EY688432

Overview
NameEY688432
Unique NameEY688432
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length860
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY688432 vs. ExPASy Swiss-Prot
Match: TBA_ONCKE (Tubulin alpha chain OS=Oncorhynchus keta PE=2 SV=1)

HSP 1 Score: 300.827 bits (769), Expect = 6.349e-81
Identity = 145/218 (66.51%), Postives = 164/218 (75.23%), Query Frame = 2
Query:  110 IHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPISSGLHICC*PLNRVLSTHSLVEAYGCGLFFSQMRPFYDTCRPSLDIGSPN 763
            +H+GQAG+Q+GNACWELYCLEHGIQPDGQMPSDKT GGGDD+FNTFFSETGAGKHVPRA+FVDLEPTVIDEVRTG YRQLFHPEQLI+GKEDAANN+ARGHYTIGKEI+D+ LDR RKLAD CTGLQGFL+F++                  VDYGKKSKL F VYP          P N +L+TH+ +E   C  F       YD CR +LDI  P+
Sbjct:    1 MHVGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTCGGGDDSFNTFFSETGAGKHVPRAIFVDLEPTVIDEVRTGIYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDIVLDRTRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAVYPAPQVSTAVVEPYNSILTTHTTLEHSDCA-FMVDNEAIYDICRRNLDIERPS 217          
BLAST of EY688432 vs. ExPASy Swiss-Prot
Match: TBA2_HOMAM (Tubulin alpha-2 chain OS=Homarus americanus PE=2 SV=1)

HSP 1 Score: 295.819 bits (756), Expect = 2.043e-79
Identity = 142/223 (63.68%), Postives = 166/223 (74.44%), Query Frame = 2
Query:   92 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPISSGLHICC*PLNRVLSTHSLVEAYGCGLFFSQMRPFYDTCRPSLDIGSP 760
            MRECISIH+GQAG+Q+GN+CWELYCLEHGIQPDGQMPSDKTVG  +D+FNTFF+ETG+GKHVPRAVFVDLEP+VIDEVR+G YRQLFHPEQLISGKEDAANN+ARGHYTIGKE VD+ LDRIRKLAD CTGLQGFL+F +                  V+YGKKSKL   +YP          P N +L+TH+ +E   C  F       +D C+ +LD+  P
Sbjct:    1 MRECISIHVGQAGVQMGNSCWELYCLEHGIQPDGQMPSDKTVGVCNDSFNTFFTETGSGKHVPRAVFVDLEPSVIDEVRSGIYRQLFHPEQLISGKEDAANNYARGHYTIGKEYVDIVLDRIRKLADQCTGLQGFLIFRSFGGGTGSGFASLLMERLSVEYGKKSKLEIAIYPAPQSATSVVEPYNSILTTHTTLEHSDC-CFMVDNEAIFDICQRNLDVSRP 222          
BLAST of EY688432 vs. ExPASy Swiss-Prot
Match: TBA1_PNECA (Tubulin alpha chain OS=Pneumocystis carinii GN=TUB1 PE=3 SV=1)

HSP 1 Score: 277.715 bits (709), Expect = 5.756e-74
Identity = 134/223 (60.09%), Postives = 162/223 (72.65%), Query Frame = 2
Query:   92 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPISSGLHICC*PLNRVLSTHSLVEAYGCGLFFSQMRPFYDTCRPSLDIGSP 760
            MRE ISIH+GQAG Q+GNACWELYCLEHGI+PDG++  +KT    DD F+TFFSETG+GK+VPR+++VDLEP VID+VRTGTYR LFHPEQLI+GKEDAANN+ARGHYT+GKE++D  LDRIR++ADNCTGLQGFLVF++                  VDYGKKSKL F+VYP          P N +L+TH+ +E   C  F       YD CR +LDI  P
Sbjct:    1 MREVISIHVGQAGTQIGNACWELYCLEHGIEPDGRLSPEKTTKPLDDGFSTFFSETGSGKYVPRSIYVDLEPNVIDQVRTGTYRHLFHPEQLITGKEDAANNYARGHYTVGKELIDHVLDRIRRVADNCTGLQGFLVFHSFGGGTGSGFGALLLERLSVDYGKKSKLEFSVYPAPQVSTSVVEPYNSILTTHTTLEHSDCS-FMVDNEAIYDICRRNLDIERP 222          
BLAST of EY688432 vs. ExPASy Swiss-Prot
Match: TBA2_CAEEL (Tubulin alpha-2 chain OS=Caenorhabditis elegans GN=tba-2 PE=2 SV=1)

