPVAAPAQANQ--------------MMVWTPVNNKMFETFSYLPPLTDEQIAAQVDYIVANGWIPCLEFAEADKAYVSNESAIRFGSVSCLYYDNRYWTMWKLPMFGCRDPMQVLREIVACTKAFPDAYVRLVAFDNQKQ 160          
BLAST of EY688442 vs. ExPASy Swiss-Prot
Match: RBS_EUGGR (Ribulose bisphosphate carboxylase small chains, chloroplastic OS=Euglena gracilis GN=RBCS1 PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.717e-28
Identity = 58/115 (50.43%), Postives = 77/115 (66.96%), Query Frame = 3
Query:  198 MKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFEL-EKGWVYREHH-----KSPGYYDGRYWTMWKLPMYGCTDATQVLNEVGEVQKEYPHSFVRIIRFDNERQ 524
            MKVW P   KKFET SYLPPLSD  + K+++ +I  G  PCLEF   E  ++  ++       + GYYD RYWTMWKLPM+GCTDA+QVL E+ E ++ YP  +VR+  FD+ +Q
Sbjct:  135 MKVWNPVNNKKFETFSYLPPLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRFSGTAAGYYDNRYWTMWKLPMFGCTDASQVLREISECRRAYPQCYVRLAAFDSVKQ 249          

HSP 2 Score: 125.946 bits (315), Expect = 2.717e-28
Identity = 58/115 (50.43%), Postives = 77/115 (66.96%), Query Frame = 3
Query:  198 MKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFEL-EKGWVYREHH-----KSPGYYDGRYWTMWKLPMYGCTDATQVLNEVGEVQKEYPHSFVRIIRFDNERQ 524
            MKVW P   KKFET SYLPPLSD  + K+++ +I  G  PCLEF   E  ++  ++       + GYYD RYWTMWKLPM+GCTDA+QVL E+ E ++ YP  +VR+  FD+ +Q
Sbjct:  279 MKVWNPVNNKKFETFSYLPPLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRFSGTAAGYYDNRYWTMWKLPMFGCTDASQVLREISECRRAYPQCYVRLAAFDSVKQ 393          

HSP 3 Score: 125.946 bits (315), Expect = 2.717e-28
Identity = 58/115 (50.43%), Postives = 77/115 (66.96%), Query Frame = 3
Query:  198 MKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFEL-EKGWVYREHH-----KSPGYYDGRYWTMWKLPMYGCTDATQVLNEVGEVQKEYPHSFVRIIRFDNERQ 524
            MKVW P   KKFET SYLPPLSD  + K+++ +I  G  PCLEF   E  ++  ++       + GYYD RYWTMWKLPM+GCTDA+QVL E+ E ++ YP  +VR+  FD+ +Q
Sbjct:  566 MKVWNPVNNKKFETFSYLPPLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRFSGTAAGYYDNRYWTMWKLPMFGCTDASQVLREISECRRAYPQCYVRLAAFDSVKQ 680          

HSP 4 Score: 125.946 bits (315), Expect = 2.717e-28
Identity = 58/115 (50.43%), Postives = 77/115 (66.96%), Query Frame = 3
Query:  198 MKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFEL-EKGWVYREHH-----KSPGYYDGRYWTMWKLPMYGCTDATQVLNEVGEVQKEYPHSFVRIIRFDNERQ 524
            MKVW P   KKFET SYLPPLSD  + K+++ +I  G  PCLEF   E  ++  ++       + GYYD RYWTMWKLPM+GCTDA+QVL E+ E ++ YP  +VR+  FD+ +Q
Sbjct:  709 MKVWNPVNNKKFETFSYLPPLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRFSGTAAGYYDNRYWTMWKLPMFGCTDASQVLREISECRRAYPQCYVRLAAFDSVKQ 823          

HSP 5 Score: 125.946 bits (315), Expect = 2.717e-28
Identity = 58/115 (50.43%), Postives = 77/115 (66.96%), Query Frame = 3
Query:  198 MKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFEL-EKGWVYREHH-----KSPGYYDGRYWTMWKLPMYGCTDATQVLNEVGEVQKEYPHSFVRIIRFDNERQ 524
            MKVW P   KKFET SYLPPLSD  + K+++ +I  G  PCLEF   E  ++  ++       + GYYD RYWTMWKLPM+GCTDA+QVL E+ E ++ YP  +VR+  FD+ +Q
Sbjct:  997 MKVWNPVNNKKFETFSYLPPLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRFSGTAAGYYDNRYWTMWKLPMFGCTDASQVLREISECRRAYPQCYVRLAAFDSVKQ 1111          

