EY688442
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of EY688442 vs. ExPASy Swiss-Prot
Match: RBS1_CHLRE (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Chlamydomonas reinhardtii GN=RBCS-1 PE=1 SV=1) HSP 1 Score: 131.339 bits (329), Expect = 6.467e-30 Identity = 68/174 (39.08%), Postives = 94/174 (54.02%), Query Frame = 3 Query: 21 MASSFISSATVATANRATLAQARPVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEF-ELEKGWVYREHHKSPG-----YYDGRYWTMWKLPMYGCTDATQVLNEVGEVQKEYPHSFVRIIRFDNERQ 524 MA+ S+ A R + RP+A ++ A + N M VW P K FET SYLPPL+DE + +++Y++ +GWIPCLEF E +K +V E G YYD RYWTMWKLPM+GC D QVL E+ K +P ++VR++ FDN++Q Sbjct: 1 MAAVIAKSSVSAAVARPARSSVRPMAALKPAVKAAPVAAPAQANQ--------------MMVWTPVNNKMFETFSYLPPLTDEQIAAQVDYIVANGWIPCLEFAEADKAYVSNESAIRFGSVSCLYYDNRYWTMWKLPMFGCRDPMQVLREIVACTKAFPDAYVRLVAFDNQKQ 160
BLAST of EY688442 vs. ExPASy Swiss-Prot
Match: RBS_EUGGR (Ribulose bisphosphate carboxylase small chains, chloroplastic OS=Euglena gracilis GN=RBCS1 PE=2 SV=1) HSP 1 Score: 125.946 bits (315), Expect = 2.717e-28 Identity = 58/115 (50.43%), Postives = 77/115 (66.96%), Query Frame = 3 Query: 198 MKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFEL-EKGWVYREHH-----KSPGYYDGRYWTMWKLPMYGCTDATQVLNEVGEVQKEYPHSFVRIIRFDNERQ 524 MKVW P KKFET SYLPPLSD + K+++ +I G PCLEF E ++ ++ + GYYD RYWTMWKLPM+GCTDA+QVL E+ E ++ YP +VR+ FD+ +Q Sbjct: 135 MKVWNPVNNKKFETFSYLPPLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRFSGTAAGYYDNRYWTMWKLPMFGCTDASQVLREISECRRAYPQCYVRLAAFDSVKQ 249 HSP 2 Score: 125.946 bits (315), Expect = 2.717e-28 Identity = 58/115 (50.43%), Postives = 77/115 (66.96%), Query Frame = 3 Query: 198 MKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFEL-EKGWVYREHH-----KSPGYYDGRYWTMWKLPMYGCTDATQVLNEVGEVQKEYPHSFVRIIRFDNERQ 524 MKVW P KKFET SYLPPLSD + K+++ +I G PCLEF E ++ ++ + GYYD RYWTMWKLPM+GCTDA+QVL E+ E ++ YP +VR+ FD+ +Q Sbjct: 279 MKVWNPVNNKKFETFSYLPPLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRFSGTAAGYYDNRYWTMWKLPMFGCTDASQVLREISECRRAYPQCYVRLAAFDSVKQ 393 HSP 3 Score: 125.946 bits (315), Expect = 2.717e-28 Identity = 58/115 (50.43%), Postives = 77/115 (66.96%), Query Frame = 3 Query: 198 MKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFEL-EKGWVYREHH-----KSPGYYDGRYWTMWKLPMYGCTDATQVLNEVGEVQKEYPHSFVRIIRFDNERQ 524 MKVW P KKFET SYLPPLSD + K+++ +I G PCLEF E ++ ++ + GYYD RYWTMWKLPM+GCTDA+QVL E+ E ++ YP +VR+ FD+ +Q Sbjct: 566 MKVWNPVNNKKFETFSYLPPLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRFSGTAAGYYDNRYWTMWKLPMFGCTDASQVLREISECRRAYPQCYVRLAAFDSVKQ 680 HSP 4 Score: 125.946 bits (315), Expect = 2.717e-28 Identity = 58/115 (50.43%), Postives = 77/115 (66.96%), Query Frame = 3 Query: 198 MKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFEL-EKGWVYREHH-----KSPGYYDGRYWTMWKLPMYGCTDATQVLNEVGEVQKEYPHSFVRIIRFDNERQ 524 MKVW