HSP 1 Score: 275.018 bits (702), Expect = 3.731e-73
Identity = 129/224 (57.59%), Postives = 164/224 (73.21%), Query Frame = 2
Query:   92 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPISSGLHICC*PLNRVLSTHSLVEAYGCGLFFSQMRPFYDTCRPSLDIGSPN 763
            MRE ISIH+GQAG+Q+GNACWELYCLEHGIQPDG MP+  T  G  ++F TFFS+TG+G++VPR++FVDLEPTV+DE+RTGTY++LFHPEQ+I+GKEDAANN+ARGHYT+GKE++D  LDRIR+LADNC+GLQGF VF++                  VDYGKKSKL F++YP          P N +L+TH+ +E   C  F       YD CR +LD+  P+
Sbjct:    1 MREVISIHVGQAGVQIGNACWELYCLEHGIQPDGTMPTQSTNEG--ESFTTFFSDTGSGRYVPRSIFVDLEPTVVDEIRTGTYKKLFHPEQMITGKEDAANNYARGHYTVGKELIDTVLDRIRRLADNCSGLQGFFVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCA-FMVDNEAIYDICRRNLDVERPS 221          
BLAST of EY688432 vs. ExPASy Swiss-Prot
Match: TBA8_RAT (Tubulin alpha-8 chain OS=Rattus norvegicus GN=Tuba8 PE=2 SV=1)

HSP 1 Score: 273.478 bits (698), Expect = 1.086e-72
Identity = 132/223 (59.19%), Postives = 156/223 (69.96%), Query Frame = 2
Query:   92 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPISSGLHICC*PLNRVLSTHSLVEAYGCGLFFSQMRPFYDTCRPSLDIGSP 760
            MRECIS+H+GQAG+Q+GNACWEL+CLEHGIQ DG   +  +    DD+F TFFSETG GKHVPRAV VDLEPTV+DEVR GTYRQLFHPEQLI+GKEDAANN+ARGHYT+GKE +DL LDRIRKL D C+GLQGFL+F++                  +DYGKKSKL F +YP          P N +L+TH+ +E   C  F       YD CR +LDI  P
Sbjct:    1 MRECISVHVGQAGVQIGNACWELFCLEHGIQADGTFGTQASKINDDDSFTTFFSETGNGKHVPRAVMVDLEPTVVDEVRAGTYRQLFHPEQLITGKEDAANNYARGHYTVGKESIDLVLDRIRKLTDACSGLQGFLIFHSFGGGTGSGFTSLLMERLSLDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCA-FMVDNEAIYDICRRNLDIERP 222          
BLAST of EY688432 vs. ExPASy Swiss-Prot
Match: TBA8_MOUSE (Tubulin alpha-8 chain OS=Mus musculus GN=Tuba8 PE=1 SV=1)

HSP 1 Score: 273.478 bits (698), Expect = 1.086e-72
Identity = 132/223 (59.19%), Postives = 156/223 (69.96%), Query Frame = 2
Query:   92 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPISSGLHICC*PLNRVLSTHSLVEAYGCGLFFSQMRPFYDTCRPSLDIGSP 760
            MRECIS+H+GQAG+Q+GNACWEL+CLEHGIQ DG   +  +    DD+F TFFSETG GKHVPRAV VDLEPTV+DEVR GTYRQLFHPEQLI+GKEDAANN+ARGHYT+GKE +DL LDRIRKL D C+GLQGFL+F++                  +DYGKKSKL F +YP          P N +L+TH+ +E   C  F       YD CR +LDI  P
Sbjct:    1 MRECISVHVGQAGVQIGNACWELFCLEHGIQADGTFGTQASKINDDDSFTTFFSETGNGKHVPRAVMVDLEPTVVDEVRAGTYRQLFHPEQLITGKEDAANNYARGHYTVGKESIDLVLDRIRKLTDACSGLQGFLIFHSFGGGTGSGFTSLLMERLSLDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCA-FMVDNEAIYDICRRNLDIERP 222          
BLAST of EY688432 vs. ExPASy Swiss-Prot
Match: TBA8_HUMAN (Tubulin alpha-8 chain OS=Homo sapiens GN=TUBA8 PE=1 SV=1)