HSP 6 Score: 125.946 bits (315), Expect = 2.717e-28
Identity = 58/115 (50.43%), Postives = 77/115 (66.96%), Query Frame = 3
Query:  198 MKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFEL-EKGWVYREHH-----KSPGYYDGRYWTMWKLPMYGCTDATQVLNEVGEVQKEYPHSFVRIIRFDNERQ 524
            MKVW P   KKFET SYLPPLSD  + K+++ +I  G  PCLEF   E  ++  ++       + GYYD RYWTMWKLPM+GCTDA+QVL E+ E ++ YP  +VR+  FD+ +Q
Sbjct: 1141 MKVWNPVNNKKFETFSYLPPLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRFSGTAAGYYDNRYWTMWKLPMFGCTDASQVLREISECRRAYPQCYVRLAAFDSVKQ 1255          

HSP 7 Score: 124.02 bits (310), Expect = 1.032e-27
Identity = 57/115 (49.57%), Postives = 76/115 (66.09%), Query Frame = 3
Query:  198 MKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFEL-EKGWVYREHH-----KSPGYYDGRYWTMWKLPMYGCTDATQVLNEVGEVQKEYPHSFVRIIRFDNERQ 524
            MKVW P   KKFET SYLPPLSD  + K+++ +I  G  PCLEF   E  ++  ++       + GYYD  YWTMWKLPM+GCTDA+QVL E+ E ++ YP  +VR+  FD+ +Q
Sbjct:  422 MKVWNPVNNKKFETFSYLPPLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRFSGTAAGYYDNHYWTMWKLPMFGCTDASQVLREISECRRAYPQCYVRLAAFDSVKQ 536          

HSP 8 Score: 121.709 bits (304), Expect = 5.124e-27
Identity = 58/115 (50.43%), Postives = 77/115 (66.96%), Query Frame = 3
Query:  198 MKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFEL-EKGWVYREHH-----KSPGYYDGRYWTMWKLPMYGCTDATQVLNEVGEVQKEYPHSFVRIIRFDNERQ 524
            MKVW P   KKFET SYLPPLSD  + K+++ +I  G  PCLEF   E  ++  ++       + GYYD RYWTMWKLPM+GCTDA+QVL E+ E ++ YP  +VR + FD+ +Q
Sbjct:  854 MKVWNPVNNKKFETFSYLPPLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRFSGTAAGYYDNRYWTMWKLPMFGCTDASQVLREISECRRAYPQCYVR-LAFDSVKQ 967          
BLAST of EY688442 vs. ExPASy Swiss-Prot
Match: RBS_CHLMO (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Chlamydomonas moewusii GN=RBCS PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 4.634e-28
Identity = 54/114 (47.37%), Postives = 76/114 (66.67%), Query Frame = 3
Query:  201 KVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFE------LEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLNEVGEVQKEYPHSFVRIIRFDNERQ 524
            KVW P   K++ET SYLPPL+++ + ++++Y+I +GW PCLEF       +      R    S GYYD RYWTMWKLPM+GCTD +QVL EV   Q  +P+ ++R++ FDN +Q
Sbjct:   30 KVWQPVNNKQYETFSYLPPLTNQKIGRQVDYIINNGWTPCLEFADPSTSFVSNANAVRLQGVSAGYYDNRYWTMWKLPMFGCTDPSQVLREVSACQVAFPNVYIRLVAFDNVKQ 143          
BLAST of EY688442 vs. ExPASy Swiss-Prot
Match: RBS3_ACECL (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Acetabularia cliftonii GN=RBCS-3 PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.348e-27
Identity = 65/153 (42.48%), Postives = 89/153 (58.17%), Query Frame = 3
Query:  129 FPATKKTNNDITSIASNGGRVQC--MKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFEL-EKGWVYREHHKSPG-----YYDGRYWTMWKLPMYGCTDATQVLNEVGEVQKEYPHSFVRIIRFDNERQGNASISLLPSHQP 563
            FP   K N      ASN    +C  M VW P   K FET SYLPPL+DE + K+++Y++ + W PCLEF   ++ +   E+    G     Y D RYWTMWKLPM+GCTD +QVL+E+    K +P +++R++ FD  RQ    IS    H+P
Sbjct:   22 FPRATKNNK---GFASNAAVQKCRDMMVWQPFNNKMFETFSYLPPLTDEQISKQVDYILANSWTPCLEFAASDQAYAGNENCIRMGPVSSTYQDNRYWTMWKLPMFGCTDGSQVLSEIQACTKAFPDAYIRLVCFDANRQ--VQISGFLVHRP 169          
BLAST of EY688442 vs. ExPASy Swiss-Prot
Match: RBS4_ACECL (Ribulose bisphosphate carboxylase small chain 4, chloroplastic OS=Acetabularia cliftonii GN=RBCS-4 PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.141e-26
Identity = 64/158 (40.51%), Postives = 88/158 (55.70%), Query Frame = 3
Query:  108 GLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFEL-EKGWVYREHHKSPG-----YYDGRYWTMWKLPMYGCTDATQVLNEVGEVQKEYPHSFVRIIRFDNERQGNASISLLPSHQP 563
            G    SA P          + A N  R   M VW P   K FET SYLPPL+DE + K+++Y++ + W PCLEF   ++ +   E+    G     Y D RYWTMWKLPM+GCTD +QVL+E+    K +P +++R++ FD  RQ    IS    H+P
Sbjct:   15 GCTKPSAVPKVSINRKGFLNTAMNKKRE--MMVWQPFNNKMFETFSYLPPLTDEQISKQVDYILANSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLSEIQACTKAFPDAYIRLVCFDANRQ--VQISGFLVHRP 168          
BLAST of EY688442 vs. ExPASy Swiss-Prot
Match: RBS_BATOE (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Batophora oerstedii GN=RBCS PE=2 SV=2)