P KKFET SYLPPLSD + K+++ +I G PCLEF E ++ ++ + GYYD RYWTMWKLPM+GCTDA+QVL E+ E ++ YP +VR+ FD+ +Q Sbjct: 709 MKVWNPVNNKKFETFSYLPPLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRFSGTAAGYYDNRYWTMWKLPMFGCTDASQVLREISECRRAYPQCYVRLAAFDSVKQ 823 HSP 5 Score: 125.946 bits (315), Expect = 2.717e-28 Identity = 58/115 (50.43%), Postives = 77/115 (66.96%), Query Frame = 3 Query: 198 MKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFEL-EKGWVYREHH-----KSPGYYDGRYWTMWKLPMYGCTDATQVLNEVGEVQKEYPHSFVRIIRFDNERQ 524 MKVW P KKFET SYLPPLSD + K+++ +I G PCLEF E ++ ++ + GYYD RYWTMWKLPM+GCTDA+QVL E+ E ++ YP +VR+ FD+ +Q Sbjct: 997 MKVWNPVNNKKFETFSYLPPLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRFSGTAAGYYDNRYWTMWKLPMFGCTDASQVLREISECRRAYPQCYVRLAAFDSVKQ 1111 HSP 6 Score: 125.946 bits (315), Expect = 2.717e-28 Identity = 58/115 (50.43%), Postives = 77/115 (66.96%), Query Frame = 3 Query: 198 MKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFEL-EKGWVYREHH-----KSPGYYDGRYWTMWKLPMYGCTDATQVLNEVGEVQKEYPHSFVRIIRFDNERQ 524 MKVW P KKFET SYLPPLSD + K+++ +I G PCLEF E ++ ++ + GYYD RYWTMWKLPM+GCTDA+QVL E+ E ++ YP +VR+ FD+ +Q Sbjct: 1141 MKVWNPVNNKKFETFSYLPPLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRFSGTAAGYYDNRYWTMWKLPMFGCTDASQVLREISECRRAYPQCYVRLAAFDSVKQ 1255 HSP 7 Score: 124.02 bits (310), Expect = 1.032e-27 Identity = 57/115 (49.57%), Postives = 76/115 (66.09%), Query Frame = 3 Query: 198 MKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFEL-EKGWVYREHH-----KSPGYYDGRYWTMWKLPMYGCTDATQVLNEVGEVQKEYPHSFVRIIRFDNERQ 524 MKVW P KKFET SYLPPLSD + K+++ +I G PCLEF E ++ ++ + GYYD YWTMWKLPM+GCTDA+QVL E+ E ++ YP +VR+ FD+ +Q Sbjct: 422 MKVWNPVNNKKFETFSYLPPLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRFSGTAAGYYDNHYWTMWKLPMFGCTDASQVLREISECRRAYPQCYVRLAAFDSVKQ 536 HSP 8 Score: 121.709 bits (304), Expect = 5.124e-27 Identity = 58/115 (50.43%), Postives = 77/115 (66.96%), Query Frame = 3 Query: 198 MKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFEL-EKGWVYREHH-----KSPGYYDGRYWTMWKLPMYGCTDATQVLNEVGEVQKEYPHSFVRIIRFDNERQ 524 MKVW P KKFET SYLPPLSD + K+++ +I G PCLEF E ++ ++ + GYYD RYWTMWKLPM+GCTDA+QVL E+ E ++ YP +VR + FD+ +Q Sbjct: 854 MKVWNPVNNKKFETFSYLPPLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRFSGTAAGYYDNRYWTMWKLPMFGCTDASQVLREISECRRAYPQCYVR-LAFDSVKQ 967
BLAST of EY688442 vs. ExPASy Swiss-Prot
Match: RBS_CHLMO (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Chlamydomonas moewusii GN=RBCS PE=2 SV=1) HSP 1 Score: 125.176 bits (313), Expect = 4.634e-28 Identity = 54/114 (47.37%), Postives = 76/114 (66.67%), Query Frame = 3 Query: 201 KVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFE------LEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLNEVGEVQKEYPHSFVRIIRFDNERQ 524 KVW P K++ET SYLPPL+++ + ++++Y+I +GW PCLEF + R S GYYD RYWTMWKLPM+GCTD +QVL EV Q +P+ ++R++ FDN +Q Sbjct: 30 KVWQPVNNKQYETFSYLPPLTNQKIGRQVDYIINNGWTPCLEFADPSTSFVSNANAVRLQGVSAGYYDNRYWTMWKLPMFGCTDPSQVLREVSACQVAFPNVYIRLVAFDNVKQ 143