HSP 1 Score: 273.478 bits (698), Expect = 1.086e-72
Identity = 131/223 (58.74%), Postives = 156/223 (69.96%), Query Frame = 2
Query:   92 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPISSGLHICC*PLNRVLSTHSLVEAYGCGLFFSQMRPFYDTCRPSLDIGSP 760
            MRECIS+H+GQAG+Q+GNACWEL+CLEHGIQ DG   +  +    DD+F TFFSETG GKHVPRAV +DLEPTV+DEVR GTYRQLFHPEQLI+GKEDAANN+ARGHYT+GKE +DL LDRIRKL D C+GLQGFL+F++                  +DYGKKSKL F +YP          P N +L+TH+ +E   C  F       YD CR +LDI  P
Sbjct:    1 MRECISVHVGQAGVQIGNACWELFCLEHGIQADGTFDAQASKINDDDSFTTFFSETGNGKHVPRAVMIDLEPTVVDEVRAGTYRQLFHPEQLITGKEDAANNYARGHYTVGKESIDLVLDRIRKLTDACSGLQGFLIFHSFGGGTGSGFTSLLMERLSLDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCA-FMVDNEAIYDICRRNLDIERP 222          
BLAST of EY688432 vs. ExPASy Swiss-Prot
Match: TBA8_BOVIN (Tubulin alpha-8 chain OS=Bos taurus GN=TUBA8 PE=2 SV=1)

HSP 1 Score: 270.781 bits (691), Expect = 7.036e-72
Identity = 131/223 (58.74%), Postives = 155/223 (69.51%), Query Frame = 2
Query:   92 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPISSGLHICC*PLNRVLSTHSLVEAYGCGLFFSQMRPFYDTCRPSLDIGSP 760
            MRECIS+H+GQAG+Q+GNACWEL+CLEHGIQ DG   +  +    DD+F TFFSETG GKHVPRAV VDLEPTV+DEVR GTYR LFHPEQLI+GKEDAANN+ARGHYT+GKE +DL LDRIRKL D C+GLQGFL+F++                  +DYGKKSKL F +YP          P N +L+TH+ +E   C  F       YD CR +LDI  P
Sbjct:    1 MRECISVHVGQAGVQIGNACWELFCLEHGIQADGTFGAQASKIHDDDSFTTFFSETGNGKHVPRAVMVDLEPTVVDEVRAGTYRHLFHPEQLITGKEDAANNYARGHYTVGKESIDLVLDRIRKLTDACSGLQGFLIFHSFGGGTGSGFTSLLMERLSLDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCA-FMVDNEAIYDICRRNLDIERP 222          
BLAST of EY688432 vs. ExPASy Swiss-Prot
Match: TBAN_GUITH (Tubulin alpha chain, nucleomorph OS=Guillardia theta GN=tubA PE=3 SV=1)

HSP 1 Score: 261.536 bits (667), Expect = 4.269e-69
Identity = 131/223 (58.74%), Postives = 153/223 (68.61%), Query Frame = 2
Query:   92 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPISSGLHICC*PLNRVLSTHSLVEAYGCGLFFSQMRPFYDTCRPSLDIGSP 760
            MRE +SIHIGQAGIQVGNACWELYCLEHGI PDG +  D      DDAF+TFFSET  GK VPR VF+DLE  VIDEV+ G Y+ L+HPEQLI G EDAANN+ARGHYTIGKEI+++ LDRIRKL +NC+GLQGFL+FN+V                 +DYGKKSKLGFTVYP          P N VL+THSL+E     +        Y+ C+ SL+I  P
Sbjct:    1 MREVLSIHIGQAGIQVGNACWELYCLEHGINPDGSIIQDFNKKKNDDAFSTFFSETSTGKRVPRCVFLDLESGVIDEVKNGRYKNLYHPEQLICGNEDAANNYARGHYTIGKEIIEIALDRIRKLVENCSGLQGFLIFNSVGGGTGSGLGSLLLERLSLDYGKKSKLGFTVYPSPQVSTAVVEPYNSVLATHSLLEHTDVAVVLDN-EAIYEICQRSLNIERP 222          
BLAST of EY688432 vs. ExPASy Swiss-Prot
Match: TBA2_CHICK (Tubulin alpha-2 chain OS=Gallus gallus PE=2 SV=1)