HSP 1 Score: 119.783 bits (299), Expect = 1.947e-26
Identity = 59/138 (42.75%), Postives = 85/138 (61.59%), Query Frame = 3
Query:  174 SNG--GRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFE-LEKGWVYREHHKSPG-----YYDGRYWTMWKLPMYGCTDATQVLNEVGEVQKEYPHSFVRIIRFDNERQGNASISLLPSHQP 563
            SNG   + + M VW P   K FET SYLPPL+D+ + K+++Y++R+ W PCLEF   ++ +V  ++    G     Y D RYWTMWKLPM+GC D +QVL E+    K +P +++R++ FD  RQ    IS    H+P
Sbjct:   26 SNGTISKSRAMMVWEPFNNKFFETFSYLPPLTDDQITKQVDYILRNNWTPCLEFAGSDQAYVTHDNTVRMGDCASTYQDNRYWTMWKLPMFGCIDGSQVLTEISACTKAFPDAYIRLVCFDANRQ--VQISGFLVHRP 161          
BLAST of EY688442 vs. ExPASy Swiss-Prot
Match: RBS6_ACECL (Ribulose bisphosphate carboxylase small chain 6, chloroplastic OS=Acetabularia cliftonii GN=RBCS-6 PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 4.338e-26
Identity = 57/128 (44.53%), Postives = 80/128 (62.50%), Query Frame = 3
Query:  198 MKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFEL-EKGWVYREHHKSPG-----YYDGRYWTMWKLPMYGCTDATQVLNEVGEVQKEYPHSFVRIIRFDNERQGNASISLLPSHQP 563
            M VW P   K FET SYLPPL+DE + K+++Y++ + W PCLEF   ++ +   E+  + G     Y D RYWTMWKLPM+GCTD +QVL E+    K +P +++R++ FD  RQ    IS    H+P
Sbjct:   43 MMVWQPFNNKMFETFSYLPPLTDEQISKQVDYILANAWTPCLEFAASDQAYAGNENCITMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLTEIQACTKAFPDAYIRLVCFDANRQ--VQISGFLVHRP 168          
BLAST of EY688442 vs. ExPASy Swiss-Prot
Match: RBS5_ACECL (Ribulose bisphosphate carboxylase small chain 5, chloroplastic OS=Acetabularia cliftonii GN=RBCS-5 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 5.665e-26
Identity = 57/128 (44.53%), Postives = 80/128 (62.50%), Query Frame = 3
Query:  198 MKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFEL-EKGWVYREHHKSPG-----YYDGRYWTMWKLPMYGCTDATQVLNEVGEVQKEYPHSFVRIIRFDNERQGNASISLLPSHQP 563
            M VW P   K FET SYLPPL+DE + K+++Y++ + W PCLEF   ++ +   E+    G     Y D RYWTMWKLPM+GCTD +QVL+E+    K +P +++R++ FD  RQ    IS    H+P
Sbjct:   45 MMVWQPFNNKMFETFSYLPPLTDEQISKQVDYILANSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLSEIQACTKAFPDAYIRLVCFDANRQ--VQISGFLVHRP 170          
BLAST of EY688442 vs. ExPASy Swiss-Prot
Match: RBS3_ACEAT (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Acetabularia acetabulum GN=RBCS-3 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 9.663e-26
Identity = 57/128 (44.53%), Postives = 81/128 (63.28%), Query Frame = 3
Query:  198 MKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFEL-EKGWVYREHHKSPG-----YYDGRYWTMWKLPMYGCTDATQVLNEVGEVQKEYPHSFVRIIRFDNERQGNASISLLPSHQP 563
            M VW P   K FET S+LPPL+DE + K+++Y++ + W PCLEF   ++ +   E+    G     Y D RYWTMWKLPM+GCTDA+QVL+E+    K +P +++R++ FD  RQ    IS    H+P
Sbjct:   43 MMVWQPFNNKMFETFSFLPPLTDEQISKQVDYILINSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGCTDASQVLSEIQACTKAFPDAYIRLVCFDANRQ--VQISGFLVHRP 168          