BLAST of EY688442 vs. ExPASy Swiss-Prot
Match: RBS3_ACECL (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Acetabularia cliftonii GN=RBCS-3 PE=2 SV=1) HSP 1 Score: 123.635 bits (309), Expect = 1.348e-27 Identity = 65/153 (42.48%), Postives = 89/153 (58.17%), Query Frame = 3 Query: 129 FPATKKTNNDITSIASNGGRVQC--MKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFEL-EKGWVYREHHKSPG-----YYDGRYWTMWKLPMYGCTDATQVLNEVGEVQKEYPHSFVRIIRFDNERQGNASISLLPSHQP 563 FP K N ASN +C M VW P K FET SYLPPL+DE + K+++Y++ + W PCLEF ++ + E+ G Y D RYWTMWKLPM+GCTD +QVL+E+ K +P +++R++ FD RQ IS H+P Sbjct: 22 FPRATKNNK---GFASNAAVQKCRDMMVWQPFNNKMFETFSYLPPLTDEQISKQVDYILANSWTPCLEFAASDQAYAGNENCIRMGPVSSTYQDNRYWTMWKLPMFGCTDGSQVLSEIQACTKAFPDAYIRLVCFDANRQ--VQISGFLVHRP 169
BLAST of EY688442 vs. ExPASy Swiss-Prot
Match: RBS4_ACECL (Ribulose bisphosphate carboxylase small chain 4, chloroplastic OS=Acetabularia cliftonii GN=RBCS-4 PE=2 SV=1) HSP 1 Score: 120.553 bits (301), Expect = 1.141e-26 Identity = 64/158 (40.51%), Postives = 88/158 (55.70%), Query Frame = 3 Query: 108 GLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFEL-EKGWVYREHHKSPG-----YYDGRYWTMWKLPMYGCTDATQVLNEVGEVQKEYPHSFVRIIRFDNERQGNASISLLPSHQP 563 G SA P + A N R M VW P K FET SYLPPL+DE + K+++Y++ + W PCLEF ++ + E+ G Y D RYWTMWKLPM+GCTD +QVL+E+ K +P +++R++ FD RQ IS H+P Sbjct: 15 GCTKPSAVPKVSINRKGFLNTAMNKKRE--MMVWQPFNNKMFETFSYLPPLTDEQISKQVDYILANSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLSEIQACTKAFPDAYIRLVCFDANRQ--VQISGFLVHRP 168
BLAST of EY688442 vs. ExPASy Swiss-Prot
Match: RBS_BATOE (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Batophora oerstedii GN=RBCS PE=2 SV=2) HSP 1 Score: 119.783 bits (299), Expect = 1.947e-26 Identity = 59/138 (42.75%), Postives = 85/138 (61.59%), Query Frame = 3 Query: 174 SNG--GRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFE-LEKGWVYREHHKSPG-----YYDGRYWTMWKLPMYGCTDATQVLNEVGEVQKEYPHSFVRIIRFDNERQGNASISLLPSHQP 563 SNG + + M VW P K FET SYLPPL+D+ + K+++Y++R+ W PCLEF ++ +V ++ G Y D RYWTMWKLPM+GC D +QVL E+ K +P +++R++ FD RQ IS H+P Sbjct: 26 SNGTISKSRAMMVWEPFNNKFFETFSYLPPLTDDQITKQVDYILRNNWTPCLEFAGSDQAYVTHDNTVRMGDCASTYQDNRYWTMWKLPMFGCIDGSQVLTEISACTKAFPDAYIRLVCFDANRQ--VQISGFLVHRP 161
BLAST of EY688442 vs. ExPASy Swiss-Prot
Match: RBS6_ACECL (Ribulose bisphosphate carboxylase small chain 6, chloroplastic OS=Acetabularia cliftonii GN=RBCS-6 PE=3 SV=1) HSP 1 Score: 118.627 bits (296), Expect = 4.338e-26 Identity = 57/128 (44.53%), Postives = 80/128 (62.50%), Query Frame = 3 Query: 198 MKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFEL-EKGWVYREHHKSPG-----YYDGRYWTMWKLPMYGCTDATQVLNEVGEVQKEYPHSFVRIIRFDNERQGNASISLLPSHQP 563 M VW P K FET SYLPPL+DE + K+++Y++ + W PCLEF ++ + E+ + G Y D RYWTMWKLPM+GCTD +QVL E+ K +P +++R++ FD RQ IS H+P Sbjct: 43 MMVWQPFNNKMFETFSYLPPLTDEQISKQVDYILANAWTPCLEFAASDQAYAGNENCITMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLTEIQACTKAFPDAYIRLVCFDANRQ--VQISGFLVHRP 168