HSP 1 Score: 260.381 bits (664), Expect = 9.510e-69
Identity = 127/223 (56.95%), Postives = 153/223 (68.61%), Query Frame = 2
Query:   92 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPISSGLHICC*PLNRVLSTHSLVEAYGCGLFFSQMRPFYDTCRPSLDIGSP 760
            MRECIS+HIGQAG+Q+GNACWEL+CLEH IQPDG      +    DD+F TFF ET   K+VPRA+ VDLEPTV+DEVRTGTYR LFHPEQLI+GKEDAANN+ARGHYT+GK+ VD+  DRIRKLAD+C+GLQGFL+F++                  V+YGKKSKL F +YP          P N VL+TH+ +E   C +F       YD C  +LDI  P
Sbjct:    1 MRECISVHIGQAGVQIGNACWELFCLEHSIQPDGTFSDPPS---SDDSFATFFRETSMSKYVPRAIMVDLEPTVVDEVRTGTYRHLFHPEQLITGKEDAANNYARGHYTVGKDKVDMVSDRIRKLADSCSGLQGFLIFHSFGGGTGSGFTSLLMERLSVEYGKKSKLEFAIYPAPQASSAVVEPYNSVLTTHTTLEHSDC-VFMVDNEAIYDICHRNLDIERP 219          
The following BLAST results are available for this feature:
BLAST of EY688432 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 410
Match NameE-valueIdentityDescription
TBA_ONCKE6.349e-8166.51Tubulin alpha chain OS=Oncorhynchus keta PE=2 SV=1[more]
TBA2_HOMAM2.043e-7963.68Tubulin alpha-2 chain OS=Homarus americanus PE=2 S... [more]
TBA1_PNECA5.756e-7460.09Tubulin alpha chain OS=Pneumocystis carinii GN=TUB... [more]
TBA2_CAEEL3.731e-7357.59Tubulin alpha-2 chain OS=Caenorhabditis elegans GN... [more]
TBA8_RAT1.086e-7259.19Tubulin alpha-8 chain OS=Rattus norvegicus GN=Tuba... [more]
TBA8_MOUSE1.086e-7259.19Tubulin alpha-8 chain OS=Mus musculus GN=Tuba8 PE=... [more]
TBA8_HUMAN1.086e-7258.74Tubulin alpha-8 chain OS=Homo sapiens GN=TUBA8 PE=... [more]
TBA8_BOVIN7.036e-7258.74Tubulin alpha-8 chain OS=Bos taurus GN=TUBA8 PE=2 ... [more]
TBAN_GUITH4.269e-6958.74Tubulin alpha chain, nucleomorph OS=Guillardia the... [more]
TBA2_CHICK9.510e-6956.95Tubulin alpha-2 chain OS=Gallus gallus PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-070-F10-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY688432 ID=EY688432; Name=EY688432; organism=Citrus sinensis; type=EST; length=860bp
AAGAGGCGTCTTATAAACCCCTTCGTTTAGATTCAATTACTTCTTCTTTT
GGCTGTGTACCTCGTCGTTTTTCTTCTCTTAATCTGCGAAAATGAGAGAG
TGCATTTCAATCCATATCGGTCAGGCCGGTATCCAGGTCGGAAATGCCTG
CTGGGAACTCTACTGCCTCGAGCACGGCATTCAGCCTGATGGCCAAATGC
CAAGTGATAAGACAGTCGGAGGTGGCGACGATGCTTTCAACACCTTTTTC
AGTGAAACAGGTGCAGGGAAGCACGTGCCTCGTGCTGTCTTTGTTGATCT
TGAGCCCACTGTCATTGATGAAGTGAGGACCGGAACTTACCGCCAGCTCT
TCCACCCTGAGCAGCTCATCAGTGGCAAGGAAGACGCTGCCAACAACTTC
GCCCGTGGCCACTATACCATTGGTAAGGAGATTGTTGATCTCTGCCTTGA
CCGCATCAGGAAGCTGGCTGATAACTGCACTGGTCTCCAGGGATTCCTTG
TTTTCAATGCTGTTGGTGGAGGAACTGGCTCTGGTCTTGGGTCTCTTCTT
CTGGAGAGGTTGTCTGTTGACTATGGAAAGAAGTCAAAGTTGGGCTTCAC
TGTCTACCCCATCTCCTCAGGTCTCCACATCTGTTGTTGACCCTTAAACA
GGGTCCTCTCAACCCACTCCCTGGTGGAAGCATACGGATGTGGGCTGTTC
TTCTCCCAAATGAGGCCATTTTATGACACCTGCCGGCCCTCCCTTGACAT
TGGAAGCCCCAACCAAAACTACCCTCACTAAACTTGGTCCTCAGGTAACT
TCTTCCCAGCACGCCCGCACGCAGAGCTGGGAAGGGGATCTCAATGGAGA
GGGGCACATA
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