BLAST of EY688442 vs. ExPASy Swiss-Prot
Match: RBS4_ACEAT (Ribulose bisphosphate carboxylase small chain 4, chloroplastic OS=Acetabularia acetabulum GN=RBCS-4 PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.648e-25
Identity = 60/153 (39.22%), Postives = 87/153 (56.86%), Query Frame = 3
Query:  123 SAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFEL-EKGWVYREHHKSPG-----YYDGRYWTMWKLPMYGCTDATQVLNEVGEVQKEYPHSFVRIIRFDNERQGNASISLLPSHQP 563
            +A P    +     S  +N  R   M VW P   K FET S+LPPL+DE + K+++Y++ + W PCLEF   ++ +   E+    G     Y D RYWTMWKLPM+GCTD +QVL+E+      +P +++R++ FD  RQ    IS    H+P
Sbjct:   20 AATPKVVTSKRSFASTVANKNRE--MMVWQPFNNKMFETFSFLPPLTDEQISKQVDYILANSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLSEIQACTNAFPDAYIRLVCFDANRQ--VQISGFLVHRP 168          
The following BLAST results are available for this feature:
BLAST of EY688442 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 124
Match NameE-valueIdentityDescription
RBS1_CHLRE6.467e-3039.08Ribulose bisphosphate carboxylase small chain 1, c... [more]
RBS_EUGGR2.717e-2850.43Ribulose bisphosphate carboxylase small chains, ch... [more]
RBS_CHLMO4.634e-2847.37Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS3_ACECL1.348e-2742.48Ribulose bisphosphate carboxylase small chain 3, c... [more]
RBS4_ACECL1.141e-2640.51Ribulose bisphosphate carboxylase small chain 4, c... [more]
RBS_BATOE1.947e-2642.75Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS6_ACECL4.338e-2644.53Ribulose bisphosphate carboxylase small chain 6, c... [more]
RBS5_ACECL5.665e-2644.53Ribulose bisphosphate carboxylase small chain 5, c... [more]
RBS3_ACEAT9.663e-2644.53Ribulose bisphosphate carboxylase small chain 3, c... [more]
RBS4_ACEAT1.648e-2539.22Ribulose bisphosphate carboxylase small chain 4, c... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C2-003-070-G12-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY688442 ID=EY688442; Name=EY688442; organism=Citrus sinensis; type=EST; length=845bp
CCCGCGTCCGGCAAGTACCAATGGCTTCCTCCTTTATCTCATCGGCCACC
GTTGCCACCGCGAACCGCGCCACCCTTGCTCAGGCCCGCCCGGTCGCCCC
CTTCACCGGCCTCAAGTCTTCTTCTGCTTTCCCAGCAACCAAGAAGACCA
ACAATGACATTACTTCCATTGCAAGCAACGGCGGAAGAGTCCAATGCATG
AAGGTGTGGCCACCAACTGGCTTGAAGAAGTTCGAGACTCTCTCATACCT
CCCGCCACTGTCCGATGAAGCTTTGCTCAAGGAAATCAATTACCTTATCC
GCTCCGGCTGGATTCCCTGCTTGGAATTCGAGTTGGAGAAAGGATGGGTG
TACCGTGAGCACCACAAGTCACCAGGATACTACGATGGACGCTACTGGAC
AATGTGGAAGCTGCCCATGTATGGGTGCACAGATGCAACCCAGGTTTTGA
ACGAGGTTGGGGAGGTCCAAAAGGAATACCCACATTCATTCGTCCGAATT
ATCCGATTTGACAACGAGCGTCAAGGCAACGCATCAATTTCCTTGCTGCC
AAGCCACCAGCCCGTCTAGGCCCCCCAATTAAATTTGGGTAACCCACCCT
CGCATATTGGTGATAATCATAATGGCGAAACCCCCAAAAGAGAATCTCAA
TAGAGGGCCGGCGAGCGCGTGGAGACACCCCACCCCAGGCGACGCGCGCC
CCCGCCCCCACCGGCCGGGGCAACCAGGGACAACGCCCCGAGCACAACAC
GACAACACCGCGCCACAACACAGGAGGGGAGAGCGAGAAGACACGCCAAC
CGACGGAACAGGAGGACAAACCTAACTGGAACAGCCAAAGACCGA
back to top