BLAST of EY688442 vs. ExPASy Swiss-Prot
Match: RBS5_ACECL (Ribulose bisphosphate carboxylase small chain 5, chloroplastic OS=Acetabularia cliftonii GN=RBCS-5 PE=2 SV=1) HSP 1 Score: 118.242 bits (295), Expect = 5.665e-26 Identity = 57/128 (44.53%), Postives = 80/128 (62.50%), Query Frame = 3 Query: 198 MKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFEL-EKGWVYREHHKSPG-----YYDGRYWTMWKLPMYGCTDATQVLNEVGEVQKEYPHSFVRIIRFDNERQGNASISLLPSHQP 563 M VW P K FET SYLPPL+DE + K+++Y++ + W PCLEF ++ + E+ G Y D RYWTMWKLPM+GCTD +QVL+E+ K +P +++R++ FD RQ IS H+P Sbjct: 45 MMVWQPFNNKMFETFSYLPPLTDEQISKQVDYILANSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLSEIQACTKAFPDAYIRLVCFDANRQ--VQISGFLVHRP 170
BLAST of EY688442 vs. ExPASy Swiss-Prot
Match: RBS3_ACEAT (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Acetabularia acetabulum GN=RBCS-3 PE=2 SV=1) HSP 1 Score: 117.472 bits (293), Expect = 9.663e-26 Identity = 57/128 (44.53%), Postives = 81/128 (63.28%), Query Frame = 3 Query: 198 MKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFEL-EKGWVYREHHKSPG-----YYDGRYWTMWKLPMYGCTDATQVLNEVGEVQKEYPHSFVRIIRFDNERQGNASISLLPSHQP 563 M VW P K FET S+LPPL+DE + K+++Y++ + W PCLEF ++ + E+ G Y D RYWTMWKLPM+GCTDA+QVL+E+ K +P +++R++ FD RQ IS H+P Sbjct: 43 MMVWQPFNNKMFETFSFLPPLTDEQISKQVDYILINSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGCTDASQVLSEIQACTKAFPDAYIRLVCFDANRQ--VQISGFLVHRP 168
BLAST of EY688442 vs. ExPASy Swiss-Prot
Match: RBS4_ACEAT (Ribulose bisphosphate carboxylase small chain 4, chloroplastic OS=Acetabularia acetabulum GN=RBCS-4 PE=2 SV=1) HSP 1 Score: 116.701 bits (291), Expect = 1.648e-25 Identity = 60/153 (39.22%), Postives = 87/153 (56.86%), Query Frame = 3 Query: 123 SAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFEL-EKGWVYREHHKSPG-----YYDGRYWTMWKLPMYGCTDATQVLNEVGEVQKEYPHSFVRIIRFDNERQGNASISLLPSHQP 563 +A P + S +N R M VW P K FET S+LPPL+DE + K+++Y++ + W PCLEF ++ + E+ G Y D RYWTMWKLPM+GCTD +QVL+E+ +P +++R++ FD RQ IS H+P Sbjct: 20 AATPKVVTSKRSFASTVANKNRE--MMVWQPFNNKMFETFSFLPPLTDEQISKQVDYILANSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLSEIQACTNAFPDAYIRLVCFDANRQ--VQISGFLVHRP 168 The following BLAST results are available for this feature:
BLAST of EY688442 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 124
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Sequences
The
following sequences are available for this feature:
EST sequence >EY688442 ID=EY688442; Name=EY688442; organism=Citrus sinensis; type=EST; length=845bpback to top |